https://github.com/a-slide/BASH_NGS_Tools
History
Tip revision: ae30fe71431cf35a8dc6948d3333ed06f0eb64a3 authored by a-slide on 19 September 2016, 15:44:42 UTC
Add a pipeline for STAR
Tip revision: ae30fe7
File Mode Size
AA_SS_prediction.sh -rwxr-xr-x 2.4 KB
LICENSE -rwxr-xr-x 17.6 KB
MAW2.sh -rwxr-xr-x 7.9 KB
MAW3.sh -rwxr-xr-x 8.4 KB
RNAseq_STAR_pipeline.sh -rwxr-xr-x 1.7 KB
RNAseq_U7_pipeline.sh -rwxr-xr-x 1.7 KB
RNAseq_bac_pipeline.sh -rwxr-xr-x 1.3 KB
bam_to_vcf_consensus.sh -rwxr-xr-x 1.4 KB
bwa_pipeline_pair.sh -rwxr-xr-x 1.3 KB
bwa_pipeline_single.sh -rwxr-xr-x 478 bytes
fastq-deinterlacer.sh -rwxr-xr-x 309 bytes
findflagstat.sh -rwxr-xr-x 129 bytes
findmv.sh -rwxr-xr-x 77 bytes
for-file-list.sh -rwxr-xr-x 78 bytes
gitall.sh -rwxr-xr-x 183 bytes
hitsum.sh -rwxr-xr-x 266 bytes
hts-count_pipeline_single.sh -rwxr-xr-x 423 bytes
integral-pair.sh -rwxr-xr-x 4.7 KB
integral-single.sh -rwxr-xr-x 5.2 KB
mapping.sh -rwxr-xr-x 1.6 KB
mapping2.sh -rwxr-xr-x 1.5 KB
multi_fasta_sequence_list.sh -rwxr-xr-x 241 bytes
mv.sh -rwxr-xr-x 32 bytes
replace-header-fasta.sh -rwxr-xr-x 89 bytes
star_pipeline_single.sh -rwxr-xr-x 571 bytes

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