https://github.com/a-slide/BASH_NGS_Tools
Tip revision: ae30fe71431cf35a8dc6948d3333ed06f0eb64a3 authored by a-slide on 19 September 2016, 15:44:42 UTC
Add a pipeline for STAR
Add a pipeline for STAR
Tip revision: ae30fe7
| File | Mode | Size |
|---|---|---|
| AA_SS_prediction.sh | -rwxr-xr-x | 2.4 KB |
| LICENSE | -rwxr-xr-x | 17.6 KB |
| MAW2.sh | -rwxr-xr-x | 7.9 KB |
| MAW3.sh | -rwxr-xr-x | 8.4 KB |
| RNAseq_STAR_pipeline.sh | -rwxr-xr-x | 1.7 KB |
| RNAseq_U7_pipeline.sh | -rwxr-xr-x | 1.7 KB |
| RNAseq_bac_pipeline.sh | -rwxr-xr-x | 1.3 KB |
| bam_to_vcf_consensus.sh | -rwxr-xr-x | 1.4 KB |
| bwa_pipeline_pair.sh | -rwxr-xr-x | 1.3 KB |
| bwa_pipeline_single.sh | -rwxr-xr-x | 478 bytes |
| fastq-deinterlacer.sh | -rwxr-xr-x | 309 bytes |
| findflagstat.sh | -rwxr-xr-x | 129 bytes |
| findmv.sh | -rwxr-xr-x | 77 bytes |
| for-file-list.sh | -rwxr-xr-x | 78 bytes |
| gitall.sh | -rwxr-xr-x | 183 bytes |
| hitsum.sh | -rwxr-xr-x | 266 bytes |
| hts-count_pipeline_single.sh | -rwxr-xr-x | 423 bytes |
| integral-pair.sh | -rwxr-xr-x | 4.7 KB |
| integral-single.sh | -rwxr-xr-x | 5.2 KB |
| mapping.sh | -rwxr-xr-x | 1.6 KB |
| mapping2.sh | -rwxr-xr-x | 1.5 KB |
| multi_fasta_sequence_list.sh | -rwxr-xr-x | 241 bytes |
| mv.sh | -rwxr-xr-x | 32 bytes |
| replace-header-fasta.sh | -rwxr-xr-x | 89 bytes |
| star_pipeline_single.sh | -rwxr-xr-x | 571 bytes |
