https://github.com/claudiuskerth/scripts_for_RAD
Tip revision: 9a9e2135211bdd377a8201b59888619e508327ed authored by Claudius Kerth on 12 October 2017, 13:17:00 UTC
Merge branch 'master' of github.com:claudiuskerth/scripts_for_RAD
Merge branch 'master' of github.com:claudiuskerth/scripts_for_RAD
Tip revision: 9a9e213
| File | Mode | Size |
|---|---|---|
| .gitignore | -rw-r--r-- | 160 bytes |
| Isize.pl | -rwxr-xr-x | 859 bytes |
| Ludovics_correction_1D.py | -rwxr-xr-x | 3.2 KB |
| README | -rw-r--r-- | 804 bytes |
| SAM_flag_dist.pl | -rwxr-xr-x | 1.1 KB |
| check_read_quality.pl | -rwxr-xr-x | 2.1 KB |
| cluster.pl | -rwxr-xr-x | 4.1 KB |
| count_reads_barcode.pl | -rwxr-xr-x | 2.7 KB |
| coverage.pl | -rwxr-xr-x | 4.3 KB |
| coverage_filter.py | -rwxr-xr-x | 4.5 KB |
| decode_SAMflag.pl | -rwxr-xr-x | 1.8 KB |
| display2fastq.pl | -rwxr-xr-x | 2.0 KB |
| excess_coverage_filter.py | -rwxr-xr-x | 3.9 KB |
| extract_tags_from_export.pl | -rwxr-xr-x | 2.9 KB |
| filter_credible_tags.pl | -rwxr-xr-x | 19.8 KB |
| filter_suitable_6bp_cutter.pl | -rwxr-xr-x | 5.0 KB |
| find_div_SNPs.pl | -rwxr-xr-x | 15.9 KB |
| find_linked_RADtags.pl | -rwxr-xr-x | 5.5 KB |
| fold_1D_spectrum.py | -rwxr-xr-x | 778 bytes |
| grep_fq_read_pairs.pl | -rwxr-xr-x | 1.7 KB |
| grep_true_RADtag.pl | -rwxr-xr-x | 20.6 KB |
| insert_name_in_fastq_header.pl | -rwxr-xr-x | 1.4 KB |
| mean_sd.pl | -rwxr-xr-x | 778 bytes |
| merge_paired_seqs.pl | -rwxr-xr-x | 7.1 KB |
| minimum_coverage_filter.py | -rwxr-xr-x | 1.2 KB |
| position.pl | -rwxr-xr-x | 1.9 KB |
| purge_PCR_duplicates.pl | -rwxr-xr-x | 25.2 KB |
| reformat_qual_scores.pl | -rwxr-xr-x | 2.0 KB |
| remove_adapter_reads.pl | -rwxr-xr-x | 3.7 KB |
| remove_dodgy_positions.pl | -rwxr-xr-x | 2.1 KB |
| remove_uncalled_bases.pl | -rwxr-xr-x | 6.9 KB |
| rename_sample_files.pl | -rwxr-xr-x | 3.0 KB |
| screen.pl | -rwxr-xr-x | 3.4 KB |
| sites2bed.pl | -rwxr-xr-x | 1.6 KB |
| sort_by_column.pl | -rwxr-xr-x | 1.0 KB |
| split_by_barcode.pl | -rwxr-xr-x | 4.4 KB |
| translation.pl | -rwxr-xr-x | 4.4 KB |
| trim.pl | -rwxr-xr-x | 4.1 KB |
