https://github.com/gfrd/egfrd
Tip revision: aba7b0bb69be7a4de0da9927db78387a009c445f authored by YetAnotherTomek on 04 December 2017, 16:57:54 UTC
Merge pull request #115 from YetAnotherTomek/develop
Merge pull request #115 from YetAnotherTomek/develop
Tip revision: aba7b0b
| File | Mode | Size |
|---|---|---|
| binding | ||
| doc | ||
| gui | ||
| m4 | ||
| misc | ||
| peer | ||
| samples | ||
| test | ||
| unittests | ||
| utils | ||
| visualization | ||
| .gitignore | -rw-r--r-- | 1.8 KB |
| .hgignore | -rw-r--r-- | 854 bytes |
| AUTHORS | -rw-r--r-- | 66 bytes |
| AnalyticalPair.hpp | -rw-r--r-- | 6.1 KB |
| AnalyticalSingle.hpp | -rw-r--r-- | 3.1 KB |
| BDPropagator.hpp | -rw-r--r-- | 17.1 KB |
| BDSimulator.hpp | -rw-r--r-- | 9.0 KB |
| BasicNetworkRulesImpl.cpp | -rw-r--r-- | 1.6 KB |
| BasicNetworkRulesImpl.hpp | -rw-r--r-- | 952 bytes |
| BasicReactionRecorderImpl.hpp | -rw-r--r-- | 496 bytes |
| Box.hpp | -rw-r--r-- | 11.4 KB |
| COPYING | -rw-r--r-- | 17.6 KB |
| ChangeLog | -rw-r--r-- | 0 bytes |
| ConnectivityContainer.hpp | -rw-r--r-- | 3.5 KB |
| ConsoleAppender.cpp | -rw-r--r-- | 559 bytes |
| ConsoleAppender.hpp | -rw-r--r-- | 380 bytes |
| CuboidalRegion.hpp | -rw-r--r-- | 21.8 KB |
| Cylinder.hpp | -rw-r--r-- | 9.6 KB |
| CylindricalBesselGenerator.cpp | -rw-r--r-- | 3.2 KB |
| CylindricalBesselGenerator.hpp | -rw-r--r-- | 726 bytes |
| CylindricalSurface.hpp | -rw-r--r-- | 27.0 KB |
| Defs.hpp | -rw-r--r-- | 451 bytes |
| Disk.hpp | -rw-r--r-- | 8.6 KB |
| DiskSurface.hpp | -rw-r--r-- | 31.1 KB |
| Domain.hpp | -rw-r--r-- | 2.6 KB |
| DomainFactory.hpp | -rw-r--r-- | 1.4 KB |
| DomainID.hpp | -rw-r--r-- | 1.3 KB |
| DomainUtils.hpp | -rw-r--r-- | 3.4 KB |
| DynamicPriorityQueue.hpp | -rw-r--r-- | 14.5 KB |
| EGFRDSimulator.hpp | -rw-r--r-- | 141.9 KB |
| EGFRDSimulatorFactory.hpp | -rw-r--r-- | 3.4 KB |
| EventScheduler.hpp | -rw-r--r-- | 2.9 KB |
| GSLRandomNumberGenerator.hpp | -rw-r--r-- | 1.3 KB |
| GreensFunction.hpp | -rw-r--r-- | 406 bytes |
| GreensFunction1DAbsAbs.cpp | -rw-r--r-- | 21.3 KB |
| GreensFunction1DAbsAbs.hpp | -rw-r--r-- | 6.1 KB |
| GreensFunction1DAbsSinkAbs.cpp | -rw-r--r-- | 31.2 KB |
| GreensFunction1DAbsSinkAbs.hpp | -rw-r--r-- | 9.8 KB |
| GreensFunction1DRadAbs.cpp | -rw-r--r-- | 24.9 KB |
| GreensFunction1DRadAbs.hpp | -rw-r--r-- | 8.3 KB |
| GreensFunction2DAbsSym.cpp | -rw-r--r-- | 8.2 KB |
| GreensFunction2DAbsSym.hpp | -rw-r--r-- | 1.7 KB |
| GreensFunction2DRadAbs.cpp | -rw-r--r-- | 61.0 KB |
| GreensFunction2DRadAbs.hpp | -rw-r--r-- | 10.4 KB |
| GreensFunction3D.cpp | -rw-r--r-- | 6.7 KB |
| GreensFunction3D.hpp | -rw-r--r-- | 1.2 KB |
| GreensFunction3DAbs.cpp | -rw-r--r-- | 20.2 KB |
| GreensFunction3DAbs.hpp | -rw-r--r-- | 2.6 KB |
| GreensFunction3DAbsSym.cpp | -rw-r--r-- | 9.4 KB |
| GreensFunction3DAbsSym.hpp | -rw-r--r-- | 1.4 KB |
| GreensFunction3DRadAbs.cpp | -rw-r--r-- | 62.9 KB |
| GreensFunction3DRadAbs.hpp | -rw-r--r-- | 7.4 KB |
| GreensFunction3DRadAbsBase.cpp | -rw-r--r-- | 154 bytes |
| GreensFunction3DRadAbsBase.hpp | -rw-r--r-- | 675 bytes |
| GreensFunction3DRadInf.cpp | -rw-r--r-- | 19.4 KB |
| GreensFunction3DRadInf.hpp | -rw-r--r-- | 2.9 KB |
| GreensFunction3DSym.cpp | -rw-r--r-- | 3.4 KB |
| GreensFunction3DSym.hpp | -rw-r--r-- | 1019 bytes |
| HalfOrderBesselGenerator.hpp | -rw-r--r-- | 2.8 KB |
| INSTALL | -rw-r--r-- | 1.6 KB |
| Identifier.hpp | -rw-r--r-- | 4.3 KB |
| Logger.cpp | -rw-r--r-- | 6.4 KB |
| Logger.hpp | -rw-r--r-- | 3.6 KB |
| Makefile.am | -rwxr-xr-x | 6.0 KB |
| MatrixSpace.hpp | -rw-r--r-- | 17.9 KB |
| Model.cpp | -rw-r--r-- | 2.0 KB |
| Model.hpp | -rw-r--r-- | 2.9 KB |
| Multi.hpp | -rw-r--r-- | 36.2 KB |
| NEWS | -rw-r--r-- | 0 bytes |
| NetworkRules.cpp | -rw-r--r-- | 132 bytes |
| NetworkRules.hpp | -rw-r--r-- | 821 bytes |
| NetworkRulesWrapper.hpp | -rw-r--r-- | 5.0 KB |
| Pair.hpp | -rw-r--r-- | 1.4 KB |
| PairGreensFunction.hpp | -rw-r--r-- | 995 bytes |
| Particle.hpp | -rw-r--r-- | 5.4 KB |
| ParticleContainer.hpp | -rw-r--r-- | 9.4 KB |
| ParticleContainerBase.hpp | -rw-r--r-- | 21.9 KB |
| ParticleID.hpp | -rw-r--r-- | 1.6 KB |
| ParticleModel.cpp | -rw-r--r-- | 2.4 KB |
| ParticleModel.hpp | -rw-r--r-- | 1.9 KB |
| ParticleSimulationStructure.hpp | -rw-r--r-- | 1.1 KB |
| ParticleSimulator.hpp | -rw-r--r-- | 6.9 KB |
| ParticleSimulatorFactory.hpp | -rw-r--r-- | 501 bytes |
| PlanarSurface.hpp | -rw-r--r-- | 25.9 KB |
| Plane.hpp | -rw-r--r-- | 17.0 KB |
| Point.hpp | -rw-r--r-- | 389 bytes |
| PyEventScheduler.hpp | -rw-r--r-- | 128 bytes |
| README | -rw-r--r-- | 5.4 KB |
| ReactionRecord.hpp | -rw-r--r-- | 3.5 KB |
| ReactionRecorder.hpp | -rw-r--r-- | 307 bytes |
| ReactionRule.hpp | -rw-r--r-- | 5.5 KB |
| ReactionRuleInfo.hpp | -rw-r--r-- | 1.8 KB |
| Region.hpp | -rw-r--r-- | 4.3 KB |
| SerialIDGenerator.hpp | -rw-r--r-- | 7.2 KB |
| Shape.hpp | -rw-r--r-- | 1.9 KB |
| ShapedDomain.hpp | -rw-r--r-- | 792 bytes |
| Shell.hpp | -rw-r--r-- | 2.4 KB |
| ShellID.hpp | -rw-r--r-- | 1.3 KB |
| Single.hpp | -rw-r--r-- | 1.1 KB |
| SpeciesInfo.hpp | -rw-r--r-- | 3.3 KB |
| SpeciesType.cpp | -rw-r--r-- | 970 bytes |
| SpeciesType.hpp | -rw-r--r-- | 2.6 KB |
| SpeciesTypeID.hpp | -rw-r--r-- | 1.7 KB |
| Sphere.hpp | -rw-r--r-- | 5.9 KB |
| SphericalBesselGenerator.cpp | -rw-r--r-- | 4.5 KB |
| SphericalBesselGenerator.hpp | -rw-r--r-- | 740 bytes |
| SphericalSurface.hpp | -rw-r--r-- | 19.9 KB |
| Structure.hpp | -rw-r--r-- | 19.9 KB |
| StructureContainer.hpp | -rw-r--r-- | 38.8 KB |
| StructureFunctions.hpp | -rw-r--r-- | 77.3 KB |
| StructureID.hpp | -rw-r--r-- | 1.6 KB |
| StructureType.cpp | -rw-r--r-- | 1.3 KB |
| StructureType.hpp | -rw-r--r-- | 3.1 KB |
| StructureUtils.hpp | -rw-r--r-- | 7.8 KB |
| Surface.hpp | -rw-r--r-- | 4.4 KB |
| Transaction.hpp | -rw-r--r-- | 14.8 KB |
| Vector3.hpp | -rw-r--r-- | 3.4 KB |
| VolumeClearer.hpp | -rw-r--r-- | 510 bytes |
| World.hpp | -rw-r--r-- | 24.6 KB |
| abstract_set.hpp | -rw-r--r-- | 2.4 KB |
| acinclude.m4 | -rw-r--r-- | 4.6 KB |
| autogen.sh | -rwxr-xr-x | 1.3 KB |
| bd.py | -rw-r--r-- | 3.7 KB |
| bessel.hpp | -rw-r--r-- | 162 bytes |
| compat.h | -rw-r--r-- | 834 bytes |
| configure.ac | -rw-r--r-- | 4.0 KB |
| constants.py | -rw-r--r-- | 1.0 KB |
| datafile.py | -rw-r--r-- | 288 bytes |
| domain.py | -rw-r--r-- | 3.9 KB |
| dumper.py | -rw-r--r-- | 11.1 KB |
| egfrd.py | -rw-r--r-- | 189.8 KB |
| exceptions.hpp | -rw-r--r-- | 2.5 KB |
| factorial.hpp | -rw-r--r-- | 16.9 KB |
| filters.hpp | -rw-r--r-- | 2.5 KB |
| findRoot.cpp | -rw-r--r-- | 1.7 KB |
| findRoot.hpp | -rw-r--r-- | 272 bytes |
| freeFunctions.cpp | -rw-r--r-- | 20.9 KB |
| freeFunctions.hpp | -rw-r--r-- | 2.4 KB |
| funcSum.cpp | -rw-r--r-- | 4.0 KB |
| funcSum.hpp | -rw-r--r-- | 521 bytes |
| generator.hpp | -rw-r--r-- | 14.0 KB |
| geometry.hpp | -rw-r--r-- | 5.0 KB |
| gfrdbase.py | -rw-r--r-- | 36.6 KB |
| gillespie.py | -rw-r--r-- | 16.8 KB |
| greens_function_wrapper.py | -rw-r--r-- | 2.4 KB |
| greens_functions.cpp | -rw-r--r-- | 13.4 KB |
| gsl_rng_base.hpp | -rw-r--r-- | 909 bytes |
| histograms.py | -rw-r--r-- | 4.7 KB |
| legacy.py | -rw-r--r-- | 10.8 KB |
| linear_algebra.hpp | -rw-r--r-- | 12.8 KB |
| loadsave.py | -rw-r--r-- | 37.1 KB |
| logger.py | -rw-r--r-- | 10.9 KB |
| make_cjy_table.py | -rw-r--r-- | 4.7 KB |
| make_sjy_table.py | -rw-r--r-- | 5.4 KB |
| model.py | -rw-r--r-- | 19.7 KB |
| multi.py | -rw-r--r-- | 9.9 KB |
| myrandom.py | -rw-r--r-- | 1.0 KB |
| newBDPropagator.hpp | -rw-r--r-- | 81.4 KB |
| pair.py | -rw-r--r-- | 53.5 KB |
| pyGFRD.cpp | -rw-r--r-- | 5.5 KB |
| shellcontainer.py | -rw-r--r-- | 7.2 KB |
| shells.py | -rwxr-xr-x | 180.5 KB |
| single.py | -rw-r--r-- | 65.6 KB |
| sorted_list.hpp | -rw-r--r-- | 5.8 KB |
| transitiontools.py | -rw-r--r-- | 1.8 KB |
| twofold_container.hpp | -rw-r--r-- | 5.9 KB |
| utils.cpp | -rw-r--r-- | 596 bytes |
| utils.hpp | -rw-r--r-- | 150 bytes |
| utils.py | -rw-r--r-- | 15.2 KB |
