https://github.com/jhbadger/scripts
Tip revision: 6ad694835e70be1c38b4cc13806c5b4361f669fc authored by Jonathan Badger on 12 January 2024, 20:33:42 UTC
report misses in virtualPCR
report misses in virtualPCR
Tip revision: 6ad6948
| File | Mode | Size |
|---|---|---|
| AAI.rb | -rwxr-xr-x | 7.0 KB |
| ANI.pl | -rwxr-xr-x | 3.1 KB |
| Blast.rb | -rwxr-xr-x | 2.3 KB |
| BlastXMLmerge.py | -rwxr-xr-x | 2.6 KB |
| Btab.rb | -rwxr-xr-x | 4.3 KB |
| CDP1802.rb | -rwxr-xr-x | 5.2 KB |
| Chooser.rb | -rwxr-xr-x | 1.0 KB |
| Cluster.rb | -rwxr-xr-x | 570 bytes |
| Codon.rb | -rwxr-xr-x | 659 bytes |
| CodonBias.rb | -rwxr-xr-x | 2.4 KB |
| ColorGradient.rb | -rwxr-xr-x | 682 bytes |
| Colors.rb | -rwxr-xr-x | 922 bytes |
| DownloadGB.pl | -rwxr-xr-x | 520 bytes |
| GA.rb | -rwxr-xr-x | 2.5 KB |
| GBfindOverlaps | -rwxr-xr-x | 1.9 KB |
| GOS.rb | -rwxr-xr-x | 6.4 KB |
| Gff.pm | -rwxr-xr-x | 19.8 KB |
| GreenGenes.rb | -rwxr-xr-x | 823 bytes |
| Grid.rb | -rwxr-xr-x | 3.2 KB |
| Histogram.rb | -rwxr-xr-x | 1.1 KB |
| KarlinBias.rb | -rwxr-xr-x | 3.9 KB |
| LZclusterbySite | -rwxr-xr-x | 1.3 KB |
| MEPipeMakeClustersFromDNA | -rwxr-xr-x | 1.0 KB |
| McCrowTree.rb | -rwxr-xr-x | 3.1 KB |
| Mothur.rb | -rwxr-xr-x | 1021 bytes |
| RogerBlast.rb | -rwxr-xr-x | 1.4 KB |
| Silva.rb | -rwxr-xr-x | 229 bytes |
| Stats.rb | -rwxr-xr-x | 2.9 KB |
| SuffixArray.rb | -rwxr-xr-x | 2.2 KB |
| Taxonomy.rb | -rwxr-xr-x | 1.3 KB |
| TigrGenBank.rb | -rwxr-xr-x | 1.2 KB |
| WOA.rb | -rwxr-xr-x | 60 bytes |
| ZFile.rb | -rwxr-xr-x | 810 bytes |
| abundantKrakenLabels | -rwxr-xr-x | 648 bytes |
| add16SRogersSpreadsheet | -rwxr-xr-x | 1.0 KB |
| addBangLang | -rwxr-xr-x | 466 bytes |
| addFastaAnnotation | -rwxr-xr-x | 467 bytes |
| addMappingIsotigs | -rwxr-xr-x | 819 bytes |
| addNonRedundantGB | -rwxr-xr-x | 592 bytes |
| addOtuInfo100MostWanted | -rwxr-xr-x | 959 bytes |
| addRPKMOrfAnnotationTab.jl | -rwxr-xr-x | 2.7 KB |
| addSpeciesTaxonomy | -rwxr-xr-x | 196 bytes |
| addStrainTaxonomy | -rwxr-xr-x | 2.8 KB |
| addTreePhylaColor | -rwxr-xr-x | 2.9 KB |
| addqTreeInfo | -rwxr-xr-x | 823 bytes |
| alertTime | -rwxr-xr-x | 218 bytes |
| alg2transfac | -rwxr-xr-x | 3.6 KB |
| aliasFasta | -rwxr-xr-x | 480 bytes |
| aliasNewick | -rwxr-xr-x | 259 bytes |
| alignFromBtab | -rwxr-xr-x | 1.3 KB |
| alignHmm | -rwxr-xr-x | 258 bytes |
| alignReferencePhylodb | -rwxr-xr-x | 1.8 KB |
| alignVariation | -rwxr-xr-x | 772 bytes |
| alignmentSummary | -rwxr-xr-x | 678 bytes |
| alphaNum | -rwxr-xr-x | 566 bytes |
| analyzeCombinedComboGos | -rwxr-xr-x | 1.5 KB |
| annotateContigsBtab | -rwxr-xr-x | 478 bytes |
| annotateStephaneVenn | -rwxr-xr-x | 778 bytes |
| annotation-compare | -rwxr-xr-x | 2.7 KB |
| arb2fasta | -rwxr-xr-x | 1.0 KB |
| archiveProject | -rwxr-xr-x | 632 bytes |
| assembleSynCassettes | -rwxr-xr-x | 2.6 KB |
| assemblyStats | -rwxr-xr-x | 1000 bytes |
| autoFindTrees | -rwxr-xr-x | 1.6 KB |
| azw2mobi | -rwxr-xr-x | 517 bytes |
| backAlign | -rwxr-xr-x | 1.1 KB |
| bactBlastCluster | -rwxr-xr-x | 1.6 KB |
| badgerBtab | -rwxr-xr-x | 3.1 KB |
| bam2unmappedfq | -rwxr-xr-x | 458 bytes |
| bamKraken | -rwxr-xr-x | 711 bytes |
| bamSeqOverlap | -rwxr-xr-x | 3.0 KB |
| barbHMPClusterSpreadsheet | -rwxr-xr-x | 1.5 KB |
| batchCdhit | -rwxr-xr-x | 1.0 KB |
| bed2geneCoords | -rwxr-xr-x | 875 bytes |
| bed2gtf | -rwxr-xr-x | 1.4 KB |
| bedOverlap | -rwxr-xr-x | 432 bytes |
| bestHmmTbl | -rwxr-xr-x | 1.2 KB |
| bestRecip | -rwxr-xr-x | 2.8 KB |
| bigCat | -rwxr-xr-x | 197 bytes |
| bigCp | -rwxr-xr-x | 436 bytes |
| bigLS | -rwxr-xr-x | 383 bytes |
| bigMv | -rwxr-xr-x | 436 bytes |
| bigRm | -rwxr-xr-x | 299 bytes |
| binAlignPercentIdents | -rwxr-xr-x | 639 bytes |
| binBamReads | -rwxr-xr-x | 1.2 KB |
| binBarcodedFasta | -rwxr-xr-x | 1016 bytes |
| binBlastMatch | -rwxr-xr-x | 1.3 KB |
| binPsoriasis | -rwxr-xr-x | 911 bytes |
| blast-contigs | -rwxr-xr-x | 1.2 KB |
| blast2Combo | -rwxr-xr-x | 549 bytes |
| blast2GosTable | -rwxr-xr-x | 1.0 KB |
| blast2table | -rwxr-xr-x | 39.5 KB |
| blastClusterStruct | -rwxr-xr-x | 713 bytes |
| blastFindOnlyIn | -rwxr-xr-x | 529 bytes |
| blastLocalAllVsAll | -rwxr-xr-x | 1.2 KB |
| blastSummary | -rwxr-xr-x | 1.7 KB |
| blastSummaryPercentIdentity | -rwxr-xr-x | 1.5 KB |
| blasthitCount | -rwxr-xr-x | 421 bytes |
| blastm82bed | -rwxr-xr-x | 411 bytes |
| btab | -rwxr-xr-x | 3.1 KB |
| btab2Csv | -rwxr-xr-x | 539 bytes |
| btab2m8 | -rwxr-xr-x | 680 bytes |
| buildAmphoraConcatAlignment | -rwxr-xr-x | 799 bytes |
| buildAnthony454ClusterInfo | -rwxr-xr-x | 1.7 KB |
| buildAnthony454Info | -rwxr-xr-x | 1.0 KB |
| buildAnthony454Spreadsheet | -rwxr-xr-x | 2.7 KB |
| buildClassified16SDb | -rwxr-xr-x | 889 bytes |
| buildConcatAlignFromAlign | -rwxr-xr-x | 902 bytes |
| buildCuffGenesTable | -rwxr-xr-x | 1.7 KB |
| buildFastaIndex | -rwxr-xr-x | 446 bytes |
| buildGOSCds | -rwxr-xr-x | 1.8 KB |
| buildGenePresentAbsentMatrix | -rwxr-xr-x | 461 bytes |
| buildHmmConcatTM6 | -rwxr-xr-x | 1.9 KB |
| buildMclGroupsFromAli | -rwxr-xr-x | 567 bytes |
| buildOneWayVennCsv | -rwxr-xr-x | 1018 bytes |
| buildOrthoAli | -rwxr-xr-x | 634 bytes |
| buildPathologic | -rwxr-xr-x | 2.9 KB |
| buildPhyloAlias | -rwxr-xr-x | 572 bytes |
| buildPicrustTabFromMothurTaxSummary | -rwxr-xr-x | 1.6 KB |
| buildReadAPISTable | -rwxr-xr-x | 2.0 KB |
| buildRogerSpreadsheet | -rwxr-xr-x | 2.4 KB |
| buildRoleCategoryFromGB | -rwxr-xr-x | 622 bytes |
| buildSigsTables | -rwxr-xr-x | 4.4 KB |
| buildSilvaRef16SDb | -rwxr-xr-x | 756 bytes |
| buildTCGARsemTable | -rwxr-xr-x | 1.8 KB |
| buildTCGATaxSummary | -rwxr-xr-x | 2.4 KB |
| buildTCGATaxSummaryMetaphlan | -rwxr-xr-x | 1.7 KB |
| buildTCGAmetadata | -rwxr-xr-x | 868 bytes |
| buildTaxItSeq_Info | -rwxr-xr-x | 887 bytes |
| buildTreesVenn | -rwxr-xr-x | 1.1 KB |
| buildVennCsv | -rwxr-xr-x | 4.6 KB |
| bulkSQLiteLoad | -rwxr-xr-x | 476 bytes |
| calcCAI | -rwxr-xr-x | 415 bytes |
| calcSeguid | -rwxr-xr-x | 690 bytes |
| cariMelayu | -rwxr-xr-x | 832 bytes |
| catBlast | -rwxr-xr-x | 535 bytes |
| cdhitParse | -rwxr-xr-x | 912 bytes |
| chatbot.sh | -rwxr-xr-x | 1.1 KB |
| checkAffy | -rwxr-xr-x | 1.1 KB |
| checkTrees | -rwxr-xr-x | 1.2 KB |
| check_interleaved_fastq | -rwxr-xr-x | 2.1 KB |
| circleClusterMap | -rwxr-xr-x | 1.9 KB |
| classify16S | -rwxr-xr-x | 4.1 KB |
| classifyAllHomologs | -rwxr-xr-x | 789 bytes |
| classifyBacMatches | -rwxr-xr-x | 1.2 KB |
| classifyBestHomologs | -rwxr-xr-x | 694 bytes |
| classifyCategories | -rwxr-xr-x | 1004 bytes |
| classifyComboBlast | -rwxr-xr-x | 1.8 KB |
| classifyHmpSeqs | -rwxr-xr-x | 1.2 KB |
| classifyMclClusters | -rwxr-xr-x | 2.1 KB |
| classifyOrthologs | -rwxr-xr-x | 1019 bytes |
| closestCorrelationCodon | -rwxr-xr-x | 1.2 KB |
| cluster2APIS | -rwxr-xr-x | 1.4 KB |
| cluster2CSV | -rwxr-xr-x | 714 bytes |
| clusterBtab | -rwxr-xr-x | 400 bytes |
| clusterDatabaseCSV | -rwxr-xr-x | 2.9 KB |
| clusterMatrix | -rwxr-xr-x | 2.0 KB |
| clusterPhy | -rwxr-xr-x | 1.8 KB |
| clusterSearch | -rwxr-xr-x | 1.9 KB |
| clusterSyn | -rwxr-xr-x | 1.4 KB |
| cogTable | -rwxr-xr-x | 2.4 KB |
| compOrfs | -rwxr-xr-x | 918 bytes |
| compare-orf-lists | -rwxr-xr-x | 1.2 KB |
| compareBranches | -rwxr-xr-x | 1.3 KB |
| compareBtabHits | -rwxr-xr-x | 2.4 KB |
| compareCSV | -rwxr-xr-x | 1.2 KB |
| compareCoords | -rwxr-xr-x | 2.4 KB |
| compareECresults | -rwxr-xr-x | 700 bytes |
| compareGB | -rwxr-xr-x | 1.9 KB |
| compareMooreComboDB | -rwxr-xr-x | 656 bytes |
| comparePanda | -rwxr-xr-x | 782 bytes |
| compareTopologies | -rwxr-xr-x | 704 bytes |
| compareUnmappedPeptides | -rwxr-xr-x | 1.4 KB |
| completeTaxonomy | -rwxr-xr-x | 760 bytes |
| compressSnapMan | -rwxr-xr-x | 558 bytes |
| computeAAcomp | -rwxr-xr-x | 833 bytes |
| computeCodonBias | -rwxr-xr-x | 640 bytes |
| computeMUMI | -rwxr-xr-x | 844 bytes |
| computeN50 | -rwxr-xr-x | 483 bytes |
| condor_muscle | -rwxr-xr-x | 1011 bytes |
| contigSummarize | -rwxr-xr-x | 422 bytes |
| convertAlignment2Apis | -rwxr-xr-x | 426 bytes |
| convertClusteredStap | -rwxr-xr-x | 1011 bytes |
| convertHyphoID | -rwxr-xr-x | 423 bytes |
| convertIDEAPositions | -rwxr-xr-x | 1.1 KB |
| convertLocus | -rwxr-xr-x | 781 bytes |
| convertNCBI2APIS | -rwxr-xr-x | 1.1 KB |
| convertPhatr2TranscriptCSV | -rwxr-xr-x | 1.4 KB |
| convertPhyMLBootStraps | -rwxr-xr-x | 569 bytes |
| convertRDPgb | -rwxr-xr-x | 297 bytes |
| convertSTAP2ggdb | -rwxr-xr-x | 765 bytes |
| convertSilvaToGGFormat | -rwxr-xr-x | 539 bytes |
| copyApisTabsToDepot | -rwxr-xr-x | 599 bytes |
| copyGOSPep | -rwxr-xr-x | 668 bytes |
| copyNestedFiles | -rwxr-xr-x | 1.2 KB |
| copyPeptidesFromTabFile | -rwxr-xr-x | 475 bytes |
| coreGenesAlignment | -rwxr-xr-x | 1.9 KB |
| correlationCol | -rwxr-xr-x | 861 bytes |
| correlationContig | -rwxr-xr-x | 692 bytes |
| correlationOGT | -rwxr-xr-x | 922 bytes |
| cosmacasm | -rwxr-xr-x | 611 bytes |
| countBtabGeneHits | -rwxr-xr-x | 1.0 KB |
| countCol | -rwxr-xr-x | 1.2 KB |
| countGapsAlign | -rwxr-xr-x | 429 bytes |
| createArrayJob | -rwxr-xr-x | 725 bytes |
| createAtt | -rwxr-xr-x | 638 bytes |
| createComboLoadFromFasta | -rwxr-xr-x | 1.5 KB |
| createCoverageListFromPromer | -rwxr-xr-x | 894 bytes |
| createGOSReadTaxTable | -rwxr-xr-x | 1.5 KB |
| createHomologList | -rwxr-xr-x | 523 bytes |
| createIdeaAlignments | -rwxr-xr-x | 1.2 KB |
| createMetaRepFromCSV | -rwxr-xr-x | 5.5 KB |
| createSubLenFasta | -rwxr-xr-x | 675 bytes |
| createTabCommandsFromCSV | -rwxr-xr-x | 531 bytes |
| createTilingPseudoMolecule | -rwxr-xr-x | 1.1 KB |
| createWikiPages | -rwxr-xr-x | 649 bytes |
| csFasta2XSQ | -rwxr-xr-x | 1.9 KB |
| csv2xlsx | -rwxr-xr-x | 1003 bytes |
| csvGrep | -rwxr-xr-x | 718 bytes |
| csvGrepList | -rwxr-xr-x | 545 bytes |
| csvPie | -rwxr-xr-x | 3.4 KB |
| csvSQL | -rwxr-xr-x | 3.2 KB |
| cx-al-unikodo | -rwxr-xr-x | 330 bytes |
| dataPartition | -rwxr-xr-x | 888 bytes |
| delEmptyApisBtab | -rwxr-xr-x | 791 bytes |
| deleteBlastNotInList | -rwxr-xr-x | 703 bytes |
| distribRun | -rwxr-xr-x | 689 bytes |
| dnaGrep | -rwxr-xr-x | 1.8 KB |
| downloadAndProcessGDC | -rwxr-xr-x | 1.3 KB |
| draftDNA2ComboBulk | -rwxr-xr-x | 2.6 KB |
| dropShortFasta | -rwxr-xr-x | 448 bytes |
| dumpDB2tab | -rwxr-xr-x | 1.0 KB |
| dumpMetaTrees | -rwxr-xr-x | 1.0 KB |
| endoTable | -rwxr-xr-x | 2.3 KB |
| ent2glim | -rwxr-xr-x | 820 bytes |
| entSearch | -rwxr-xr-x | 632 bytes |
| estimateMLBranchLengths | -rwxr-xr-x | 2.5 KB |
| eukCoreCSV | -rwxr-xr-x | 1.2 KB |
| eukcdhit | -rwxr-xr-x | 2.4 KB |
| evaluateGlimmerStarts | -rwxr-xr-x | 2.6 KB |
| evaluatePhymm | -rwxr-xr-x | 1.9 KB |
| evaluateWebCarma | -rwxr-xr-x | 1.7 KB |
| exonIntronCoverage | -rwxr-xr-x | 1.5 KB |
| extractAPIS | -rwxr-xr-x | 355 bytes |
| extractBlastAlignments | -rwxr-xr-x | 447 bytes |
| extractBlastFasta | -rwxr-xr-x | 593 bytes |
| extractBlastOrfs | -rwxr-xr-x | 1.5 KB |
| extractBtabHits | -rwxr-xr-x | 719 bytes |
| extractClark | -rwxr-xr-x | 1.1 KB |
| extractClusters | -rwxr-xr-x | 639 bytes |
| extractCulturedGreenGenes | -rwxr-xr-x | 1.1 KB |
| extractDownStreamGFF | -rwxr-xr-x | 1.5 KB |
| extractECnumbers | -rwxr-xr-x | 371 bytes |
| extractGBcds | -rwxr-xr-x | 891 bytes |
| extractGFF | -rwxr-xr-x | 1.7 KB |
| extractGreenGenesFromBodySites | -rwxr-xr-x | 1.2 KB |
| extractGreenGenesFromHMPList | -rwxr-xr-x | 1.1 KB |
| extractKrakenSeqs | -rwxr-xr-x | 1.1 KB |
| extractM8OnFasta | -rwxr-xr-x | 592 bytes |
| extractMclClusters | -rwxr-xr-x | 966 bytes |
| extractMultiBlastAlignments | -rwxr-xr-x | 626 bytes |
| extractORFSFromCoords | -rwxr-xr-x | 717 bytes |
| extractOnColumn | -rwxr-xr-x | 328 bytes |
| extractOnePerSpecies | -rwxr-xr-x | 694 bytes |
| extractOrthGroups | -rwxr-xr-x | 1.2 KB |
| extractPairedUnMappedBamFastq | -rwxr-xr-x | 1.5 KB |
| extractPanGenome | -rwxr-xr-x | 2.1 KB |
| extractSeqMetaGenomeTaxId | -rwxr-xr-x | 1018 bytes |
| extractTreeFromCSV | -rwxr-xr-x | 488 bytes |
| extractUpStreamGFF | -rwxr-xr-x | 2.0 KB |
| extract_phylodb_annotation.pl | -rwxr-xr-x | 5.7 KB |
| fact.elisp | -rwxr-xr-x | 210 bytes |
| factors | -rwxr-xr-x | 444 bytes |
| fangking16S | -rwxr-xr-x | 838 bytes |
| fangking16Sextract | -rwxr-xr-x | 529 bytes |
| farthestClosestNeighborDist | -rwxr-xr-x | 741 bytes |
| fasta-matrix2transfac | -rwxr-xr-x | 1.9 KB |
| fasta2Nexus | -rwxr-xr-x | 1.1 KB |
| fasta2Phylip | -rwxr-xr-x | 794 bytes |
| fasta2Stockholm | -rwxr-xr-x | 963 bytes |
| fasta2clustalTree | -rwxr-xr-x | 182 bytes |
| fasta2fastq | -rwxr-xr-x | 611 bytes |
| fasta2rind | -rwxr-xr-x | 402 bytes |
| fastaAAcomp | -rwxr-xr-x | 1.6 KB |
| fastaAAsubs | -rwxr-xr-x | 2.8 KB |
| fastaAmbigRemove | -rwxr-xr-x | 815 bytes |
| fastaFunctionAdd | -rwxr-xr-x | 793 bytes |
| fastaGetColumn | -rwxr-xr-x | 642 bytes |
| fastaGrep | -rwxr-xr-x | 1.2 KB |
| fastaGrepFile | -rwxr-xr-x | 542 bytes |
| fastaGrepList | -rwxr-xr-x | 679 bytes |
| fastaLengthHistogram | -rwxr-xr-x | 633 bytes |
| fastaSubSet | -rwxr-xr-x | 294 bytes |
| fastq2fasta | -rwxr-xr-x | 704 bytes |
| fastqKraken | -rwxr-xr-x | 1.1 KB |
| fastq_pair_trim.pl | -rwxr-xr-x | 2.7 KB |
| fastq_pos_quality.pl | -rwxr-xr-x | 1.1 KB |
| fcsv.rb | -rwxr-xr-x | 280 bytes |
| fetchBart | -rwxr-xr-x | 159 bytes |
| fetchHmmCombo | -rwxr-xr-x | 638 bytes |
| fetchPhyloSeqs | -rwxr-xr-x | 4.0 KB |
| fillOGT | -rwxr-xr-x | 236 bytes |
| filterAlignment | -rwxr-xr-x | 951 bytes |
| filterAlignmentsForIDEA | -rwxr-xr-x | 2.3 KB |
| filterAmbigOrfs | -rwxr-xr-x | 313 bytes |
| filterBootStrapNewick | -rwxr-xr-x | 466 bytes |
| filterClusterDist | -rwxr-xr-x | 620 bytes |
| filterFastaSize | -rwxr-xr-x | 691 bytes |
| filterFastq | -rwxr-xr-x | 649 bytes |
| filterGC | -rwxr-xr-x | 392 bytes |
| filterLowComplexity.py | -rwxr-xr-x | 1.4 KB |
| filterLowEntropySeqs | -rwxr-xr-x | 1.3 KB |
| filterM8Fasta | -rwxr-xr-x | 555 bytes |
| filterPairedFastq | -rwxr-xr-x | 1.3 KB |
| filterPanMatrix | -rwxr-xr-x | 737 bytes |
| filterParalogsFindTrees | -rwxr-xr-x | 1.1 KB |
| filterSmallOrfs | -rwxr-xr-x | 296 bytes |
| filterrRNAcsv | -rwxr-xr-x | 690 bytes |
| findApisSeq | -rwxr-xr-x | 1.1 KB |
| findBootStrap | -rwxr-xr-x | 2.7 KB |
| findCDS | -rwxr-xr-x | 1013 bytes |
| findCloseGoldGenomes | -rwxr-xr-x | 912 bytes |
| findClosestApisMatch | -rwxr-xr-x | 994 bytes |
| findClosestMatchInDist | -rwxr-xr-x | 710 bytes |
| findCyanoAlphaInBlast | -rwxr-xr-x | 1.0 KB |
| findEntOverlaps | -rwxr-xr-x | 1.2 KB |
| findGoldSilva | -rwxr-xr-x | 945 bytes |
| findHighGC | -rwxr-xr-x | 1.6 KB |
| findInfluenzaAA | -rwxr-xr-x | 1.0 KB |
| findMatchingBtabHits | -rwxr-xr-x | 610 bytes |
| findNCBIPhyAnn | -rwxr-xr-x | 453 bytes |
| findNoTreeAPIS | -rwxr-xr-x | 1.0 KB |
| findOnlyTrees | -rwxr-xr-x | 1.1 KB |
| findOrfPos | -rwxr-xr-x | 1.6 KB |
| findOrigin | -rwxr-xr-x | 2.7 KB |
| findOrthGroups | -rwxr-xr-x | 1.2 KB |
| findOrthoClustersMcl | -rwxr-xr-x | 1014 bytes |
| findParalogs | -rwxr-xr-x | 460 bytes |
| findPepsInGenomes | -rwxr-xr-x | 1.8 KB |
| findPosSites | -rwxr-xr-x | 1.7 KB |
| findPrimer | -rwxr-xr-x | 3.6 KB |
| findProfile | -rwxr-xr-x | 1.0 KB |
| findReadsInScaffolds | -rwxr-xr-x | 576 bytes |
| findSamples | -rwxr-xr-x | 640 bytes |
| findSpeciesInSilva | -rwxr-xr-x | 1.2 KB |
| findTreeRelatives | -rwxr-xr-x | 1.3 KB |
| findTrees | -rwxr-xr-x | 4.3 KB |
| findVibrioContam | -rwxr-xr-x | 955 bytes |
| findWOA | -rwxr-xr-x | 1.2 KB |
| fixCSV | -rwxr-xr-x | 523 bytes |
| fixCondor | -rwxr-xr-x | 460 bytes |
| fixGenBankTblFrames | -rwxr-xr-x | 1.4 KB |
| fixJ | -rwxr-xr-x | 400 bytes |
| fixJDB | -rwxr-xr-x | 162 bytes |
| fixJgiGFF | -rwxr-xr-x | 1.2 KB |
| fixNAST | -rwxr-xr-x | 302 bytes |
| fixPairedReadsIllumina | -rwxr-xr-x | 703 bytes |
| fixPhylosift | -rwxr-xr-x | 720 bytes |
| fixPrefixTaxonomy | -rwxr-xr-x | 839 bytes |
| fixQIIMEMothurClass | -rwxr-xr-x | 441 bytes |
| fixScript | -rwxr-xr-x | 970 bytes |
| fixShortCon | -rwxr-xr-x | 719 bytes |
| fixTigrPlateIDs | -rwxr-xr-x | 580 bytes |
| gatherAncestral | -rwxr-xr-x | 1.1 KB |
| gb2bed.py | -rwxr-xr-x | 1.5 KB |
| gb2fasta | -rwxr-xr-x | 2.9 KB |
| gb2gff | -rwxr-xr-x | 3.6 KB |
| gbGetRNA | -rwxr-xr-x | 1.9 KB |
| gbGrep | -rwxr-xr-x | 1.2 KB |
| gbUpStream | -rwxr-xr-x | 1.3 KB |
| gbfetch | -rwxr-xr-x | 1.1 KB |
| gcHistogram | -rwxr-xr-x | 664 bytes |
| gcPhyloDB | -rwxr-xr-x | 418 bytes |
| gcskew | -rwxr-xr-x | 965 bytes |
| genbank2gff | -rwxr-xr-x | 2.5 KB |
| genbank2tbl.py | -rwxr-xr-x | 2.7 KB |
| genePair | -rwxr-xr-x | 548 bytes |
| generateCollabList | -rwxr-xr-x | 1.1 KB |
| generateMultiAlignment | -rwxr-xr-x | 741 bytes |
| generateOrthologyTable | -rwxr-xr-x | 2.3 KB |
| generateRandomProfile | -rwxr-xr-x | 1.8 KB |
| generateSimExclude | -rwxr-xr-x | 1.1 KB |
| generateVibrioTrees | -rwxr-xr-x | 2.5 KB |
| genomeAlignment | -rwxr-xr-x | 1.2 KB |
| genomeSizeCSV | -rwxr-xr-x | 766 bytes |
| genomeSummary | -rwxr-xr-x | 1.3 KB |
| genomeTreeDist | -rwxr-xr-x | 1.1 KB |
| get16STax | -rwxr-xr-x | 675 bytes |
| getAAfromdNdS | -rwxr-xr-x | 840 bytes |
| getCol | -rwxr-xr-x | 828 bytes |
| getFullLength | -rwxr-xr-x | 493 bytes |
| getGBCombo | -rwxr-xr-x | 628 bytes |
| getGBSpecies | -rwxr-xr-x | 847 bytes |
| getGosPeps | -rwxr-xr-x | 1.7 KB |
| getKeggMaps | -rwxr-xr-x | 738 bytes |
| getNoHomologs | -rwxr-xr-x | 472 bytes |
| getProteinsPhylogenetically | -rwxr-xr-x | 1.4 KB |
| getRibosomalProteins | -rwxr-xr-x | 2.6 KB |
| getRibosomalRNA | -rwxr-xr-x | 1.3 KB |
| getUnmappedReadsGDC | -rwxr-xr-x | 1.5 KB |
| gff2gtf | -rwxr-xr-x | 1.1 KB |
| gff2prot | -rwxr-xr-x | 2.9 KB |
| gffSanityCheck | -rwxr-xr-x | 1.4 KB |
| give_mumi.pl | -rwxr-xr-x | 13.5 KB |
| glossMelayu | -rwxr-xr-x | 2.1 KB |
| glossVolapuek | -rwxr-xr-x | 3.9 KB |
| goFromGosClusterCSV | -rwxr-xr-x | 4.0 KB |
| gosAbundCSV | -rwxr-xr-x | 894 bytes |
| gosBinPeps | -rwxr-xr-x | 1.1 KB |
| gosClusterDistribution | -rwxr-xr-x | 3.1 KB |
| gosClusterEnriched | -rwxr-xr-x | 5.7 KB |
| gosFastaSqlLite | -rwxr-xr-x | 1.3 KB |
| gosHmmDist | -rwxr-xr-x | 2.5 KB |
| gosTaxGrpCSV | -rwxr-xr-x | 782 bytes |
| gosTaxPies | -rwxr-xr-x | 2.2 KB |
| grabAlignPos | -rwxr-xr-x | 1.9 KB |
| grabUrls | -rwxr-xr-x | 478 bytes |
| gtf2geneLength | -rwxr-xr-x | 658 bytes |
| gtfstats | -rwxr-xr-x | 696 bytes |
| heatmap | -rwxr-xr-x | 3.2 KB |
| highqualProcess | -rwxr-xr-x | 782 bytes |
| histo-orf | -rwxr-xr-x | 830 bytes |
| histogram | -rwxr-xr-x | 19.1 KB |
| hmmAli2Fasta | -rwxr-xr-x | 376 bytes |
| hmmAli2clustalTree | -rwxr-xr-x | 314 bytes |
| hmmParse | -rwxr-xr-x | 633 bytes |
| hmmRun | -rwxr-xr-x | 1.3 KB |
| hmmRunSingle | -rwxr-xr-x | 734 bytes |
| hmmpfamFind | -rwxr-xr-x | 1.1 KB |
| hmpDB | -rwxr-xr-x | 389 bytes |
| hmpRDP | -rwxr-xr-x | 1.4 KB |
| idTaxaBySite | -rwxr-xr-x | 2.4 KB |
| inPlaceReplace | -rwxr-xr-x | 832 bytes |
| indexFetch | -rwxr-xr-x | 268 bytes |
| inlineRubyTest | -rwxr-xr-x | 288 bytes |
| interleave_fastq | -rwxr-xr-x | 2.3 KB |
| ionTorrentAlias | -rwxr-xr-x | 1.1 KB |
| isogroupHistogram | -rwxr-xr-x | 756 bytes |
| iterate-critica | -rwxr-xr-x | 5.2 KB |
| joinCSV | -rwxr-xr-x | 925 bytes |
| joinCuffDiff | -rwxr-xr-x | 1.3 KB |
| joinRogerSeqs | -rwxr-xr-x | 876 bytes |
| jskel | -rwxr-xr-x | 841 bytes |
| kingdomSummarize | -rwxr-xr-x | 823 bytes |
| kittyNoEmpty | -rwxr-xr-x | 367 bytes |
| krakTable | -rwxr-xr-x | 1.0 KB |
| labelCircTree | -rwxr-xr-x | 861 bytes |
| labelTaxaInfo | -rwxr-xr-x | 760 bytes |
| lhcProcessXLSX | -rwxr-xr-x | 2.0 KB |
| libgenSearch | -rwxr-xr-x | 48 bytes |
| lineGrep | -rwxr-xr-x | 1.2 KB |
| listPrevProteins | -rwxr-xr-x | 722 bytes |
| m8plus | -rwxr-xr-x | 1.2 KB |
| m8toLCA | -rwxr-xr-x | 2.3 KB |
| mac2unix | -rwxr-xr-x | 1.2 KB |
| make-blastpairs | -rwxr-xr-x | 2.1 KB |
| make16SDistTable | -rwxr-xr-x | 2.3 KB |
| makeAffyGFF | -rwxr-xr-x | 2.8 KB |
| makeBodySiteTrees | -rwxr-xr-x | 949 bytes |
| makeCircularGraph | -rwxr-xr-x | 1.6 KB |
| makeCytoscapeGooglePies | -rwxr-xr-x | 958 bytes |
| makeECatt | -rwxr-xr-x | 723 bytes |
| makeEClist | -rwxr-xr-x | 675 bytes |
| makeGBatt | -rwxr-xr-x | 1.2 KB |
| makeGC3fromCodonW | -rwxr-xr-x | 848 bytes |
| makeGOSLibraryBlasts | -rwxr-xr-x | 1.3 KB |
| makeGOSLibraryFasta | -rwxr-xr-x | 842 bytes |
| makeGOSLibraryList | -rwxr-xr-x | 415 bytes |
| makeGTreeData | -rwxr-xr-x | 468 bytes |
| makeGitRemote | -rwxr-xr-x | 684 bytes |
| makeGlossary | -rwxr-xr-x | 467 bytes |
| makeGosPepBlast | -rwxr-xr-x | 873 bytes |
| makeHMPAlignment | -rwxr-xr-x | 1.0 KB |
| makeHeatMapCsv | -rwxr-xr-x | 1.2 KB |
| makeIPATHList | -rwxr-xr-x | 2.2 KB |
| makeInfluenzaTable | -rwxr-xr-x | 2.3 KB |
| makeLisaClusterTable | -rwxr-xr-x | 1002 bytes |
| makeMapFromRecip | -rwxr-xr-x | 1.3 KB |
| makeMepipeFromBtab | -rwxr-xr-x | 1.0 KB |
| makeMetaDataLabels | -rwxr-xr-x | 556 bytes |
| makeMetabolicPoster | -rwxr-xr-x | 1.2 KB |
| makeMothurTaxonomy | -rwxr-xr-x | 639 bytes |
| makePairedAlignments | -rwxr-xr-x | 875 bytes |
| makeParallelInferVariantsDada2 | -rwxr-xr-x | 1.7 KB |
| makePathoscopeTaxonTable | -rwxr-xr-x | 1.6 KB |
| makePfam2Kog | -rwxr-xr-x | 1.5 KB |
| makeSpSumFromFasta | -rwxr-xr-x | 1.1 KB |
| makeStackedGraphCSV | -rwxr-xr-x | 944 bytes |
| makeStatsTable | -rwxr-xr-x | 720 bytes |
| makeSummaryReadsConditions | -rwxr-xr-x | 2.1 KB |
| makeSybilAlignments | -rwxr-xr-x | 1.4 KB |
| makeSynCassettes | -rwxr-xr-x | 1.3 KB |
| makeTable | -rwxr-xr-x | 1.0 KB |
| makeVizMapGB | -rwxr-xr-x | 434 bytes |
| makeWOAdb | -rwxr-xr-x | 1.1 KB |
| makeregex | -rwxr-xr-x | 1.6 KB |
| map-critica-orfs | -rwxr-xr-x | 1.3 KB |
| mapBWA | -rwxr-xr-x | 992 bytes |
| mapHMP | -rwxr-xr-x | 1.0 KB |
| mapMetaGene2JCVIPep | -rwxr-xr-x | 1.3 KB |
| mapSilvaNCBItax | -rwxr-xr-x | 195 bytes |
| mapTopHat | -rwxr-xr-x | 1.1 KB |
| matchKelpPrimers | -rwxr-xr-x | 1.6 KB |
| matrixPan | -rwxr-xr-x | 1.5 KB |
| mcast | -rwxr-xr-x | 5.6 KB |
| mcl2UnitTable | -rwxr-xr-x | 1.4 KB |
| mclHmmCSV | -rwxr-xr-x | 2.5 KB |
| mclProcessBlast | -rwxr-xr-x | 2.3 KB |
| mclSuperCSV | -rwxr-xr-x | 1.4 KB |
| md2slides | -rwxr-xr-x | 46 bytes |
| mdaCdHitParse | -rwxr-xr-x | 1.0 KB |
| mean | -rwxr-xr-x | 126 bytes |
| med2bib | -rwxr-xr-x | 10.7 KB |
| mergeTables.jl | -rwxr-xr-x | 1.3 KB |
| mergeYuzhen | -rwxr-xr-x | 891 bytes |
| metaGenePeps | -rwxr-xr-x | 3.0 KB |
| mfoldFasta | -rwxr-xr-x | 651 bytes |
| minilisp | -rwxr-xr-x | 6.4 KB |
| mitoProcess | -rwxr-xr-x | 776 bytes |
| modelTest | -rwxr-xr-x | 610 bytes |
| moranCsv | -rwxr-xr-x | 2.1 KB |
| mothurAlignSeqs | -rwxr-xr-x | 1.4 KB |
| mothurClassifySeqs | -rwxr-xr-x | 2.3 KB |
| mothurCountMergeSample | -rwxr-xr-x | 1.1 KB |
| mothurDistSeqs | -rwxr-xr-x | 1.1 KB |
| mothurFilterSeqs | -rwxr-xr-x | 996 bytes |
| mothurPie | -rwxr-xr-x | 2.5 KB |
| mothurScreenSeqs | -rwxr-xr-x | 1.4 KB |
| mothurSummarySeqs | -rwxr-xr-x | 722 bytes |
| motifCount | -rwxr-xr-x | 1.1 KB |
| multiBlat | -rwxr-xr-x | 1.6 KB |
| multirRNAAlign | -rwxr-xr-x | 627 bytes |
| myCoolJoin | -rwxr-xr-x | 683 bytes |
| myLatex2Html | -rwxr-xr-x | 526 bytes |
| nameTree | -rwxr-xr-x | 828 bytes |
| namedGeneFetch | -rwxr-xr-x | 1022 bytes |
| nasAinterpretBlast | -rwxr-xr-x | 1.7 KB |
| ncbitaxID | -rwxr-xr-x | 1.0 KB |
| neighborSummaryPie | -rwxr-xr-x | 3.7 KB |
| noIndexFetch | -rwxr-xr-x | 336 bytes |
| noIndexGBFetch | -rwxr-xr-x | 334 bytes |
| nucWindow | -rwxr-xr-x | 2.1 KB |
| oldSeqSummary | -rwxr-xr-x | 3.2 KB |
| onePerSpeciesFasta | -rwxr-xr-x | 426 bytes |
| orfFinder | -rwxr-xr-x | 1.4 KB |
| pHmmScan | -rwxr-xr-x | 2.9 KB |
| pTmhmm | -rwxr-xr-x | 2.0 KB |
| panNew | -rwxr-xr-x | 968 bytes |
| panStats | -rwxr-xr-x | 955 bytes |
| parseAAindex | -rwxr-xr-x | 812 bytes |
| parseAclame | -rwxr-xr-x | 1.1 KB |
| parseApis | -rwxr-xr-x | 726 bytes |
| parseBACblast | -rwxr-xr-x | 970 bytes |
| parseBart | -rwxr-xr-x | 1.1 KB |
| parseEST | -rwxr-xr-x | 903 bytes |
| parseEbook | -rwxr-xr-x | 1.5 KB |
| parseGenBank2PhyloDB | -rwxr-xr-x | 9.8 KB |
| parseHYPHY | -rwxr-xr-x | 1.4 KB |
| parseHmmscan | -rwxr-xr-x | 1.1 KB |
| parseKegg | -rwxr-xr-x | 452 bytes |
| parseKeggHierarchy | -rwxr-xr-x | 732 bytes |
| parseLisasProbeSet | -rwxr-xr-x | 668 bytes |
| parseMEPipeRst | -rwxr-xr-x | 615 bytes |
| parseMetaPhlan4 | -rwxr-xr-x | 1.4 KB |
| parseMetaSimFna | -rwxr-xr-x | 723 bytes |
| parsePAML | -rwxr-xr-x | 2.0 KB |
| parsePhoneBook | -rwxr-xr-x | 654 bytes |
| parseSTAP | -rwxr-xr-x | 1.0 KB |
| parseSpSum | -rwxr-xr-x | 1.1 KB |
| parseTIGRCoords | -rwxr-xr-x | 328 bytes |
| parseXLSX | -rwxr-xr-x | 490 bytes |
| pblastAllVsAll | -rwxr-xr-x | 1.1 KB |
| pblastNCBI | -rwxr-xr-x | 2.5 KB |
| pcr.seqs | -rwxr-xr-x | 789 bytes |
| pdf2epub | -rwxr-xr-x | 6.6 KB |
| pepPhyloDistroGraph | -rwxr-xr-x | 2.5 KB |
| percentBestBlastHits | -rwxr-xr-x | 896 bytes |
| pfam2go | -rwxr-xr-x | 1.3 KB |
| pfamFastqScan | -rwxr-xr-x | 858 bytes |
| phyloSummary | -rwxr-xr-x | 4.1 KB |
| phyloTypeSummary | -rwxr-xr-x | 1.3 KB |
| pickFromClusters | -rwxr-xr-x | 1.3 KB |
| pickJumpStart | -rwxr-xr-x | 665 bytes |
| pickLongestFasta | -rwxr-xr-x | 592 bytes |
| pickOnePerOrgLisa | -rwxr-xr-x | 367 bytes |
| pickPhylaFastaList | -rwxr-xr-x | 835 bytes |
| pickRandomCsvEntries | -rwxr-xr-x | 851 bytes |
| pickRandomFastaEntries | -rwxr-xr-x | 673 bytes |
| pickRelatives | -rwxr-xr-x | 1.1 KB |
| pickRepsFromTax | -rwxr-xr-x | 1.1 KB |
| pieChart | -rwxr-xr-x | 2.3 KB |
| plasmoAP | -rwxr-xr-x | 667 bytes |
| plot-dist | -rwxr-xr-x | 661 bytes |
| plotFastqQuality | -rwxr-xr-x | 1.4 KB |
| plotFastqReadNum | -rwxr-xr-x | 1022 bytes |
| posmapRarifaction | -rwxr-xr-x | 473 bytes |
| posmapStatistics | -rwxr-xr-x | 2.1 KB |
| predictPathways | -rwxr-xr-x | 1.7 KB |
| prepareDomClust | -rwxr-xr-x | 1.6 KB |
| process454Directory | -rwxr-xr-x | 398 bytes |
| processBackupLibgensql | -rwxr-xr-x | 963 bytes |
| processClusterDist | -rwxr-xr-x | 1.6 KB |
| processCoords | -rwxr-xr-x | 533 bytes |
| processElibrejo | -rwxr-xr-x | 1.5 KB |
| processGOSClusterForDB | -rwxr-xr-x | 554 bytes |
| processGOSHeaders | -rwxr-xr-x | 1.1 KB |
| processGenomeQC | -rwxr-xr-x | 1.3 KB |
| processHTMLAlign | -rwxr-xr-x | 691 bytes |
| processHomologList | -rwxr-xr-x | 1.1 KB |
| processJoc | -rwxr-xr-x | 1.8 KB |
| processJulie | -rwxr-xr-x | 1.7 KB |
| processJumpStart | -rwxr-xr-x | 4.4 KB |
| processLit | -rwxr-xr-x | 1.9 KB |
| processMoran | -rwxr-xr-x | 3.7 KB |
| processPTBlast | -rwxr-xr-x | 2.2 KB |
| processPhyloDBSeqsTreeHeader | -rwxr-xr-x | 525 bytes |
| processProbes | -rwxr-xr-x | 473 bytes |
| processProfile | -rwxr-xr-x | 1.5 KB |
| processSafari | -rwxr-xr-x | 1.1 KB |
| processSwissProt | -rwxr-xr-x | 448 bytes |
| processTopHatCounts | -rwxr-xr-x | 3.9 KB |
| processWeightedPhylip | -rwxr-xr-x | 1.5 KB |
| protGrep | -rwxr-xr-x | 428 bytes |
| prpsblast | -rwxr-xr-x | 1.6 KB |
| pskel | -rwxr-xr-x | 503 bytes |
| ptTable | -rwxr-xr-x | 5.1 KB |
| ptVenn | -rwxr-xr-x | 1.9 KB |
| querySQL | -rwxr-xr-x | 1012 bytes |
| rabundToDiversity | -rwxr-xr-x | 1.0 KB |
| rbeautify | -rwxr-xr-x | 6.7 KB |
| reOrderFasta | -rwxr-xr-x | 321 bytes |
| reRootBatch | -rwxr-xr-x | 508 bytes |
| readHitsCSV | -rwxr-xr-x | 2.8 KB |
| readLenStats | -rwxr-xr-x | 1.0 KB |
| readsNotInPosmap | -rwxr-xr-x | 1.1 KB |
| recruitTree | -rwxr-xr-x | 2.4 KB |
| recurseTaxonomy | -rwxr-xr-x | 3.8 KB |
| reformatFasta | -rwxr-xr-x | 1.1 KB |
| remove16SBlastFnaBtab | -rwxr-xr-x | 907 bytes |
| removeBadReadsFromList | -rwxr-xr-x | 326 bytes |
| removeContigsNotInPosmap | -rwxr-xr-x | 618 bytes |
| removeEmptyBLAST | -rwxr-xr-x | 427 bytes |
| removeFilteredBtab | -rwxr-xr-x | 1.0 KB |
| removeIdentColumns | -rwxr-xr-x | 739 bytes |
| removeThirdBase | -rwxr-xr-x | 367 bytes |
| removeTooShortAlignSeqs | -rwxr-xr-x | 749 bytes |
| renameClusters | -rwxr-xr-x | 883 bytes |
| renameFastaOnFasta | -rwxr-xr-x | 562 bytes |
| renameFilesOnConversionPrefix | -rwxr-xr-x | 585 bytes |
| renameFilesOnTabAlias | -rwxr-xr-x | 656 bytes |
| renameInfluenzaFasta | -rwxr-xr-x | 2.0 KB |
| renameLivingTree | -rwxr-xr-x | 535 bytes |
| renameMetatranscript | -rwxr-xr-x | 866 bytes |
| renameNestedFiles | -rwxr-xr-x | 1.0 KB |
| renameORFS | -rwxr-xr-x | 892 bytes |
| renamePepSpec | -rwxr-xr-x | 869 bytes |
| renameSTAPOutput | -rwxr-xr-x | 766 bytes |
| renameSilvaLKT | -rwxr-xr-x | 906 bytes |
| reorderHeatColumns | -rwxr-xr-x | 926 bytes |
| reorderTable.jl | -rwxr-xr-x | 678 bytes |
| reorientTigrGenome | -rwxr-xr-x | 1.4 KB |
| replaceCol | -rwxr-xr-x | 809 bytes |
| returnVennReps | -rwxr-xr-x | 607 bytes |
| revCompFasta | -rwxr-xr-x | 450 bytes |
| riboOrder | -rwxr-xr-x | 509 bytes |
| rlisp2 | -rwxr-xr-x | 3.7 KB |
| rnaseqSQLprocess | -rwxr-xr-x | 1.7 KB |
| rnaseqSQLreport | -rwxr-xr-x | 2.3 KB |
| rnaseq_lib.rb | -rwxr-xr-x | 1.7 KB |
| rskel | -rwxr-xr-x | 639 bytes |
| runBowtieMapping | -rwxr-xr-x | 957 bytes |
| runCluster | -rwxr-xr-x | 1.1 KB |
| runCodeML | -rwxr-xr-x | 4.2 KB |
| runCuffDiff | -rwxr-xr-x | 2.2 KB |
| runEdgeR | -rwxr-xr-x | 2.0 KB |
| runGBlocks | -rwxr-xr-x | 547 bytes |
| runGrid | -rwxr-xr-x | 906 bytes |
| runHoriz | -rwxr-xr-x | 508 bytes |
| runHybridAssembly | -rwxr-xr-x | 493 bytes |
| runKraken2 | -rwxr-xr-x | 1.2 KB |
| runMetaphlan4 | -rwxr-xr-x | 720 bytes |
| runMultiAaron | -rwxr-xr-x | 867 bytes |
| runProtTest | -rwxr-xr-x | 426 bytes |
| runQiime2 | -rwxr-xr-x | 2.9 KB |
| runTargetP | -rwxr-xr-x | 1.2 KB |
| runTopHat | -rwxr-xr-x | 2.6 KB |
| runTrimmomatic | -rwxr-xr-x | 984 bytes |
| sample_fastq.py | -rwxr-xr-x | 942 bytes |
| scaffoldDistance | -rwxr-xr-x | 1.2 KB |
| scaffoldEnds | -rwxr-xr-x | 514 bytes |
| scaffoldInterpret | -rwxr-xr-x | 837 bytes |
| scaffoldSummary | -rwxr-xr-x | 1.0 KB |
| scriptize | -rwxr-xr-x | 410 bytes |
| selectPrimers | -rwxr-xr-x | 1.8 KB |
| selectTaxRepsCSV | -rwxr-xr-x | 857 bytes |
| sepOnFileFasta | -rwxr-xr-x | 761 bytes |
| separateFastaLengths | -rwxr-xr-x | 820 bytes |
| seqCompare | -rwxr-xr-x | 500 bytes |
| seqDBtoFasta | -rwxr-xr-x | 291 bytes |
| seqIdentity | -rwxr-xr-x | 762 bytes |
| setFastaOrigin | -rwxr-xr-x | 532 bytes |
| shredContigs | -rwxr-xr-x | 891 bytes |
| shuffleFasta | -rwxr-xr-x | 407 bytes |
| silvaTax2unite | -rwxr-xr-x | 760 bytes |
| silvaVirtualPCR | -rwxr-xr-x | 2.0 KB |
| simSeq | -rwxr-xr-x | 897 bytes |
| simulateForwardReverse | -rwxr-xr-x | 735 bytes |
| simulateMarkers | -rwxr-xr-x | 1.1 KB |
| simulateMatrix | -rwxr-xr-x | 1.7 KB |
| simulateOtherUser | -rwxr-xr-x | 638 bytes |
| siteLister | -rwxr-xr-x | 516 bytes |
| sortFasta | -rwxr-xr-x | 317 bytes |
| specAlias | -rwxr-xr-x | 773 bytes |
| splitAlignment | -rwxr-xr-x | 1.4 KB |
| splitApis | -rwxr-xr-x | 1.7 KB |
| splitCSV | -rwxr-xr-x | 661 bytes |
| splitFasta | -rwxr-xr-x | 429 bytes |
| splitGOSPepOnLib | -rwxr-xr-x | 777 bytes |
| splitManifest | -rwxr-xr-x | 888 bytes |
| splitOnAccFasta | -rwxr-xr-x | 696 bytes |
| splitOnPattern | -rwxr-xr-x | 320 bytes |
| splitOnSpeciesFasta | -rwxr-xr-x | 906 bytes |
| splitOrthoFasta | -rwxr-xr-x | 625 bytes |
| splitPseudoMolecule | -rwxr-xr-x | 688 bytes |
| splitRhino | -rwxr-xr-x | 1.2 KB |
| splitTransportDB | -rwxr-xr-x | 549 bytes |
| spritely | -rwxr-xr-x | 1.4 KB |
| sqn2Fasta | -rwxr-xr-x | 1.9 KB |
| stapNewickDraw | -rwxr-xr-x | 801 bytes |
| stapOrRdpPie | -rwxr-xr-x | 2.6 KB |
| stitchFasta | -rwxr-xr-x | 648 bytes |
| stockholm2Fasta | -rwxr-xr-x | 1.4 KB |
| sumCol | -rwxr-xr-x | 1.0 KB |
| summarize454Barcode | -rwxr-xr-x | 1.7 KB |
| summarizeAPISPhylaCounts.pl | -rwxr-xr-x | 847 bytes |
| summarizeApisContigs | -rwxr-xr-x | 2.3 KB |
| summarizeAssembledSTAP | -rwxr-xr-x | 1.5 KB |
| summarizeBlastParalogs | -rwxr-xr-x | 910 bytes |
| summarizeClusteredBlast | -rwxr-xr-x | 1.4 KB |
| summarizeCoreGenesCSV | -rwxr-xr-x | 879 bytes |
| summarizeFindTrees | -rwxr-xr-x | 818 bytes |
| summarizeMetaTranBtab | -rwxr-xr-x | 762 bytes |
| summarizeMetatranscriptome | -rwxr-xr-x | 2.1 KB |
| summarizeMoran | -rwxr-xr-x | 2.1 KB |
| summarizeParalogBlasts | -rwxr-xr-x | 522 bytes |
| summarizePhylodb | -rwxr-xr-x | 1.5 KB |
| summarizeRepeats | -rwxr-xr-x | 872 bytes |
| summarizeReptiles | -rwxr-xr-x | 2.3 KB |
| summarizeSalinispora | -rwxr-xr-x | 1.6 KB |
| summarizeSeqs | -rwxr-xr-x | 1.0 KB |
| summarizeStarts | -rwxr-xr-x | 1.3 KB |
| summarizeTranscripts | -rwxr-xr-x | 1.1 KB |
| summarizeTrees | -rwxr-xr-x | 1.9 KB |
| swarmNIHBlast | -rwxr-xr-x | 3.3 KB |
| swarmNIHDiamond | -rwxr-xr-x | 1.6 KB |
| swarmNIHHmmscan | -rwxr-xr-x | 1.9 KB |
| swarmNIHKraken | -rwxr-xr-x | 1.7 KB |
| swarmNIHTrimmomatic | -rwxr-xr-x | 1.5 KB |
| sybil2IDEA | -rwxr-xr-x | 2.5 KB |
| tab2csv | -rwxr-xr-x | 475 bytes |
| tabSum | -rwxr-xr-x | 518 bytes |
| table2pep | -rwxr-xr-x | 899 bytes |
| taxFileTest | -rwxr-xr-x | 728 bytes |
| taxIzeTree | -rwxr-xr-x | 730 bytes |
| tc_Newick.rb | -rwxr-xr-x | 1.5 KB |
| tcgrep | -rwxr-xr-x | 16.3 KB |
| testColors | -rwxr-xr-x | 1.2 KB |
| thirdPosGC | -rwxr-xr-x | 930 bytes |
| timeLogicBlast | -rwxr-xr-x | 2.6 KB |
| timeLogicFormatDB | -rwxr-xr-x | 1.3 KB |
| timeq | -rwxr-xr-x | 1.2 KB |
| top50MarkerSpecies | -rwxr-xr-x | 3.6 KB |
| topBlast | -rwxr-xr-x | 396 bytes |
| topBlastDB | -rwxr-xr-x | 3.3 KB |
| topBlastHits | -rwxr-xr-x | 791 bytes |
| topologizeTrees | -rwxr-xr-x | 213 bytes |
| trans_htab.pl | -rwxr-xr-x | 279.2 KB |
| transfac2meme | -rwxr-xr-x | 6.3 KB |
| translate | -rwxr-xr-x | 990 bytes |
| translate6frames | -rwxr-xr-x | 1.4 KB |
| translateCDS | -rwxr-xr-x | 1.2 KB |
| translateGlimmer | -rwxr-xr-x | 1.1 KB |
| translateMarkerCSV | -rwxr-xr-x | 651 bytes |
| translateOrfs | -rwxr-xr-x | 656 bytes |
| transporterAnnotation | -rwxr-xr-x | 5.8 KB |
| transporterSubstratesCSV | -rwxr-xr-x | 2.4 KB |
| transporterSummary | -rwxr-xr-x | 2.7 KB |
| treeApisTest | -rwxr-xr-x | 723 bytes |
| treeDistanceList | -rwxr-xr-x | 595 bytes |
| treeOutClusters | -rwxr-xr-x | 1.1 KB |
| treeTest | -rwxr-xr-x | 497 bytes |
| treeinfo.pl | -rwxr-xr-x | 6.4 KB |
| treeinfo2svg.pl | -rwxr-xr-x | 29.6 KB |
| trimAlignment | -rwxr-xr-x | 1.5 KB |
| trimPosAlignment | -rwxr-xr-x | 521 bytes |
| tsvawk | -rwxr-xr-x | 330 bytes |
| unAlias | -rwxr-xr-x | 1.9 KB |
| unAliasFasta | -rwxr-xr-x | 640 bytes |
| unCluster | -rwxr-xr-x | 956 bytes |
| unencryptPDF | -rwxr-xr-x | 311 bytes |
| unidirectional2GenomePanGenome | -rwxr-xr-x | 1.0 KB |
| unikodo-al-ch | -rwxr-xr-x | 726 bytes |
| unikodo-al-l3 | -rwxr-xr-x | 581 bytes |
| unikodo-al-latex | -rwxr-xr-x | 738 bytes |
| uniqIPATH | -rwxr-xr-x | 562 bytes |
| uniqueFastq | -rwxr-xr-x | 934 bytes |
| uniqueifyAccs | -rwxr-xr-x | 362 bytes |
| uniqueifySeqs | -rwxr-xr-x | 1.2 KB |
| upStream | -rwxr-xr-x | 688 bytes |
| updateReRunFastq | -rwxr-xr-x | 481 bytes |
| validateFastqFromMetadata | -rwxr-xr-x | 902 bytes |
| vennGenome | -rwxr-xr-x | 13.4 KB |
| vennUnivenn | -rwxr-xr-x | 2.9 KB |
| virtualPCR | -rwxr-xr-x | 1.8 KB |
| wikipedia | -rwxr-xr-x | 582 bytes |
| wordSkew | -rwxr-xr-x | 1.2 KB |
