https://github.com/josephhughes/Sequence-manipulation
Tip revision: 24663d63b1b9fb681dd0e2ee2ecc51a70b3130a8 authored by josephhughes on 19 September 2023, 14:41:17 UTC
adding remve by id and deduplicate functionality to SelectSeq and changing delimiter from position to _ in ConvertAln2Mat
adding remve by id and deduplicate functionality to SelectSeq and changing delimiter from position to _ in ConvertAln2Mat
Tip revision: 24663d6
| File | Mode | Size |
|---|---|---|
| ASCII_ScarfN.pl | -rw-r--r-- | 808 bytes |
| Consensus.pl | -rwxr-xr-x | 3.7 KB |
| ConvertAln2Constellation.pl | -rw-r--r-- | 5.9 KB |
| ConvertAln2Mat.pl | -rw-r--r-- | 2.1 KB |
| CountAArelativeToRef.pl | -rwxr-xr-x | 6.9 KB |
| CountAmbig.pl | -rw-r--r-- | 1.7 KB |
| CountSynNonSyn.pl | -rw-r--r-- | 6.5 KB |
| ExtractRegionFromFasta.pl | -rwxr-xr-x | 3.1 KB |
| Fasta2Nexus.pl | -rwxr-xr-x | 522 bytes |
| Fasta2Phylip.pl | -rwxr-xr-x | 1.1 KB |
| FastaStats.pl | -rw-r--r-- | 1.4 KB |
| FilterDate.pl | -rwxr-xr-x | 3.6 KB |
| FindAllKmers.pl | -rw-r--r-- | 1.3 KB |
| FreqOfSite.pl | -rwxr-xr-x | 2.9 KB |
| IncrementFastaId.pl | -rwxr-xr-x | 822 bytes |
| ORFfromORFpredictor.pl | -rw-r--r-- | 1.8 KB |
| PaddingSeq.pl | -rwxr-xr-x | 1.8 KB |
| Phylip2Fasta.pl | -rw-r--r-- | 1.0 KB |
| README.md | -rw-r--r-- | 2.3 KB |
| RandomFastaSubset.pl | -rwxr-xr-x | 1.4 KB |
| RemoveDesrc.pl | -rwxr-xr-x | 1.1 KB |
| RemoveGaps.pl | -rwxr-xr-x | 1.1 KB |
| RemoveGapsFast.sh | -rw-r--r-- | 40 bytes |
| RemoveNs.pl | -rwxr-xr-x | 894 bytes |
| RemoveSeqs.pl | -rw-r--r-- | 1.7 KB |
| RenameFastaIDs.pl | -rwxr-xr-x | 902 bytes |
| RenameFastaWithTable.pl | -rwxr-xr-x | 2.2 KB |
| RenameSamIDs.pl | -rwxr-xr-x | 355 bytes |
| RenameSplitByGene.pl | -rwxr-xr-x | 1.1 KB |
| SelectSeq | -rwxr-xr-x | 6.4 MB |
| SelectSeq.pl | -rwxr-xr-x | 10.2 KB |
| SeqLengthDistribution.pl | -rwxr-xr-x | 3.4 KB |
| SeqRenamer.pl | -rw-r--r-- | 3.3 KB |
| SlidingWindowNuc.pl | -rwxr-xr-x | 7.1 KB |
| SplitFasta.pl | -rw-r--r-- | 2.1 KB |
| TranslateWithGaps.pl | -rw-r--r-- | 9.6 KB |
| TrimAlignment.pl | -rw-r--r-- | 2.2 KB |
| UniqSeqs.pl | -rwxr-xr-x | 3.0 KB |
| compareRefs.pl | -rw-r--r-- | 1.2 KB |
| fa2oneline.pl | -rwxr-xr-x | 474 bytes |
| fastaQual2fastq.pl | -rwxr-xr-x | 937 bytes |
| fastq2fastaQual.pl | -rwxr-xr-x | 2.9 KB |
| fastqformatting.pl | -rwxr-xr-x | 915 bytes |
| fq_all2std.pl | -rwxr-xr-x | 5.5 KB |
| gb2fa.pl | -rwxr-xr-x | 1016 bytes |
| hammingdistanceToRef.pl | -rwxr-xr-x | 1.6 KB |
| longestORF.pl | -rwxr-xr-x | 4.2 KB |
| multi2singlelinefasta.pl | -rwxr-xr-x | 353 bytes |
| multi2singlelinefastq.pl | -rwxr-xr-x | 350 bytes |
| newick_to_phyloxml.py | -rw-r--r-- | 1.1 KB |
| sol2fastaqual.pl | -rwxr-xr-x | 884 bytes |
| translate_seq.pl | -rwxr-xr-x | 1.1 KB |
| translate_seq_noIUPAC.pl | -rwxr-xr-x | 1.5 KB |
| weeSAM_coverage.r | -rwxr-xr-x | 1.2 KB |
| weeSAMv1.1 | -rwxr-xr-x | 10.8 KB |
| weeSAMv1.4 | -rwxr-xr-x | 9.6 KB |
