https://github.com/jts/methylation-analysis
Tip revision: 53bc3a86f32086ca49b229e88983ce48aca2ae26 authored by Jared Simpson on 09 January 2017, 16:57:25 UTC
added script to parse CPU time from .stderr files
added script to parse CPU time from .stderr files
Tip revision: 53bc3a8
| File | Mode | Size |
|---|---|---|
| annotations | ||
| models | ||
| .gitignore | -rw-r--r-- | 36 bytes |
| README.md | -rw-r--r-- | 311 bytes |
| annotated_bed_to_tsv.py | -rw-r--r-- | 589 bytes |
| calculate_call_accuracy.py | -rw-r--r-- | 5.9 KB |
| calculate_methylation_at_cpg_islands.py | -rwxr-xr-x | 2.3 KB |
| calculate_methylation_by_distance.py | -rw-r--r-- | 3.7 KB |
| debug_training_plots.R | -rw-r--r-- | 1.0 KB |
| expand_model_alphabet.py | -rw-r--r-- | 2.5 KB |
| generate_kmer_deltas.py | -rw-r--r-- | 1.3 KB |
| generate_training_table.py | -rw-r--r-- | 5.1 KB |
| initialize_model.sh | -rwxr-xr-x | 185 bytes |
| methylate_reference.py | -rw-r--r-- | 1.4 KB |
| methylation_parsers.py | -rw-r--r-- | 5.3 KB |
| methylation_plots.R | -rw-r--r-- | 24.9 KB |
| methylation_region_plot.R | -rw-r--r-- | 11.1 KB |
| methylation_utils.py | -rw-r--r-- | 1.3 KB |
| per_cg_methylation.py | -rw-r--r-- | 1.4 KB |
| phase_extract.py | -rw-r--r-- | 1.6 KB |
| pipeline.make | -rw-r--r-- | 28.6 KB |
| show_compute_time.py | -rw-r--r-- | 758 bytes |
| tsv_to_annotated_bed.py | -rw-r--r-- | 266 bytes |
