https://github.com/jvivian/one_off_scripts
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Tip revision: 3ad04be99cd01e6a047c1b530cc8a1de82bd862e authored by John Vivian on 02 February 2017, 01:31:18 UTC
Refactor SRA pipeline to use faster method than fastq-dump
Tip revision: 3ad04be
File Mode Size
cython
toil_pipelines
.gitignore -rw-r--r-- 6 bytes
boto_lib.py -rw-r--r-- 8.1 KB
calculate_ec2_spot_instance.py -rw-r--r-- 4.0 KB
ccle_data_pipeline.py -rw-r--r-- 2.5 KB
convert_files_to_uuid.py -rw-r--r-- 628 bytes
create-test-inputs.py -rw-r--r-- 2.9 KB
create_config_from_s3.py -rw-r--r-- 1.1 KB
delete_sdb_artifacts.py -rw-r--r-- 488 bytes
download_encrypted_upload_to_s3.py -rw-r--r-- 4.5 KB
encrypt_files_in_dir_to_s3.py -rw-r--r-- 5.2 KB
generate_ssec_url.py -rw-r--r-- 1.9 KB
master_key_generator.py -rw-r--r-- 581 bytes
metrics_from_instance.py -rw-r--r-- 7.0 KB
metrics_postprocess.py -rw-r--r-- 6.2 KB
reencrypt_s3_sample_data.py -rwxr-xr-x 2.4 KB
rename_from_namepair.py -rw-r--r-- 512 bytes
rnaseq-recompute-defuckify.py -rw-r--r-- 4.2 KB
split_interleaved.py -rw-r--r-- 826 bytes
toil-scripts-jenkins.py -rw-r--r-- 1.6 KB
toil_recompute.py -rw-r--r-- 9.5 KB
toil_uber_script.py -rw-r--r-- 15.1 KB
transfer_beatAML_to_s3.py -rw-r--r-- 871 bytes
upload_files_encrypted_to_s3.py -rw-r--r-- 2.4 KB
upload_to_ceph.py -rw-r--r-- 2.2 KB

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