https://github.com/keylabivdc/VIP
Tip revision: d69b5e7615d8da76ef0dd66e51867c8ec42588d4 authored by keylabivdc on 21 February 2017, 03:09:28 UTC
develop notes
develop notes
Tip revision: d69b5e7
File | Mode | Size |
---|---|---|
edirect | ||
installer | ||
.gitattributes | -rw-r--r-- | 378 bytes |
.gitignore | -rw-r--r-- | 574 bytes |
MSA.sh | -rw-r--r-- | 1.2 KB |
README.md | -rw-r--r-- | 3.9 KB |
TaxI.sh | -rw-r--r-- | 1.3 KB |
TreeView.py | -rw-r--r-- | 1.3 KB |
VIP-docker-manual.pdf | -rw-r--r-- | 646.9 KB |
VIP.sh | -rw-r--r-- | 28.0 KB |
assembly.sh | -rw-r--r-- | 2.5 KB |
blast_reads2gi.sh | -rw-r--r-- | 1.1 KB |
blastn_position_depth.py | -rw-r--r-- | 1.1 KB |
coveragePlot.py | -rw-r--r-- | 2.0 KB |
covplot.sh | -rw-r--r-- | 7.8 KB |
create_tmp_table.pl | -rw-r--r-- | 1.3 KB |
distributionCalc.pl | -rw-r--r-- | 917 bytes |
distributionPlot.py | -rw-r--r-- | 2.3 KB |
errorPrint.py | -rw-r--r-- | 770 bytes |
getBestcontig.sh | -rw-r--r-- | 1.2 KB |
get_complete.pl | -rw-r--r-- | 926 bytes |
get_fulllength.sh | -rw-r--r-- | 2.3 KB |
get_genbankfasta.pl | -rw-r--r-- | 2.2 KB |
get_refseq.pl | -rw-r--r-- | 684 bytes |
htmlGen.pl | -rw-r--r-- | 1.5 KB |
oases | -rw-r--r-- | 264.6 KB |
oases_pipeline.py | -rw-r--r-- | 5.5 KB |
parse_tree.pl | -rw-r--r-- | 848 bytes |
phygo.sh | -rw-r--r-- | 2.2 KB |
plot_blast.sh | -rw-r--r-- | 3.4 KB |
preprocess.sh | -rw-r--r-- | 5.1 KB |
prerapsearch | -rw-r--r-- | 862.2 KB |
prinseq-lite.pl | -rw-r--r-- | 186.6 KB |
rapsearch | -rw-r--r-- | 862.2 KB |
seqtk | -rw-r--r-- | 141.6 KB |
table_generator.sh | -rw-r--r-- | 2.5 KB |
taxonomy_classfication.pl | -rw-r--r-- | 1.8 KB |
taxonomy_lookup.pl | -rw-r--r-- | 6.7 KB |
trim_Ref.pl | -rw-r--r-- | 745 bytes |
vip.tt | -rw-r--r-- | 4.5 KB |