https://github.com/sbotond/phylosim
Tip revision: 175ed9f2d4583d9ab3109f88a3021784552f1da1 authored by Botond Sipos on 06 May 2014, 10:42:26 UTC
Added accept/reject handling to substitution processes.
Added accept/reject handling to substitution processes.
Tip revision: 175ed9f
| File | Mode | Size |
|---|---|---|
| PAMLdat | ||
| RData | ||
| cons_test | ||
| examples | ||
| misc | ||
| pkg | ||
| .gitignore | -rw-r--r-- | 78 bytes |
| Alphabet.R | -rw-r--r-- | 22.7 KB |
| AminoAcidMatrices.R | -rw-r--r-- | 18.6 KB |
| AminoAcidSubst.R | -rw-r--r-- | 13.7 KB |
| BinarySubst.R | -rw-r--r-- | 4.5 KB |
| BrownianInsertor.R | -rw-r--r-- | 13.4 KB |
| COPYING | -rw-r--r-- | 685 bytes |
| COPYLEFT | -rw-r--r-- | 34.3 KB |
| CodonAlphabet.R | -rw-r--r-- | 73.2 KB |
| CodonModels.R | -rw-r--r-- | 28.8 KB |
| CodonSubst.R | -rw-r--r-- | 13.5 KB |
| ContinuousDeletor.R | -rw-r--r-- | 13.2 KB |
| ContinuousInsertor.R | -rw-r--r-- | 13.3 KB |
| DiscreteDeletor.R | -rw-r--r-- | 12.5 KB |
| DiscreteInsertor.R | -rw-r--r-- | 13.4 KB |
| EmpiricalCodonMatrices.R | -rw-r--r-- | 3.4 KB |
| Event.R | -rw-r--r-- | 28.1 KB |
| FieldDeletor.R | -rw-r--r-- | 24.5 KB |
| GeneralInDel.R | -rw-r--r-- | 60.7 KB |
| GeneralSubstitution.R | -rw-r--r-- | 52.3 KB |
| Makefile | -rw-r--r-- | 848 bytes |
| NucleotideModels.R | -rw-r--r-- | 115.4 KB |
| PSRoot.R | -rw-r--r-- | 22.6 KB |
| PhyloSim.R | -rw-r--r-- | 164.6 KB |
| PopularAlphabets.R | -rw-r--r-- | 4.2 KB |
| PopularSequences.R | -rw-r--r-- | 52.9 KB |
| Process.R | -rw-r--r-- | 35.2 KB |
| QMatrix.R | -rw-r--r-- | 47.4 KB |
| README.md | -rw-r--r-- | 3.4 KB |
| Sequence.R | -rw-r--r-- | 104.4 KB |
| Site.R | -rw-r--r-- | 39.4 KB |
| ToleranceSubstitution.R | -rw-r--r-- | 53.1 KB |
