https://github.com/shpakoo/YAP
Tip revision: bdcb1da24ef07b48db6065bd65ee927ae314afe7 authored by Dr. Koo on 21 August 2013, 21:37:22 UTC
searching for fragment and fragmentS
searching for fragment and fragmentS
Tip revision: bdcb1da
| File | Mode | Size |
|---|---|---|
| retired | ||
| CDHIT_mothurize_clstr.py | -rwxr-xr-x | 6.9 KB |
| CleanFasta.py | -rwxr-xr-x | 4.2 KB |
| ClusterRename.py | -rw-r--r-- | 5.4 KB |
| ConsTaxonomyPlots.R | -rwxr-xr-x | 33.7 KB |
| ContigCoverageUpdate.py | -rw-r--r-- | 4.2 KB |
| FastQEncoding.py | -rw-r--r-- | 5.8 KB |
| FastaFilter.py | -rw-r--r-- | 4.0 KB |
| FastaUniversalRenamer.py | -rw-r--r-- | 3.7 KB |
| FileStats.R | -rwxr-xr-x | 3.2 KB |
| FilterUnirefClusters.py | -rw-r--r-- | 7.9 KB |
| LICENSE.txt | -rw-r--r-- | 1.1 KB |
| MatchGroupsToFasta.py | -rwxr-xr-x | 5.1 KB |
| MateDemux.py | -rw-r--r-- | 4.7 KB |
| MateFilter.py | -rwxr-xr-x | 3.8 KB |
| MothurCommandInfoWrapper.py | -rwxr-xr-x | 6.8 KB |
| ORFCoverage.py | -rw-r--r-- | 6.2 KB |
| ORFCoverageModifyProk.py | -rw-r--r-- | 2.7 KB |
| ORFweights.r | -rw-r--r-- | 5.6 KB |
| OTUtableMaker.py | -rw-r--r-- | 2.6 KB |
| OtuReadPlots.r | -rw-r--r-- | 11.3 KB |
| PipelineContaminants.py | -rwxr-xr-x | 4.8 KB |
| PrimerClipper.py | -rw-r--r-- | 5.8 KB |
| RemapGroups.py | -rwxr-xr-x | 2.4 KB |
| Retrieve.py | -rwxr-xr-x | 5.2 KB |
| SplitFastX.py | -rwxr-xr-x | 2.5 KB |
| StatFastaFiles.R | -rw-r--r-- | 8.0 KB |
| StatQualFiles.R | -rw-r--r-- | 2.5 KB |
| StepsLibrary.py | -rwxr-xr-x | 58.8 KB |
| StepsLibrary_EXP.py | -rwxr-xr-x | 39.9 KB |
| UngroupFasta.py | -rwxr-xr-x | 4.1 KB |
| YAPBLAST.py | -rw-r--r-- | 6.0 KB |
| YAPDemux.py | -rw-r--r-- | 12.5 KB |
| YAPDemuxedMateAssemble.py | -rw-r--r-- | 7.0 KB |
| YAPDemuxedMateReAssemble.py | -rw-r--r-- | 5.2 KB |
| YAPFastaAssemble.py | -rw-r--r-- | 5.3 KB |
| YAPFastaCleanup.py | -rw-r--r-- | 4.2 KB |
| YAPMascot.py | -rw-r--r-- | 6.9 KB |
| YAPMateAssemble.py | -rw-r--r-- | 6.6 KB |
| YAPORFNormalize.py | -rw-r--r-- | 4.3 KB |
| YAP_454.py | -rw-r--r-- | 30.4 KB |
| YAP_MiSeq.py | -rw-r--r-- | 28.8 KB |
| YAP_devel.py | -rw-r--r-- | 31.5 KB |
| YAPplots.R | -rwxr-xr-x | 17.2 KB |
| alignmentSummary.R | -rwxr-xr-x | 12.3 KB |
| alignmentSummary.py | -rwxr-xr-x | 10.1 KB |
| alignmentTrimmer.py | -rwxr-xr-x | 2.7 KB |
| fastAtrimmer.py | -rwxr-xr-x | 4.0 KB |
| interweaveMates.py | -rwxr-xr-x | 5.8 KB |
| postYAP.py | -rw-r--r-- | 9.8 KB |
| prereqs.R | -rw-r--r-- | 1.4 KB |
| rarefactions.R | -rwxr-xr-x | 5.5 KB |
| traverser.py | -rwxr-xr-x | 8.3 KB |
