https://github.com/tatumdmortimer/popgen-stats
Tip revision: eecdc4b10ea860cfd49e4fd21daa3b93b009350d authored by Tatum Mortimer on 20 July 2018, 14:50:53 UTC
Update snpEffSummary.py
Update snpEffSummary.py
Tip revision: eecdc4b
| File | Mode | Size |
|---|---|---|
| BSP.R | -rwxr-xr-x | 1.1 KB |
| LICENSE.txt | -rw-r--r-- | 1.1 KB |
| LRT.py | -rwxr-xr-x | 484 bytes |
| PlotSFS_CP.R | -rw-r--r-- | 4.9 KB |
| Plot_LL_Grid.R | -rw-r--r-- | 5.6 KB |
| README.md | -rw-r--r-- | 4.3 KB |
| ancestralReconstruction.py | -rwxr-xr-x | 9.2 KB |
| bottlegrowth_dadiAnalysis.py | -rwxr-xr-x | 4.5 KB |
| codonUsage.py | -rwxr-xr-x | 2.1 KB |
| compareStructuralVariants.py | -rwxr-xr-x | 3.3 KB |
| compareVariants.py | -rwxr-xr-x | 2.6 KB |
| createEBSPxml.py | -rwxr-xr-x | 21.5 KB |
| dadiAnalysis.py | -rwxr-xr-x | 10.8 KB |
| dadi_bottlegrowth.py | -rwxr-xr-x | 4.3 KB |
| dadi_bottleneck.py | -rwxr-xr-x | 4.7 KB |
| dadi_expansion.py | -rwxr-xr-x | 3.5 KB |
| dadi_expansionBootstrap.py | -rwxr-xr-x | 2.0 KB |
| dadi_exponentialGrowth.py | -rwxr-xr-x | 3.2 KB |
| dadi_exponentialGrowthBootstrap.py | -rwxr-xr-x | 1.9 KB |
| dadi_likelihoodSurface.py | -rwxr-xr-x | 5.3 KB |
| dadi_neutral.py | -rwxr-xr-x | 1.5 KB |
| genewisePAML.py | -rwxr-xr-x | 3.9 KB |
| ldAnalysis.py | -rwxr-xr-x | 2.8 KB |
| pairwiseDifferences.py | -rwxr-xr-x | 1.7 KB |
| plot_dadi_SFS.R | -rwxr-xr-x | 1.7 KB |
| plot_dadi_expansion.Rmd | -rw-r--r-- | 5.7 KB |
| plotdadiAnalysis.Rmd | -rw-r--r-- | 20.7 KB |
| randomSample_pi.R | -rwxr-xr-x | 2.3 KB |
| ratePlot.R | -rwxr-xr-x | 1.3 KB |
| rep_dadiAnalysis.py | -rwxr-xr-x | 15.4 KB |
| sampleSFS.py | -rwxr-xr-x | 1.7 KB |
| selectionStats.py | -rwxr-xr-x | 5.4 KB |
| selectionStatsPlot.R | -rwxr-xr-x | 1.9 KB |
| siteFrequencySpectra.py | -rwxr-xr-x | 3.0 KB |
| siteFrequencySpectrum.R | -rwxr-xr-x | 1.1 KB |
| slidingWindowStats.py | -rwxr-xr-x | 2.3 KB |
| slimToSFS.py | -rwxr-xr-x | 1.6 KB |
| snpEffSummary.py | -rwxr-xr-x | 3.2 KB |
| subsampleVCF.py | -rwxr-xr-x | 3.3 KB |
