https://github.com/transcript/SAMSA
Tip revision: ccbe48cb0c6979f1d21b53ba80ce1434b76e376f authored by Sam Westreich on 16 December 2019, 21:46:03 UTC
Update README, including information about SAMSA2
Update README, including information about SAMSA2
Tip revision: ccbe48c
| File | Mode | Size |
|---|---|---|
| R_scripts | ||
| public_output_files | ||
| sample_files | ||
| sample_output_files | ||
| Bacteria_Genus_flattened.tsv | -rw-r--r-- | 164.7 KB |
| MG-RAST_API_downloader.py | -rwxr-xr-x | 7.1 KB |
| README.md | -rw-r--r-- | 4.4 KB |
| R_functional_script_w-md5s.Rmd | -rw-r--r-- | 12.1 KB |
| R_organism_script.Rmd | -rw-r--r-- | 10.7 KB |
| RefSeq_output_reducer.py | -rw-r--r-- | 4.0 KB |
| SAMSA_pipeline_documentation.pdf | -rw-r--r-- | 652.7 KB |
| SAMSA_pre_annotation_pipeline.py | -rw-r--r-- | 16.3 KB |
| analysis_counter.py | -rw-r--r-- | 8.4 KB |
| batch_FLASH_trimmomatic_script.bash | -rw-r--r-- | 458 bytes |
| example_bash_script.bash | -rw-r--r-- | 7.6 KB |
| func_data_trimmer.py | -rwxr-xr-x | 2.6 KB |
| functional_search_by_organism.py | -rw-r--r-- | 8.9 KB |
| gpl.txt | -rw-r--r-- | 35.2 KB |
| long_tail_threshold.py | -rw-r--r-- | 3.4 KB |
| md5-R-results-query.py | -rw-r--r-- | 5.8 KB |
| package_install.Rmd | -rw-r--r-- | 545 bytes |
| taxonomy_shifter.py | -rw-r--r-- | 9.7 KB |
| uploader_MG-RAST.py | -rw-r--r-- | 4.2 KB |
| uploader_MG_RAST.py | -rw-r--r-- | 4.2 KB |
