https://github.com/wrf/genomeGTFtools
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Tip revision: 2f4e970306edabe1869df660c55283d07aa49fc9 authored by wrf on 23 November 2023, 05:09:32 UTC
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Tip revision: 2f4e970
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misc
test_data
README.md -rw-r--r-- 30.3 KB
alignmentpos2gff.py -rwxr-xr-x 2.0 KB
blast2genomegff.py -rwxr-xr-x 27.0 KB
blast2gff.py -rwxr-xr-x 7.5 KB
clean_gff.py -rwxr-xr-x 1.5 KB
collate_features.py -rwxr-xr-x 1.1 KB
draw_annotation_blocks.R -rw-r--r-- 4.5 KB
draw_genome_annotation.R -rw-r--r-- 6.9 KB
draw_protein_gtf.R -rw-r--r-- 4.9 KB
extract_coordinates.py -rwxr-xr-x 5.6 KB
make_parent_features.py -rwxr-xr-x 2.8 KB
microsynteny.py -rwxr-xr-x 30.6 KB
microsynteny_to_ortho_pairs.py -rwxr-xr-x 4.8 KB
number_contigs_by_length.py -rwxr-xr-x 4.2 KB
pal2gtf.py -rwxr-xr-x 3.7 KB
pfam2gff.py -rwxr-xr-x 18.3 KB
pfamgff2clans.py -rwxr-xr-x 6.2 KB
pfampipeline.py -rwxr-xr-x 5.6 KB
removeredundantgff.py -rwxr-xr-x 3.6 KB
rename_gtf_contigs.py -rwxr-xr-x 4.5 KB
repeat2gtf.py -rwxr-xr-x 5.1 KB
scaffold_synteny.py -rwxr-xr-x 24.6 KB
synteny_2d_fishers_test.R -rw-r--r-- 5.7 KB
synteny_2d_plot.R -rw-r--r-- 6.1 KB
synteny_2d_w_2nd_genome_sorted.R -rw-r--r-- 7.3 KB
synteny_block_length_plot.R -rw-r--r-- 4.4 KB

README.md

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