| 5bcd358 | Lucia Zhang | 05 April 2024, 13:15:00 UTC | Fix bug in skipTests (#5863) * directly set "commit message without env" and try $characters | 05 April 2024, 13:15:00 UTC |
| f03a1b4 | Steve Von Worley | 04 April 2024, 17:01:24 UTC | fix "weird tags and ids" fuzzing bugs https://ucsc-cgl.atlassian.net/browse/SEAB-6170 | 04 April 2024, 17:01:24 UTC |
| a6313f1 | Steve Von Worley | 04 April 2024, 16:40:01 UTC | accept pairs of internal hyphens/underscores in entry names https://ucsc-cgl.atlassian.net/browse/DOCK-2477 #5715 | 04 April 2024, 16:40:01 UTC |
| c3fd1cb | Lucia Zhang | 04 April 2024, 13:59:50 UTC | Add skipTests documentation (#5861) | 04 April 2024, 13:59:50 UTC |
| 9fbcd28 | Lucia Zhang | 03 April 2024, 13:46:29 UTC | SEAB-5015: Use [skip] to run partial CI build (#5833) * modify (commit message) export [skip] * try moving regex to command [skip] * undo skipped actions, move circleci skip to everything [skip] * change tag name, add unit tests [skipTests] * update intermediate check name (run_full_build) * ignore skipTests condition on develop branch | 03 April 2024, 13:46:29 UTC |
| 45f08cf | dependabot[bot] | 01 April 2024, 18:30:32 UTC | Bump actions/configure-pages from 4 to 5 (#5857) Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5. - [Release notes](https://github.com/actions/configure-pages/releases) - [Commits](https://github.com/actions/configure-pages/compare/v4...v5) --- updated-dependencies: - dependency-name: actions/configure-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 April 2024, 18:30:32 UTC |
| 08ff6f1 | Kathy Tran | 01 April 2024, 13:05:54 UTC | Update ES index after updating AI topic (#5856) https://ucsc-cgl.atlassian.net/browse/SEAB-6007 | 01 April 2024, 13:05:54 UTC |
| 9eef703 | Charles Overbeck | 28 March 2024, 18:15:55 UTC | Verify Java imports are sorted (#5853) Check that impsort plugin was run before commit SEAB-3217 | 28 March 2024, 18:15:55 UTC |
| 8c6524e | Steve Von Worley | 28 March 2024, 16:04:48 UTC | handle "removed" installation_repositories GitHub App event https://ucsc-cgl.atlassian.net/browse/SEAB-6000 | 28 March 2024, 16:04:48 UTC |
| 944ddfe | Kathy Tran | 28 March 2024, 12:05:28 UTC | Add endpoint to upload AI topic & increase max topic length (#5847) https://ucsc-cgl.atlassian.net/browse/SEAB-6007 * Add endpoint to update AI topic * Increase topic length to 250 * Automatically set topic selection to AI if other topics are empty | 28 March 2024, 12:05:28 UTC |
| ab664cb | Steve Von Worley | 25 March 2024, 23:51:55 UTC | add Liquibase lock and Elasticsearch consistency checks https://ucsc-cgl.atlassian.net/browse/SEAB-6225 https://ucsc-cgl.atlassian.net/browse/SEAB-4825 | 25 March 2024, 23:51:55 UTC |
| 6a2a085 | dependabot[bot] | 25 March 2024, 14:35:17 UTC | Bump org.apache.commons:commons-configuration2 from 2.8.0 to 2.10.1 in /bom-internal (#5849) * Bump org.apache.commons:commons-configuration2 in /bom-internal Bumps org.apache.commons:commons-configuration2 from 2.8.0 to 2.10.1. --- updated-dependencies: - dependency-name: org.apache.commons:commons-configuration2 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * new dependency dragged in --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 25 March 2024, 14:35:17 UTC |
| eed5840 | Steve Von Worley | 20 March 2024, 21:19:48 UTC | optimize Notebook and AppTool "my entry" endpoints https://ucsc-cgl.atlassian.net/browse/SEAB-5965 | 20 March 2024, 21:19:48 UTC |
| c294aa0 | Charles Overbeck | 19 March 2024, 21:21:54 UTC | For executions endpoints, fetch workflow version using JPA (#5832) Also use a single(ish) S3Client #5831 | 19 March 2024, 21:21:54 UTC |
| aaaf076 | Denis Yuen | 19 March 2024, 14:29:21 UTC | add workaround (#5841) | 19 March 2024, 14:29:21 UTC |
| 965ec1b | Denis Yuen | 18 March 2024, 15:21:56 UTC | add tests and fix 500s - weird registries and languages (#5838) * add tests and fix 500s | 18 March 2024, 15:21:56 UTC |
| f34564a | Denis Yuen | 15 March 2024, 14:45:20 UTC | what if MyWorkflows (and some related objects) was a record (#5836) * what if MyWorkflows was a record * what if most db helpers were records? | 15 March 2024, 14:45:20 UTC |
| 2a618fa | Denis Yuen | 14 March 2024, 14:41:24 UTC | Feature/param version openapi (#5840) * fix template for openapi * add auto-generated | 14 March 2024, 14:41:24 UTC |
| e6a5182 | Charles Overbeck | 13 March 2024, 22:30:24 UTC | Merge tag '1.15.2' into develop 1.15.2 tag | 13 March 2024, 22:30:24 UTC |
| d889fd0 | Charles Overbeck | 13 March 2024, 21:10:38 UTC | Update artifacts | 13 March 2024, 21:10:38 UTC |
| 23497c3 | Denis Yuen | 13 March 2024, 20:41:42 UTC | fix template for openapi | 13 March 2024, 20:42:45 UTC |
| 63691e6 | Steve Von Worley | 07 March 2024, 19:02:27 UTC | automatically set default version if appropriate https://ucsc-cgl.atlassian.net/browse/SEAB-5195 | 07 March 2024, 19:02:27 UTC |
| 8cb5888 | Kathy Tran | 07 March 2024, 17:33:11 UTC | Record number of skipped executions for aggregated metrics (#5822) https://ucsc-cgl.atlassian.net/browse/SEAB-6046 * Record number of skipped executions * Validate that numerical fields are not negative * Move Execution classes to dockstore common | 07 March 2024, 17:33:11 UTC |
| 4dd671f | Denis Yuen | 07 March 2024, 15:44:00 UTC | upgrade postgres versions (#5812) * upgrade postgres versions | 07 March 2024, 15:44:00 UTC |
| ee3bee5 | Denis Yuen | 07 March 2024, 15:40:37 UTC | Update reference for breaking API changes plugin (#5830) * Update pom.xml | 07 March 2024, 15:40:37 UTC |
| 88b32d1 | Denis Yuen | 04 March 2024, 18:32:46 UTC | Add security checklist checkbox (#5826) * Update PULL_REQUEST_TEMPLATE.md | 04 March 2024, 18:32:46 UTC |
| 6e22551 | Steve Von Worley | 04 March 2024, 18:07:57 UTC | improve error message when scalar is supplied where list is expected https://ucsc-cgl.atlassian.net/browse/DOCK-2468 #5683 | 04 March 2024, 18:07:57 UTC |
| c345b41 | Nayeon Hyun | 01 March 2024, 18:55:19 UTC | SEAB-5910: add topic selection to elasticsearch (#5827) * add topic selection to elasticsearch * update comment | 01 March 2024, 18:55:19 UTC |
| 1e7da37 | Kathy Tran | 28 February 2024, 14:14:59 UTC | Remove deprecated aggregated executions field (#5824) https://ucsc-cgl.atlassian.net/browse/SEAB-6246 | 28 February 2024, 14:14:59 UTC |
| 54338e0 | Lucia Zhang | 27 February 2024, 21:59:04 UTC | SEAB-6266: Update deprecated CircleCI images (#5823) * try bumping linux image to 2023.10.1 * try updating remote docker to docker24 | 27 February 2024, 21:59:04 UTC |
| 9fc2412 | Denis Yuen | 26 February 2024, 19:13:21 UTC | Merge branch 'hotfix/1.15.2' into develop | 26 February 2024, 19:13:21 UTC |
| 19c99aa | dependabot[bot] | 26 February 2024, 15:45:12 UTC | Bump org.apache.commons:commons-compress from 1.24.0 to 1.26.0 in /bom-internal (#5816) * Bump org.apache.commons:commons-compress in /bom-internal Bumps org.apache.commons:commons-compress from 1.24.0 to 1.26.0. --- updated-dependencies: - dependency-name: org.apache.commons:commons-compress dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update related enforced libraries --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 26 February 2024, 15:45:12 UTC |
| 2006206 | Denis Yuen | 26 February 2024, 15:29:56 UTC | Reset version | 26 February 2024, 15:29:56 UTC |
| a62e58c | Denis Yuen | 26 February 2024, 15:27:20 UTC | Update artifacts | 26 February 2024, 15:27:20 UTC |
| 970cbb9 | Denis Yuen | 23 February 2024, 22:22:55 UTC | Fix basic search authors (#5819) * add revealing test * add fix for multiple relevant authors in old search results | 23 February 2024, 22:22:55 UTC |
| 91643fe | Denis Yuen | 23 February 2024, 18:22:00 UTC | fix scala bytecode compilation and make property (#5820) * fix scala bytecode compilation and make property * tie in a couple other likely areas to be missed | 23 February 2024, 18:22:00 UTC |
| 9fadbbf | dependabot[bot] | 22 February 2024, 18:14:23 UTC | Bump org.postgresql:postgresql from 42.4.3 to 42.7.2 in /bom-internal (#5814) * Bump org.postgresql:postgresql from 42.4.3 to 42.7.2 in /bom-internal Bumps [org.postgresql:postgresql](https://github.com/pgjdbc/pgjdbc) from 42.4.3 to 42.7.2. - [Release notes](https://github.com/pgjdbc/pgjdbc/releases) - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md) - [Commits](https://github.com/pgjdbc/pgjdbc/commits) --- updated-dependencies: - dependency-name: org.postgresql:postgresql dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update transitive dependency --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 22 February 2024, 18:14:23 UTC |
| cb6f9dd | Steve Von Worley | 22 February 2024, 16:20:07 UTC | remove deprecated properties from Entry https://ucsc-cgl.atlassian.net/browse/SEAB-6083 | 22 February 2024, 16:20:07 UTC |
| 0de8f19 | Denis Yuen | 16 February 2024, 15:39:45 UTC | Partial update to java 21 (#5805) * iterate dockstore version * test it all with Java 21 * fix version in github actions * just compile with newer scala (but do not use it as a dependency) | 16 February 2024, 15:39:45 UTC |
| 4910d24 | Denis Yuen | 15 February 2024, 15:40:43 UTC | Merge tag '1.15.1' into develop testing out release process | 15 February 2024, 15:40:43 UTC |
| 811c8e8 | Denis Yuen | 15 February 2024, 15:40:36 UTC | Merge branch 'hotfix/1.15.1' | 15 February 2024, 15:40:36 UTC |
| 284dab1 | Denis Yuen | 15 February 2024, 15:40:20 UTC | Reset version | 15 February 2024, 15:40:20 UTC |
| 5e45525 | Denis Yuen | 15 February 2024, 15:37:54 UTC | Update artifacts | 15 February 2024, 15:37:54 UTC |
| f96d36b | Steve Von Worley | 15 February 2024, 15:22:59 UTC | DOCK-2512: Fix pushes of annotated tags (#5809) * fix pushes of annotated tags * add some tests to make sure branch pushes work, comment | 15 February 2024, 15:22:59 UTC |
| 8c96b1b | Denis Yuen | 06 February 2024, 19:54:45 UTC | Merge tag '1.15.0' into develop release | 06 February 2024, 19:54:45 UTC |
| 316fda7 | Denis Yuen | 06 February 2024, 19:54:17 UTC | Merge branch 'release/1.15.0' | 06 February 2024, 19:54:17 UTC |
| 24bdf4d | Denis Yuen | 06 February 2024, 19:53:39 UTC | Reset version | 06 February 2024, 19:53:39 UTC |
| 5bd1911 | Denis Yuen | 06 February 2024, 19:49:42 UTC | Update artifacts | 06 February 2024, 19:49:42 UTC |
| 73a34aa | Denis Yuen | 02 February 2024, 20:12:13 UTC | Merge branch 'release/1.15.0' into develop | 02 February 2024, 20:12:13 UTC |
| ce2337e | Denis Yuen | 02 February 2024, 18:47:35 UTC | Reset version | 02 February 2024, 18:47:35 UTC |
| d8c4b15 | Denis Yuen | 02 February 2024, 18:42:43 UTC | Update artifacts | 02 February 2024, 18:42:43 UTC |
| 6e61804 | Kathy Tran | 02 February 2024, 18:19:13 UTC | Separate execution metrics by status (#5800) https://ucsc-cgl.atlassian.net/browse/SEAB-6199 | 02 February 2024, 18:19:13 UTC |
| 970e4ed | Denis Yuen | 26 January 2024, 18:21:57 UTC | search workflow version as well as default version for authors (#5797) * search workflow version as well as default version for authors * sanity check test | 26 January 2024, 18:21:57 UTC |
| 7b3ffed | Denis Yuen | 25 January 2024, 23:04:23 UTC | Merge branch 'release/1.15.0' into develop | 25 January 2024, 23:04:23 UTC |
| 92be68c | Denis Yuen | 25 January 2024, 23:04:01 UTC | add zenodo patch (#5795) * add patch * Update ZenodoHelper.java | 25 January 2024, 23:04:01 UTC |
| edbb65e | Denis Yuen | 23 January 2024, 22:00:57 UTC | Merge branch 'release/1.15.0' into develop | 23 January 2024, 22:00:57 UTC |
| 05a7424 | Denis Yuen | 23 January 2024, 21:47:01 UTC | Reset version | 23 January 2024, 21:47:01 UTC |
| 43415aa | Denis Yuen | 23 January 2024, 21:44:30 UTC | Update artifacts | 23 January 2024, 21:44:30 UTC |
| fe81bc5 | Kathy Tran | 23 January 2024, 20:11:06 UTC | Fix duplicate validator versions in get aggregated metrics response for "ALL" platform (#5789) https://ucsc-cgl.atlassian.net/browse/SEAB-6183 * Use set for validator versions to remove duplicate response | 23 January 2024, 20:11:06 UTC |
| a159961 | dependabot[bot] | 23 January 2024, 19:51:34 UTC | Bump actions/cache from 3 to 4 (#5787) Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 23 January 2024, 19:51:34 UTC |
| d542752 | Kathy Tran | 19 January 2024, 17:52:22 UTC | Decode s3 key components (#5788) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 | 19 January 2024, 17:52:22 UTC |
| 0fcd0cd | Denis Yuen | 16 January 2024, 21:05:50 UTC | Reset version | 16 January 2024, 21:05:50 UTC |
| 7654cde | Denis Yuen | 16 January 2024, 21:01:52 UTC | Update artifacts | 16 January 2024, 21:01:52 UTC |
| 1355d37 | Kathy Tran | 16 January 2024, 20:49:27 UTC | Add update execution metrics endpoint (#5778) https://ucsc-cgl.atlassian.net/browse/SEAB-5943 | 16 January 2024, 20:49:27 UTC |
| 85bb103 | Kathy Tran | 16 January 2024, 19:46:58 UTC | Add Aborted and Failed statuses, and new endpoint to support ingesting broad metrics (#5768) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 | 16 January 2024, 19:46:58 UTC |
| 5bb0db8 | dependabot[bot] | 15 January 2024, 15:28:05 UTC | Bump org.apache.commons:commons-compress from 1.22 to 1.24.0 in /bom-internal (#5775) * Bump org.apache.commons:commons-compress in /bom-internal Bumps org.apache.commons:commons-compress from 1.22 to 1.24.0. --- updated-dependencies: - dependency-name: org.apache.commons:commons-compress dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 15 January 2024, 15:28:05 UTC |
| 3879929 | Denis Yuen | 11 January 2024, 18:20:13 UTC | clean-up zenodo reference to wrong repo (#5784) | 11 January 2024, 18:20:13 UTC |
| 763132a | Denis Yuen | 11 January 2024, 17:59:39 UTC | Merge branch 'release/1.15.0' into develop | 11 January 2024, 17:59:39 UTC |
| 30f9872 | Steve Von Worley | 10 January 2024, 20:50:09 UTC | add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 | 10 January 2024, 20:50:09 UTC |
| 4bad42b | Steve Von Worley | 10 January 2024, 19:57:17 UTC | reduce memory consumption of TRS tools get https://ucsc-cgl.atlassian.net/browse/SEAB-6100 | 10 January 2024, 19:57:17 UTC |
| 29a4789 | Steve Von Worley | 10 January 2024, 19:56:15 UTC | add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 | 10 January 2024, 19:56:15 UTC |
| 1d22561 | Denis Yuen | 10 January 2024, 15:35:58 UTC | test postgres 13.13 (#5780) * test postgres 13.13 | 10 January 2024, 15:35:58 UTC |
| a4aa717 | Denis Yuen | 03 January 2024, 18:16:45 UTC | avro update (#5772) (#5776) | 03 January 2024, 18:16:45 UTC |
| 0c1fa47 | dependabot[bot] | 03 January 2024, 18:15:54 UTC | Bump github/codeql-action from 2 to 3 (#5770) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/github/codeql-action/compare/v2...v3) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 03 January 2024, 18:15:54 UTC |
| fe29ee5 | dependabot[bot] | 03 January 2024, 15:29:05 UTC | Bump actions/upload-pages-artifact from 2 to 3 (#5774) Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 2 to 3. - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/v2...v3) --- updated-dependencies: - dependency-name: actions/upload-pages-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 03 January 2024, 15:29:05 UTC |
| fb52400 | Denis Yuen | 02 January 2024, 16:55:25 UTC | upgrades, test them (#5772) | 02 January 2024, 16:55:25 UTC |
| 0e99533 | dependabot[bot] | 02 January 2024, 16:54:22 UTC | Bump actions/deploy-pages from 3 to 4 (#5773) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 3 to 4. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 January 2024, 16:54:22 UTC |
| 07f2c2f | Denis Yuen | 18 December 2023, 21:14:16 UTC | enforce entryname is null or nonempty for lambda events - sorting issue (#5769) * make lambda events match workflows for naming | 18 December 2023, 21:14:16 UTC |
| 3c3b4e6 | Denis Yuen | 14 December 2023, 22:30:36 UTC | Merge branch 'release/1.15.0' into develop | 14 December 2023, 22:30:36 UTC |
| 1f59ba3 | Nayeon Hyun | 14 December 2023, 16:56:20 UTC | DOCK-2376: remove deprecated author and email field in Entry (#5706) * Update artifacts * remove author and email field * drop columns * partial revert * make things a bit more backwards compatible for the cli --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 14 December 2023, 16:56:20 UTC |
| b2b9399 | Charles Overbeck | 13 December 2023, 22:13:54 UTC | Review tables for dbcreatedate and dbupdatedate (#5767) SEAB-3083 | 13 December 2023, 22:13:54 UTC |
| 0a4fd86 | dependabot[bot] | 13 December 2023, 19:32:01 UTC | Bump actions/configure-pages from 3 to 4 (#5766) Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 3 to 4. - [Release notes](https://github.com/actions/configure-pages/releases) - [Commits](https://github.com/actions/configure-pages/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/configure-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 13 December 2023, 19:32:01 UTC |
| d358ca0 | dependabot[bot] | 13 December 2023, 19:31:44 UTC | Bump actions/deploy-pages from 2 to 3 (#5765) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 2 to 3. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v2...v3) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 13 December 2023, 19:31:44 UTC |
| c92f92c | Denis Yuen | 08 December 2023, 20:32:39 UTC | Reset version | 08 December 2023, 20:32:39 UTC |
| acd13bf | Denis Yuen | 08 December 2023, 20:29:59 UTC | Update artifacts | 08 December 2023, 20:29:59 UTC |
| 83095ae | Steve Von Worley | 05 December 2023, 00:46:08 UTC | fix nextflow 500 error in getContent() https://ucsc-cgl.atlassian.net/browse/DOCK-2476 https://github.com/dockstore/dockstore/issues/5714 | 05 December 2023, 00:46:08 UTC |
| 021bf96 | Denis Yuen | 01 December 2023, 20:19:49 UTC | fix from https://github.com/dockstore/zenodo-client/pull/27 (#5755) | 01 December 2023, 20:19:49 UTC |
| f827ff7 | dependabot[bot] | 01 December 2023, 16:15:06 UTC | Bump actions/setup-java from 3 to 4 (#5764) * Bump actions/setup-java from 3 to 4 Bumps [actions/setup-java](https://github.com/actions/setup-java) from 3 to 4. - [Release notes](https://github.com/actions/setup-java/releases) - [Commits](https://github.com/actions/setup-java/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/setup-java dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * Update mvnw.yml * Update macos_instructions.yml --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 01 December 2023, 16:15:06 UTC |
| ac56134 | Steve Von Worley | 30 November 2023, 23:46:51 UTC | add endpoint that retrieves an Entry by alias https://ucsc-cgl.atlassian.net/browse/SEAB-6025 | 30 November 2023, 23:46:51 UTC |
| 2284c1a | dependabot[bot] | 30 November 2023, 22:11:49 UTC | Bump ch.qos.logback:logback-classic from 1.4.11 to 1.4.12 in /bom-internal (#5761) * Bump ch.qos.logback:logback-classic in /bom-internal Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-classic dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 30 November 2023, 22:11:49 UTC |
| de3fcd1 | dependabot[bot] | 30 November 2023, 22:11:38 UTC | Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal (#5757) * Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-core dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 30 November 2023, 22:11:38 UTC |
| af389b7 | Charles Overbeck | 30 November 2023, 17:21:37 UTC | Restore disabled BitBucket test (#5762) Needed to adjust for quay.io now being case-sensitive SEAB-2063 | 30 November 2023, 17:21:37 UTC |
| 8e89ee7 | Steve Von Worley | 29 November 2023, 00:33:25 UTC | fix checker workflow configuration methods in Service and Notebook https://ucsc-cgl.atlassian.net/browse/SEAB-6022 | 29 November 2023, 00:33:25 UTC |
| ba09bb2 | Nayeon Hyun | 21 November 2023, 20:51:41 UTC | DOCK-2440: allow null values in sorting in the github apps logs table (#5749) * allow null values in sorting * add entryname in search | 21 November 2023, 20:51:41 UTC |
| 2e734c2 | Steve Von Worley | 21 November 2023, 19:47:14 UTC | don't display certain Events when the referenced entry is unpublished https://ucsc-cgl.atlassian.net/browse/SEAB-5422 | 21 November 2023, 19:47:14 UTC |
| 77df419 | Kathy Tran | 21 November 2023, 14:08:59 UTC | Allow the submission of task metrics (#5738) https://ucsc-cgl.atlassian.net/browse/SEAB-5944 | 21 November 2023, 14:08:59 UTC |
| 077e75a | Steve Von Worley | 18 November 2023, 01:04:05 UTC | remove "dockstore.org" from allowable values for "delete stubbed workflow" endpoint https://ucsc-cgl.atlassian.net/browse/DOCK-1946 #4513 | 18 November 2023, 01:04:05 UTC |
| 70435d1 | dependabot[bot] | 17 November 2023, 18:51:27 UTC | Bump org.json:json from 20230227 to 20231013 in /bom-internal (#5710) * Bump org.json:json from 20230227 to 20231013 in /bom-internal Bumps [org.json:json](https://github.com/douglascrockford/JSON-java) from 20230227 to 20231013. - [Release notes](https://github.com/douglascrockford/JSON-java/releases) - [Changelog](https://github.com/stleary/JSON-java/blob/master/docs/RELEASES.md) - [Commits](https://github.com/douglascrockford/JSON-java/commits) --- updated-dependencies: - dependency-name: org.json:json dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 17 November 2023, 18:51:27 UTC |
| afc2257 | Charles Overbeck | 16 November 2023, 23:56:00 UTC | Only indicate admin/curator for yourself or if you're admin SEAB-5786 I removed the SLIM_USER_FILTER because I noticed that all the fields it's referencing have @JsonIgnore anyway. | 16 November 2023, 23:56:00 UTC |
| e31557b | David Steinberg | 16 November 2023, 21:21:25 UTC | Update cromwell version to latest on jfrog (#5741) * Update cromwell version to latest on jfrog * Add flattened pom * Disable failing BitBucket test --------- Co-authored-by: Charles Overbeck <coverbec@ucsc.edu> | 16 November 2023, 21:21:25 UTC |
