Skip to main content

Browse the archive

https://github.com/jamesagnew/hapi-fhir
14 November 2023, 18:36:22 UTC
sort by:
Revision Author Date Message Commit Date
9dace15 Aditya Dave 13 November 2023, 19:50:11 UTC 5426 enhance bundleutil (#5451) * failing test * fix and more tests * cleanup * spotless * remove class paths * add changelog --------- Co-authored-by: aditya_dave <aditya@smilecdr.com> 13 November 2023, 19:50:11 UTC
777859a Tadgh 10 November 2023, 22:00:08 UTC Rel 6 10 mb (#5441) * Allow cached search with consent active when safe (#5387) Allow the search cache when using consent if safe * Change package installation behaviour such that it updates the existing SearchParameter base with remaining resources (#5376) * Change package installation behavior such that it updates the existing SearchParameter base with remaining resources * Change package installation behavior such that it updates the existing SearchParameter base with remaining resources * Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable. * Use resourceType in the package installer output to fix tests. Minor change with resourceType condition. Update changelog description to make it more readable. * Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning (#5389) * Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - Implementation * Reverse Chaining searches returns an error when invoked with parameter _lastUpdated. (#5177) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * first fix * tests and preliminary fixes * wip, commit before switching to release branch. * adding capability to handle _lastUpdated in reverse search (_has) * adding changelog * applying spotless. * addressing code review comments. --------- Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> * Br 20231019 add cr settings for cds hooks (#5394) * Add settings used in CR CDS Services. Remove config dependency on Spring Boot. * Add changelog * Use String.format rather than concat strings * spotless apply * Add javadoc * Upgrade notes for the forced-id change (#5400) Add upgrade notes for forced-id * Clean stale search results more aggressively. (#5396) Use bulk DMA statements when cleaning the search cache. The cleaner job now works as long as possible until a deadline based on the scheduling frequency. * bump version of clinical reasoning (#5406) * Transaction fails if SearchNarrowingInterceptor is registered and Partitioning Enabled - fix cross-tenant requests failure (#5408) * Transaction with conditional update fails if SearchNarrowingInterceptor is registered and Enabled Partitioning - fix and tests added * removed unused alias from SQL query of mdm-clear (#5416) * Issue 5418 support Boolean class return type in BaseInterceptorService (#5421) * Enable child classes to use Boolean class return type * spotless --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * If AutoInflateBinaries is enabled, binaries are created on the disk only for the first resource entry of the bundle (#5420) * If AutoInflateBinaries is enabled, binaries created on disk by bundled requests are created only for the first resource entry - fix * Revert "Issue 5418 support Boolean class return type in BaseInterceptorService (#5421)" (#5423) This reverts commit 4e295a59fb143a2ba54bc44305474096e2acd578. Co-authored-by: Nathan Doef <nathaniel.doef@smilecdr.com> * Use new FHIR_ID column for sorting (#5405) * Sort `_id` using new FHIR_ID column. * Fix old tests that put client-assigned ids first. * Better indexing for sort * Bump core to 6.1.2.2 (#5425) * Bump core to 6.1.2.1 Patch release that uses https for primary org.hl7.fhir.core package server * Bump core to 6.1.2.2 * Make sure to return always a value for Boolean class return type. (#5424) Implement change in a non-disruptive way for overriders Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Add non-standard __pid SP for breaking ties cheaply during sorts. (#5428) Add a non-standard __pid SP. * Review changes for new _pid SP. (#5430) Change name to _pid to match our standard and add warning. * Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition (#5432) * Fix VersionCanonicalizer conversion from R5 into DSTU2 for CapabilityStatement, Parameters and StructuredDefinition. * Fix spotless issue * CVEs for 6.10.0 (#5433) * Bump jetty * Bump okio-jvm * 8.2.0 mysql connector * Jena and elastic bumps * Fix test * 5412 post bundle on partition incorrect response.link shown (#5413) * Initial fix and unit test provided * spottless check * Made relevant changes to make solution version agnostic * relevant logic changes made * spotless changes made * New logic added to fix failing test cases * formatting * New logic to make the function more robust * spotless checks * Left a trailing slash in the tests * Made relevant test changes and changed logic * spotless changes * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_10_0/5412-during-partition-fullUrl-not-shown-in-response.yaml changing changelog Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> * Formatting requirements --------- Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> * Resolve We don't have guaranteed subscription delivery if a resource is too large (#5414) * first fix * - added the ability to handle null payload to SubscriptionDeliveringMessageSubscriber and SubscriptionDeliveringEmailSubscriber - refactored code to reduce repeated code - cleaned unnecessary comments and reformatted files * Changed myResourceModifiedMessagePersistenceSvc to be autowired * removed unused import * added error handling when inflating the message to email and message subscriber * reformatted code * Fixing subscription tests with mocked IResourceModifiedMessagePersistenceSvc * Changes by gary * Reformatted file * fixed failed tests * implemented test for message and email delivery subscriber. Fixed logical error. Reformatted File. * - implemented IT - fixed logical error - added changelog * fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor * fix for cdr tests, NOTE: this makes the assumption that we will always succeed for inflating the database in the tests that uses SynchronousSubscriptionMatcherInterceptor * resolve code review comments * reformatted files * fixed tests * Fix for failing IT test in jpaserver-starter (#5435) Co-authored-by: dotasek <dotasek.dev@gmail.com> * wip --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Martha Mitran <martha.mitran@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Brenin Rhodes <brenin@alphora.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Nathan Doef <nathaniel.doef@smilecdr.com> Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com> Co-authored-by: dotasek <dotasek.dev@gmail.com> 10 November 2023, 22:00:08 UTC
3bba9fb Ken Stevens 10 November 2023, 19:54:51 UTC add terminology troubleshooting log (#5439) * init rev * init rev * changelog and additional logging * changelog and additional logging * changelog and additional logging * spotless * review feedback 10 November 2023, 19:54:51 UTC
8a39da4 TynerGjs 10 November 2023, 18:51:26 UTC - Added logs when MDM candidate search parameters are not defined and candidate search limit is exceeded. (#5446) - fixed extra indentation for example survivorship rule in quickstart.md 10 November 2023, 18:51:26 UTC
c89fc46 jmarchionatto 31 October 2023, 17:21:35 UTC Add ITermConceptClientMappingSvc interface to represent terminology t… (#5410) * Add ITermConceptClientMappingSvc interface to represent terminology translate functions * Add javadoc --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> 31 October 2023, 17:21:35 UTC
a7a4469 Ken Stevens 26 October 2023, 03:35:20 UTC 5401 add terserutil clear by fhirpath (#5402) * begin with failing test * test passes * test passes * changelog * moar testor 26 October 2023, 03:35:20 UTC
84e3bec longma1 25 October 2023, 17:40:17 UTC 6 8 5 mb (#5399) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * Removal of meta tags during updates do not trigger subscription (#5181) * Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Issue 5173 get gateway everything doesnt return all patients (#5174) * Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Fix link * Remove target slf4j version * dont use new API for a bit (#5191) * Return DropIdGeneratorTask from the Builder to permit clients to mutate the (#5193) DropIdGeneratorTask. * Dqm performance bug update and provider loader fix (#5180) * update tests, move properties, update operation loader * update wip * remove test * fixing tests, adding config * update config and provider loader * fix bundles * fix cache settings on tests * version bump and change log * version bump * fix formatting * CVE-2022-45868 * wip cve change * cve h2 add back in --------- Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> * bulkExportReuse with POST and GET (#5161) * string manipulation * Code to ensure bulkExportReuse works with POST and GET requests * Added formatting changes * Fixed tests that were not working * Formatting * Code clean up * fixing test failures * fixing test failures * Removed arrOfParams to now utilize ObjectMapper * Removing stack trace and adding an exception * Fixed test issue * formatting * formatting * Resolving code review comments * Reduce size of subscription max results (#5194) * Reduce MAX_SUBSCRIPTION_RESULTS to 10000 * Add changelog * 5037 goldenresource remains when target resource deleted (#5038) * draft test and fix * remove unused fields * remove unused fields * remove unused fields * draft test + solution for possible match case * combine sql statement + more error checking * add test case for possible duplicate * add config for autodeleting grs * refactoring, adding support for mongo, docs * refactoring + fixing mongo queries * add changelogs * fix both way link removal * clean up test comments * rename method * remove unnecessary bean * merge master/resolve conflicts * mvn spotless * address comment * changes to avoid version bumping * spotless * change error code --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * dont use new API for a bit (#5190) * licenses * Fixing terminology upload with large file. (#5204) * create initial test * adding fix; adding changelog; * fixing format. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * up version to 6.8.0 from snapshot * fix up some duplicate deps for skipping * Force deployment of other projects * make dummy java class to pass sonatype checks * make dummy java class to pass sonatype checks * Cheeky test removal * Another test removal * Updating version to: 6.8.1 post release. * adding back in tests for release pipelines * Fix bad version insert * Bump to core library version 6.0.22.2 (#5261) * Bump to core library version 6.0.22.2 * Bump HAPI to 6.8.1-SNAPSHOT, core library version to 6.0.22.2 * up version to 6.8.1 * Prevent remote deployment * Updating version to: 6.8.2 post release. * Re-add deploy plugin skip * re-add version * Bump core library version to 6.0.22.2 * Bump HAPI to 6.8.2-SNAPSHOT * Fix up version enum * Version bump * Updating version to: 6.8.3 post release. * Make display name validation configurable (#5321) * Test fixes * Build cleanup * Initial test passing * Test fixes * Tests all seem to be working * Make display validation level configurable * Should be all working * Add changelog * Add to changelog --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> * wip * wip * Fix conflicts * add backport info * Fix versioning * test fixes * disabled 1 test * backported 5271 to fix validation message tests * wip * Changelog * Fix tests * Fix backport * Add upgrade.md * Fix test * Fix key * Updating version to: 6.8.4 post release. * 5353 iterate on revincludes and includes does not return correct resources when used with non iterate revincludes (#5354) * added failing test * implemented solution * added doc generation * added changelog * fixed the order of includes and revincludes, based on what was implemented before * fixed formatting * fixed wording --------- Co-authored-by: Steven Li <steven@smilecdr.com> * added changelog * Updating version to: 6.8.5 post release. * merge back 5377 * changelog * undo unintended changes from mergeback --------- Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: markiantorno <markiantorno@gmail.com> Co-authored-by: volodymyr <volodymyr.korzh@smilecdr.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: StevenXLi <stevenli_8118@hotmail.com> Co-authored-by: Steven Li <steven@smilecdr.com> 25 October 2023, 17:40:17 UTC
1776a8a Tadgh 21 October 2023, 16:35:21 UTC Bump version (#5386) 21 October 2023, 16:35:21 UTC
953f735 michaelabuckley 20 October 2023, 17:26:24 UTC Review changes for #4803 (#5381) review changes 20 October 2023, 17:26:24 UTC
ee36926 michaelabuckley 20 October 2023, 16:14:31 UTC Move forced-id to HFJ_RESOURCE - step 2 (#4803) * First cut at forced-id step 2 Start using new fhir_id column in hfj_resource instead. * demote fixme for build * Start changelog * Merge cleanups * forced-id migration various fixme cleanups * checkstyle * fix bad conversions to computeIfAbsent * Ugh. Lame checkstyle. * Revert optimistic null assert * missed import. * Fixup broken tests * Fix invalid test * Add missing index annotation 20 October 2023, 16:14:31 UTC
af1d46f TipzCM 20 October 2023, 13:56:32 UTC adding additional logging to resource modified submitter svc (#5370) * adding additional logging to resource modified submitter svc * s[otlestt * review fixes * spotless * fixing test --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home> 20 October 2023, 13:56:32 UTC
20c8109 James Agnew 20 October 2023, 10:51:35 UTC Speed up subscription triggering (#5377) * Improve subscription trigger speed * Speed up subscription triggering * Add changelogf * Spotless * Move changelog 20 October 2023, 10:51:35 UTC
e2ca967 michaelabuckley 19 October 2023, 13:18:01 UTC Force _summary=false when fetching CodeSystems and ValueSets with remote terminology (#5372) Force _summary=false when fetching CodeSystems and ValueSets with remote terminology 19 October 2023, 13:18:01 UTC
25ce7d0 Tadgh 16 October 2023, 19:16:58 UTC fix broken version 16 October 2023, 19:16:58 UTC
90bfe05 Tadgh 16 October 2023, 12:19:16 UTC Fix version enum (#5352) * Fix version enum * Add license 16 October 2023, 12:19:16 UTC
c832cf0 Justin McKelvy 11 October 2023, 18:47:52 UTC Hapi cr codecache (#5360) * WIP code cache config * WIP test * Passing unit test * cachelistener IT * hardening cache listener tests * cache listener fixes & tests, measureService migration, add reporter parameter to r4 * fix ELMCache listener to match on version, update test, remove reporter parameter * edit inline notes * changelog, version bump, spotless apply --------- Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> 11 October 2023, 18:47:52 UTC
88e9780 James Agnew 11 October 2023, 00:36:33 UTC Add additional resource docs to generated OpenAPI documentation (#5359) * Add additional resource docs to generated OpenAPI documentation * Test fix 11 October 2023, 00:36:33 UTC
424f26b c-schuler 10 October 2023, 15:13:21 UTC Removed helperSvc bean override from JpaConfig (#5350) * Removed helperSvc bean override from JpaConfig * Added change log entry 10 October 2023, 15:13:21 UTC
02f25a9 TynerGjs 06 October 2023, 20:30:44 UTC typo fix (#5358) 06 October 2023, 20:30:44 UTC
12519bd StevenXLi 06 October 2023, 15:54:26 UTC 5353 iterate on revincludes and includes does not return correct resources when used with non iterate revincludes (#5354) * added failing test * implemented solution * added doc generation * added changelog * fixed the order of includes and revincludes, based on what was implemented before * fixed formatting * fixed wording --------- Co-authored-by: Steven Li <steven@smilecdr.com> 06 October 2023, 15:54:26 UTC
e5f700f Etienne Poirier 05 October 2023, 16:40:16 UTC 5344 $expunge operation fails when the operation is executed on a specific partition (#5347) * initial failing test. * solution with changelog * fixing pom dependency version * fixing pom circular dependency issue and making the new wrapper class generic. * Fixing tests assertion. * Moving test to solve dependency issues. * addressing code review comments. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> 05 October 2023, 16:40:16 UTC
743e2c1 Brenin Rhodes 03 October 2023, 11:15:32 UTC Add Registries for CDS CR Services (#5342) * Add registries for CdsCrServices and CrDiscoveryServices to allow registration of custom services * Add changelog * Fix broken find method * Fix crDiscoveryServiceFactory 03 October 2023, 11:15:32 UTC
4e9bd15 StevenXLi 02 October 2023, 15:32:58 UTC 5339 bulk export errors when patient compartment searchparameter of the resource is not present (#5340) * added failing test * implemented solution, and fixed test * added changelog * fixed formatting * fixed test not passing * fixed test and formatting * added warning for failing the active search param check * code review change --------- Co-authored-by: Steven Li <steven@smilecdr.com> 02 October 2023, 15:32:58 UTC
5411622 JasonRoberts-smile 02 October 2023, 13:23:42 UTC add exclusions to terser reference method (#5343) 02 October 2023, 13:23:42 UTC
7e0fa98 TipzCM 29 September 2023, 13:23:11 UTC adding metrics (#5301) * hapi metrics * step 1 * metrics service * adding metrics service * adding documentation * refactor * refactoring * cleanup * changing * adding changelog * some refactoring * format * review fixes part 1 * review points * review fixes * updates for code review * updates for code review * bumping versions --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> 29 September 2023, 13:23:11 UTC
c3ff3da TynerGjs 27 September 2023, 19:01:45 UTC Resolve 5336 Mdm Link History Would Fail If Provided with Unknown Ids On Postgres (#5337) * - Added checks in MdmLinkDaoJpaImpl to make sure no empty IN clauses are sent to database. - Implemented tests for the above change. * modified changelog 27 September 2023, 19:01:45 UTC
a220465 Brenin Rhodes 27 September 2023, 17:34:57 UTC Implement CDS on FHIR in CDS Hooks (#5240) * WIP * WIP refactor * Initial commit * measureRefactor WIP * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * adding tests WIP * Rework MeasureServiceFActory * measure refactor WIP * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * generic provider loader * provider loader update * tests wip * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * measureRefactor tests WIP * update tests wip * remove baseCrR4Test * update imports * add paging provider config to tests * dstu3 tests * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * latest work * cleanup * Refactor operation providers to support use in multiple modules * Fix HFQL docs (#5151) * repository measure refactor * undo bundle edit, add config * embedded library true * undo post of bundle * clear library cache on test * fix sumbit-data test * Fix tests * cleanup * Update MeasureService.java * latest * 3.0.0 engine update * merge cleanup * cr updates * cleanup * Only create services for PlanDefs that have a trigger with a named event * Fix parameters being sent through invoke * Handle system actions * cleanup * missing packages from cql * fix test data and test cases for repository api * latest * fix pom * fix test config * cleanup * 3.0.0 clinical reasoning uplift * r4 cql execution provider and tests * fix submitdata provider config * wip cql tests * debugging cql op wip * wip debugging cql * update tests for $cql, fix class names * prep for Pre6 uplift * spotless checks and test fixes * bump to 3.0.0-PRE6 * cleanup * fix version * cleanup * cleanup * fix exlusions in pom * add in cache invalidation config * fix resource resolution * cleanup * search converter bug and test for repository * update pom * update searchconverter * version bump, add changelog * remove term config, move IDaoRegistryUser class * Break out dstu3 providers and move config to version folders * merge cleanup * merge cleanup * Add changelog * spotless * fix error codes * cleanup * cleanup * Handle missing beans in Operation configs * spotless * Use CondtionalOnBean for CR Operation and Repository configs * Fix test config * Add RepositoryFactory and RestfulServer to CdsConfigService * Move createRequestDetails into CdsConfigService * spotless * review comments --------- Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> 27 September 2023, 17:34:57 UTC
6ee6031 Etienne Poirier 26 September 2023, 17:56:13 UTC CapabilityStatement doe not declare conformance to IG when a bulk data export provider is registered. (#5329) * adding initial test * adding initial test * solution implementation * spotless apply * bumping to 6.9.8-SNAPSHOT * addressing comments from review and fixing typo * spotless --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> 26 September 2023, 17:56:13 UTC
bc0ee99 TynerGjs 25 September 2023, 14:44:36 UTC Resolve MDM query links operation score field imprecise value (#5332) * - Fixed precision error and rounded to 4 decimal places - Removed the vector field from the return value of mdmlink toJSON - modified tests for the above changes. * changed to use BigDecimal instead of Precision to round score * reformatted file 25 September 2023, 14:44:36 UTC
10d9d96 Tadgh 23 September 2023, 00:55:23 UTC Binary storage prefix during update (#5334) * wip * Changelog * Fix tests 23 September 2023, 00:55:23 UTC
6a0b279 Justin McKelvy 22 September 2023, 23:51:36 UTC 5089 cr measure refactor (#5324) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * repository measure refactor * undo bundle edit, add config * embedded library true * undo post of bundle * clear library cache on test * fix sumbit-data test * missing packages from cql * fix test data and test cases for repository api * 3.0.0 clinical reasoning uplift * r4 cql execution provider and tests * fix submitdata provider config * wip cql tests * debugging cql op wip * wip debugging cql * update tests for $cql, fix class names * prep for Pre6 uplift * spotless checks and test fixes * bump to 3.0.0-PRE6 * cleanup * fix version * cleanup * fix exlusions in pom * add in cache invalidation config * search converter bug and test for repository * update searchconverter * version bump, add changelog * remove term config, move IDaoRegistryUser class * Break out dstu3 providers and move config to version folders * CVE-2023-26119 * remove * imports * code review updates --------- Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> Co-authored-by: Brenin Rhodes <brenin@alphora.com> 22 September 2023, 23:51:36 UTC
0049319 TipzCM 22 September 2023, 17:23:43 UTC updating partition interceptor to allow multiple patient ids (#5326) * updating partition interceptor to allow multiple patient ids * spotless --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> 22 September 2023, 17:23:43 UTC
cfa5e2e VK-SMILECDR 21 September 2023, 19:51:37 UTC 5327 improve error code 1227 message (#5328) * Improve error code 1227 message * spotless 21 September 2023, 19:51:37 UTC
2b7ebbc James Agnew 19 September 2023, 22:25:33 UTC Make display name validation configurable (#5321) * Test fixes * Build cleanup * Initial test passing * Test fixes * Tests all seem to be working * Make display validation level configurable * Should be all working * Add changelog * Add to changelog --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> 19 September 2023, 22:25:33 UTC
50d2eac dotasek 19 September 2023, 18:58:25 UTC Update codeql-analysis.yml (#4973) * Update codeql-analysis.yml * Update checkout version in codeql-analysis.yml 19 September 2023, 18:58:25 UTC
9f9aeb9 dotasek 19 September 2023, 18:26:20 UTC Bump core version to 6.1.2 (#5317) * WIP Fix compile errors * Fix compile errors 2 * Fix test fails due to new Validation messages * Ignore validation issues Ignore two validation issues: Two 'side is inherently a collection' warnings are now thrown for the following expressions: NamingSystem nsd-1 uniqueId.type = 'uuid' Observation obs-7 code != component.code There is also a general error ignored because the StructureDefinition for StructureDefinition is actually for FHIR 3.0.1, and contains an invalid expression in constraint sdf-9. This is remedied in the expression used in 3.0.2, but a full update of all profile structure definitions is out of scope for this PR. * Fix property name * Add changelog 19 September 2023, 18:26:20 UTC
8d4f07c TynerGjs 19 September 2023, 16:15:47 UTC Resolve 5262 adding new parameter strictmatch to the mdm history link operation 1 (#5282) * implemented the strictMatch parameter, added corresponding test * implemented the strictMatch parameter, added corresponding test * updated mdm link history documentation created changelog * reverted previous changes. Made the default behaviour of history link as AND instead of OR * optimized imports * modified changelog * modified tests 19 September 2023, 16:15:47 UTC
7eb3150 dotasek 19 September 2023, 15:56:01 UTC Update DSTU 3 Validation resources (#5320) * Update resources with FHIR 3.0.1 * Minimize profiles * Minimize valuesets * Restore minimizer * Changelog * Remove FIXME, improve specificity of comments 19 September 2023, 15:56:01 UTC
49a28ef Tadgh 19 September 2023, 14:01:33 UTC 5290 - Feature Request - Implement toggle to prevent conditional updates from invalidating match criteria. (#5291) * Test skeleton, TODO IMPLEMENTER added all over the place * Add test and TODO IMPLEMENTER * Add jpa storage property to allow preventing conditional updates to invalidate match criteria * spotless * Implement review suggestions --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> 19 September 2023, 14:01:33 UTC
67e4216 Etienne Poirier 18 September 2023, 13:08:45 UTC Reindex operation fails when operation is executed on a specific partition (#5311) * adding initial test. * adding solution * adding changeLog. * satisfying spotless check. * fixing changelog * addressing code review comments. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> 18 September 2023, 13:08:45 UTC
43e45db longma1 15 September 2023, 20:36:48 UTC Rel 6 6 2 mb (#5315) * Force Verify tests * fix ITs (#4809) * fix RestHookTestR5IT * fix intermittent --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> * Fix migrator error on Oracle (#4814) * Fix Oracle SQL error * Add changelog * Update clinical reasoning version (#4816) * Update clinical reasoning version * Update version * Update version * Clean-up and more wireup of evaluationSettings * Add changelog --------- Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> * Opening the care-gaps endpoint for GET. (#4823) Co-authored-by: Chalma Maadaadi <chalma@alphora.com> * added version to mdm golden resource tag (#4820) Co-authored-by: Long Ma <long@smilecdr.com> * Update the changelog for 4697 to be more descriptive (#4827) * Update the changelog for 4697 to be more descriptive * Futher tweaks of the changelog * Fixes a bug with tags. (#4813) * Test, fix * Drop constraint, add migration * Add changelog * Fix userSelected null vs false * Fix merge * Fix up checkstyle whining * One more failure * Fix test * wip * changelog clarity Co-authored-by: James Agnew <jamesagnew@gmail.com> * change index --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> * fix migration issue (#4830) Co-authored-by: Ken Stevens <ken@smilecdr.com> * Create correct version enum * Remove superfluous migration * fixing test (#4835) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * email subscription, throw NullPointerException (#4790) * fix bug * Favoring constructor initialization to autowiring. * enhancing test. * Making class LoggingEmailSender available outside of the hapi-fhir-japserver-uhnfhirtest module. * Passing all tests. * adding changelog. * Bumping version to 6.5.20-SNAPSHOT * addressing code review comment. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Add docs for CR operations (#4855) * Add docs for CR operations * Correct changelog and javadoc for $package * Add documentation for $apply parameters * Add additional documentation for $package * Cleanup * Cleanup * Cleanup * Address review comments * Add documentation for $care-gaps operation. (#4862) * Add documentation for -gaps. * addressing the comments. --------- Co-authored-by: Chalma Maadaadi <chalma@alphora.com> * 4853 validation does not error when display is not the same as the display defined in the codesystem 2 (#4854) * added failing test * implemented the solution * changed test name * added change log * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_6_0/4853-validation-does-not-error-when-display-is-not-the-same-as-the-display-defined-in-the-codesystem-2.yaml Co-authored-by: James Agnew <jamesagnew@gmail.com> --------- Co-authored-by: Steven Li <steven@smilecdr.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> * fixing patient everything operator (#4845) * fixing patient everything operator * review fix --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * fix link * Move image file * Bundle resources containing over 100 references to the same Organization will fail with HAPI-2207 (#4871) * Add failing unit test. * Fix JpaId Long equality comparison to use ! equals() instead of !=, which fails for different instances of the same Long value. * Add changelog. * added warn message and test (#4848) * added warn message and test * code review fixes --------- Co-authored-by: Long Ma <long@smilecdr.com> * Issue 4804 full table scan on mpi link during mdm clear (#4805) * version bump for next release (#4793) * version bump * Bump to correctnumber * Version Enum and folder * Remove interim from list * wip * Fix operation on nested type-choices in FhirPatch implementation (#4783) * Fix operation on nested type-choices in FhirPatch implementation * Add credit for #4783 --------- Co-authored-by: James Agnew <jamesagnew@gmail.com> * #4468 fix previous link offset no cache pagination (#4489) * #4468 Add test reproducing the issue * #4468 Fix previous link for no cache offset pagination * #4468 Use unchecked URI parsing * Credit for #4489 --------- Co-authored-by: James Agnew <jamesagnew@gmail.com> * Changelog and data generating test * Add MdmLink index * Avoid double link deletion * Use ThreadLocal safely --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Zach Smith <85943952+zachdoctolib@users.noreply.github.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: Aleksej Parovysnik <100864000+alparodev@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Fix erroneous batch 2 $export 75% complete count when the job is COMPLETE (#4859) * Add failing unit test. * Add conditional logic to the InstanceProgress progress percentage to disregard the incomplete count if this is called from the reduction step. This is to get around a race condition in which a work chunk is QUEUED and not yet complete when the reduction step calculates the progress. * Add final. * Add changelog. * disable wars (#4877) Co-authored-by: Ken Stevens <ken@smilecdr.com> * 4868 fix paging hapi (#4870) * fixing some offset and adding a test * fixing the offset paging * Removing duplicate --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Aleksej Parovysnik <100864000+alparodev@users.noreply.github.com> * 4875-binary-access-write-doest-trigger-STORAGE-BINARY-ASSIGN-BLOB-ID-PREFIX-pointcut (#4876) * Add failing test * Add failing test * Fix and changelog * Pass content type parameter * Back to auto wiring the context * Invoke interceptor only when getting blobId, not also when storing it * Avoid breaking implementers * Address review comment * Add new exception Msg code * Fix broken test --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Fix batch job (bulk export) processed record count (#4879) * Remove racy stats recalc. * Throw 404 when requesting $export of non-existent Group or Patient (#4890) * Remove default implementation intended only for interim backwards compatibility (#4894) Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Rule apply patient export (#4893) * Test, fix, and changelog * Better partition resolution * Add checks based on rule applier * Fix ordering failure due to hash set * Allow empty auth interceptor * Fix up operation type on invocation * Add more tests, make hack implementation for patient instance level operation * Tighten test name * Changelog * Default method * remove dead method * Remove dead autowire --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * cve pom changes (#4898) Co-authored-by: Long Ma <long@smilecdr.com> * backport subscription topic bean cleanup (#4904) * 4891 bulk export do not recurse unasked for resources (#4895) * updating tests * fixing bulk export to not fetch resources not requested * cleanup * cleanup * more warning suppressing * adding error code * blah * fix test * review fixes --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * lowers log level to remove bootup noise (#4908) * CVE rel 6 6 (#4907) * cve pom changes * bump javax.el to jakarta.el --------- Co-authored-by: Long Ma <long@smilecdr.com> * Issue 4905 post binary failure invoking interceptor for pointcuts storage preshow resources (#4906) * Initial failing test * Avoid applying binary blob id prefix multiple times * Remove recently introduced method not needed anymore --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Enhance LogbackCaptureTestExtension (#4869) * repro bug with test, fix bug * ken informed me he resolved this bug on master, so i'm switching to use his solution * disable wars * review feedback * review feedback * review feedback again --------- Co-authored-by: josie <josie.vandewetering@smilecdr.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> * Resolve 4863 from release branch searchparametercanonicalizer does not account for search parameters for custom resources types when converting dstu23 into runtimesearchparam (#4887) * Modified canonicalizeSearchParameterDstu2 and 3, now correctly detect search parameters for custom resources * Canonicalizers now correctly handle search parameters for custom resources * created changelog * Modification based on comments: - remove Resource from target field when there are custom resource types - fixed changelog typo - removed unnecessary variable providesMembershipInCompartments * Added tests for the SearchParameterCanonicalizer to test if base and target of RuntimeSearchParam is set as expected for DSTU2, DSTU3, R4, R4B, and R5 resources * Fixed typo and removed commented code * re-ordered init methods * Update changelog Co-authored-by: Tadgh <garygrantgraham@gmail.com> * modifications following first code review. --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * License * Remove _lastUpdated filtering of _revincludes. (#4899) Remove _lastUpdated filtering of _revincludes. * 4910-dm-migration-error-for-oracle-19c (#4916) * Remove all_constraints references which break in oracle 19c * Add changelog --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * 4873 empty fhirid causes missing resource (#4874) * add check for empty fhirid string and add test * add test for populateid * changelog * version bump * version bump * reverse version bump * Back to 6.5.21-SNAPSHOT. --------- Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> * Fix include canonical url performance (#4919) Use hash_identity for canonical join * License * Version bump * Temp disable * Make this dependency provided * Updating version to: 6.6.1 post release. * Bump snakeyaml * Bump jackson to be compatible with new snakeyaml * Bump deps (#4926) * resolve CVEs, add new notes * Updating version to: 6.6.2 post release. * #5023 Unexpected usage of awssdk StringUtils in hapi 6.6 jpa migration (#5024) task Replace usage of awssdk * added docs * mssql test fixes * Updating version to: 6.6.3 post release. * fix up random errors when merging back * undisable test * remove mention of 6.6.3 which does not exist --------- Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: Brenin Rhodes <brenin@alphora.com> Co-authored-by: Jonathan Percival <jonathan.i.percival@gmail.com> Co-authored-by: chalmarm <44471040+chalmarm@users.noreply.github.com> Co-authored-by: Chalma Maadaadi <chalma@alphora.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Sam Gunter <123124187+samguntersmilecdr@users.noreply.github.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: StevenXLi <stevenli_8118@hotmail.com> Co-authored-by: Steven Li <steven@smilecdr.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: Zach Smith <85943952+zachdoctolib@users.noreply.github.com> Co-authored-by: Aleksej Parovysnik <100864000+alparodev@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Josie <80289977+pepsiofficial@users.noreply.github.com> Co-authored-by: josie <josie.vandewetering@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: markiantorno <markiantorno@gmail.com> Co-authored-by: Thomas Papke <web@thopap.de> 15 September 2023, 20:36:48 UTC
f94295d volodymyr-korzh 15 September 2023, 20:14:18 UTC Transaction with conditional delete and update on the same resource should not fail (#5318) * Transaction with conditional delete and update on the same resource should not fail - test * Transaction with conditional delete and update on the same resource should not fail - implementation * Transaction with conditional delete and update on the same resource should not fail - added changelog * Transaction with conditional delete and update on the same resource should not fail - fixes 15 September 2023, 20:14:18 UTC
8b7c9f1 StevenXLi 14 September 2023, 15:54:55 UTC 5307 search for medicationrequests with medication contained does not return correct results (#5308) * added failing test * implemented solution * added changelog * code review changes --------- Co-authored-by: Steven Li <steven@smilecdr.com> 14 September 2023, 15:54:55 UTC
de341a5 James Agnew 14 September 2023, 12:42:24 UTC Don't preserve history mode (#5306) * No history mode * Spotless * Version history * Fix changelog * Address review comment 14 September 2023, 12:42:24 UTC
d4a57fc Tadgh 14 September 2023, 12:06:18 UTC Fix version names (#5309) 14 September 2023, 12:06:18 UTC
e20382c michaelabuckley 14 September 2023, 00:27:37 UTC Fix for `userSelected` and `version`. (#5310) Fix `userSelected` and `version` in tags and security labels to DSTU2 and security labels in JPA storage. 14 September 2023, 00:27:37 UTC
0c42229 longma1 13 September 2023, 21:21:38 UTC Rel 6 8 2 mb (#5299) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * Removal of meta tags during updates do not trigger subscription (#5181) * Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Issue 5173 get gateway everything doesnt return all patients (#5174) * Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Fix link * Remove target slf4j version * dont use new API for a bit (#5191) * Return DropIdGeneratorTask from the Builder to permit clients to mutate the (#5193) DropIdGeneratorTask. * Dqm performance bug update and provider loader fix (#5180) * update tests, move properties, update operation loader * update wip * remove test * fixing tests, adding config * update config and provider loader * fix bundles * fix cache settings on tests * version bump and change log * version bump * fix formatting * CVE-2022-45868 * wip cve change * cve h2 add back in --------- Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> * bulkExportReuse with POST and GET (#5161) * string manipulation * Code to ensure bulkExportReuse works with POST and GET requests * Added formatting changes * Fixed tests that were not working * Formatting * Code clean up * fixing test failures * fixing test failures * Removed arrOfParams to now utilize ObjectMapper * Removing stack trace and adding an exception * Fixed test issue * formatting * formatting * Resolving code review comments * Reduce size of subscription max results (#5194) * Reduce MAX_SUBSCRIPTION_RESULTS to 10000 * Add changelog * 5037 goldenresource remains when target resource deleted (#5038) * draft test and fix * remove unused fields * remove unused fields * remove unused fields * draft test + solution for possible match case * combine sql statement + more error checking * add test case for possible duplicate * add config for autodeleting grs * refactoring, adding support for mongo, docs * refactoring + fixing mongo queries * add changelogs * fix both way link removal * clean up test comments * rename method * remove unnecessary bean * merge master/resolve conflicts * mvn spotless * address comment * changes to avoid version bumping * spotless * change error code --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * dont use new API for a bit (#5190) * licenses * Fixing terminology upload with large file. (#5204) * create initial test * adding fix; adding changelog; * fixing format. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * up version to 6.8.0 from snapshot * fix up some duplicate deps for skipping * Force deployment of other projects * make dummy java class to pass sonatype checks * make dummy java class to pass sonatype checks * Cheeky test removal * Another test removal * Updating version to: 6.8.1 post release. * adding back in tests for release pipelines * Fix bad version insert * Bump to core library version 6.0.22.2 (#5261) * Bump to core library version 6.0.22.2 * Bump HAPI to 6.8.1-SNAPSHOT, core library version to 6.0.22.2 * up version to 6.8.1 * Prevent remote deployment * Updating version to: 6.8.2 post release. * Re-add deploy plugin skip * re-add version * Bump core library version to 6.0.22.2 * Bump HAPI to 6.8.2-SNAPSHOT * Fix up version enum * Version bump * Updating version to: 6.8.3 post release. * mvn spotless:apply --------- Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: markiantorno <markiantorno@gmail.com> Co-authored-by: volodymyr <volodymyr.korzh@smilecdr.com> 13 September 2023, 21:21:38 UTC
7ecc0e6 James Agnew 13 September 2023, 21:08:00 UTC Fix timeout in large $everything operation (#5298) * Fixes * Changelog * Spotless * Compress data file * Remove fixme * Fix imports * Test fix * Compile fix * Apply spotless * Address review comments 13 September 2023, 21:08:00 UTC
564beb7 James Agnew 13 September 2023, 09:55:02 UTC Allow absolute links for refs with an identifier (#5295) * Allow absolute links for refs with an identifier * Add changelog * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_0_0/5295-fix-absolute-refs-with-identifier.yaml Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com> * Remove redundant class * Review comments --------- Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com> 13 September 2023, 09:55:02 UTC
f97eada TipzCM 13 September 2023, 03:03:24 UTC rebuild golden resource from survivorship on link edit (#5250) * adding rebuilding option for survivorship * rebuild survivorship resources * cleanup * configuring beans * fixing tests * cleanup * spotless * import fixing * cleaning up * fixing tests * fixing tests * version bump * undo change --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home> 13 September 2023, 03:03:24 UTC
2da8aaf James Agnew 13 September 2023, 00:35:17 UTC Add support for _lanugage SP (#5300) * Add support for _lanugage SP * Add changelog * Formatting fix * Add to JPA * Add validator * Validate language SP * Assign new code * Fixes 13 September 2023, 00:35:17 UTC
d4717a0 James Agnew 12 September 2023, 20:40:48 UTC Improve docs for NO-OP update pointcuts (#5294) 12 September 2023, 20:40:48 UTC
fe8c6c0 volodymyr-korzh 12 September 2023, 17:39:53 UTC SearchBuilder should not allow $everything operation to follow links to Group or List resources (#5283) * SearchBuilder should not allow $everything operation to follow links to Group or List resources - tests * SearchBuilder should not allow $everything operation to follow links to Group or List resources - implementation * SearchBuilder should not allow $everything operation to follow links to Group or List resources - spotless check fix and changelog added * Add a new permission: FHIR_OP_PATIENT_EVERYTHING_ACCESS_ALL for $everything operation - fixes Co-authored-by: James Agnew <jamesagnew@gmail.com> * MongoIncludeSvc should not allow $everything operation to follow links to Group or List resources - fixes * MongoIncludeSvc should not allow $everything operation to follow links to Group or List resources - fixes --------- Co-authored-by: James Agnew <jamesagnew@gmail.com> 12 September 2023, 17:39:53 UTC
03ebaba James Agnew 12 September 2023, 15:41:33 UTC Several IPS fixes (#5297) * Several IPS fixes * One more fix * Fix * Fixes * med fixes * Null safety 12 September 2023, 15:41:33 UTC
da58e9f VK-SMILECDR 11 September 2023, 16:05:50 UTC Add dao registry to cds config service (#5292) * add daoRegistry to CdsConfigService * add daoRegistry to CdsConfigService 11 September 2023, 16:05:50 UTC
5a88b50 James Agnew 09 September 2023, 13:42:29 UTC Upgrade Thymeleaf (#5239) * Upgrade Thymeleaf * Apply spotless * Version bump * Test fix 09 September 2023, 13:42:29 UTC
b8fcba0 Kevin Dougan SmileCDR 08 September 2023, 14:25:35 UTC Added changelog for 2023. (#5281) 08 September 2023, 14:25:35 UTC
57f6a70 Tadgh 07 September 2023, 22:51:12 UTC Fix NPE in MDM post-mdm-clear on UPDATE operations. (#3851) * Fix bug, imlpementation, changelog * wip * wip * wip * Add test * wip * wip 07 September 2023, 22:51:12 UTC
a676506 James Agnew 07 September 2023, 12:52:38 UTC Improve terminology validation error messages (#5271) * Improve terminology validation error messages * Changelog * Validation issues * Test fixes * Cleanup * Review comments * Fix 07 September 2023, 12:52:38 UTC
3e46f71 StevenXLi 06 September 2023, 20:34:37 UTC 5276 the graphql request results in an http 400 error (#5278) * fixed issue, added test * added change logs --------- Co-authored-by: Steven Li <steven@smilecdr.com> 06 September 2023, 20:34:37 UTC
650fbe5 Kevin Dougan SmileCDR 06 September 2023, 20:34:20 UTC Fixed HFQL Section name. (#5279) 06 September 2023, 20:34:20 UTC
d563b97 jdar8 06 September 2023, 15:43:14 UTC 5242 mdm clear doesn't expunge redirected golden resource (#5245) * fix + test * changelog * spotless --------- Co-authored-by: justindar <justin.dar@smilecdr.com> 06 September 2023, 15:43:14 UTC
862c048 Emre Dincturk 01 September 2023, 18:12:26 UTC 5259 sorted tags, security labels and profiles (#5260) * 5259 sorted tags, security labels and profiles * fixed typos and augmented a test case for sorter 01 September 2023, 18:12:26 UTC
33be707 TynerGjs 01 September 2023, 17:22:43 UTC Added RequestDetails as part of the parameters to cleaning up possible matches to enable interceptors to MdmStorageInterceptor.cleanUpPossibleMatches (#5257) access it 01 September 2023, 17:22:43 UTC
5f5b3db Tadgh 31 August 2023, 18:58:28 UTC Fix, test changelog (#5266) 31 August 2023, 18:58:28 UTC
cc283b7 Nathan Doef 31 August 2023, 18:08:45 UTC Respect response status code set in MethodOutcome of a Resource provider (#5267) * failing test * fix * extract response code modifying resource provider for testing * comment * remove TestResponseCodeModifyingPatientProvider 31 August 2023, 18:08:45 UTC
590e6ba Ken Stevens 31 August 2023, 17:23:00 UTC use ClasspathUtil (#5263) 31 August 2023, 17:23:00 UTC
f38df4b jdar8 30 August 2023, 23:10:54 UTC doc change (#5248) Co-authored-by: justindar <justin.dar@smilecdr.com> 30 August 2023, 23:10:54 UTC
cd0f6d1 StevenXLi 30 August 2023, 19:58:47 UTC 5246 bulk export merge steps (#5247) * added failing test * added the new step, replace existing steps * added changelog * fixed check style * changed the error code * added back the bean definition for ExpandResourcesStep, to keep test from erroring * code review fix * fixed placement * mirrored the implementation in the test * added null check * code review change * style fix * missed reverts --------- Co-authored-by: Steven Li <steven@smilecdr.com> 30 August 2023, 19:58:47 UTC
293f02a LalithE 29 August 2023, 23:16:01 UTC Fix to Bulk Export Enabled Disrupts Custom Resource Addition (#5255) * Required change to fix bug editing test case currently * Solution and unit test * Adding changelogs * adding coverage for registerCustomTypes * Fixing test cases, using same context for two tests messed it up 29 August 2023, 23:16:01 UTC
fb3e141 Etienne Poirier 28 August 2023, 16:47:53 UTC Messages submitted to the subscription pipeline are lost when submission fails. (#4733) * One more fix for #4467 * Enabling massIngestionMode causes incomplete resource deletion (#4476) * Adding initial test. * Adding fix and subsequent test. * Adding changelog. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Provide the capability to request that the name of the subscription matching channel be unqualified (#4464) * Adding initial test. * Adding initial solution implementation. * Adding change log and code clean up. * addressing comments from 1st code review. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Change visibility of migration method (#4471) * change migration visibility * add empty migration method for 640 --------- Co-authored-by: nathaniel.doef <nathaniel.doef@smilecdr.com> * Fix subscription validation not to validate partition ID when invoked from an update pointcut (#4484) * First commit: Make SubscriptionValidatingInterceptor aware of which Pointcut is being called. In validatePermissions(), skip determinePartition() if the Pointcut is STORAGE_PRESTORAGE_RESOURCE_UPDATED. Fix resulting compile errors in various unit tests. * Fix/enhance unit tests. Mark methods as deprecated instead of deleting them. Add proper error code. Complete changelog. * Remove erroneous TODOs and tweak the validation logic. * Enhance unit tests and fix changelog. * Reindex batch job fails when processing deleted resources. (#4482) * adding changelog. * Providing solution and adding changelog. * Adding new test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * cleaning up checkstyle files (#4470) * cleaning up checkstyle files * One more fix for #4467 (#4469) * added exlusions for files at base project level so checkstyle doesn't error out * duplicate error code from merge * changing lifecycle goal for all module checkstyle check * moving checkstyle to base pom file, changing exectution phase on base check, cleaning dependency, resolving duplicate error code * wip * trying to figure out why pipeline cannot copy files * removing modules that don't actually need to be built. * I messed up the version --------- Co-authored-by: James Agnew <jamesagnew@gmail.com> * Bump core to 5.6.881 (#4496) * Bump core to 5.6.881-SNAPSHOT * Work on fixing tests * Work on fixing tests 2 * Bump to core release --------- Co-authored-by: dotasek <david.otasek@smilecdr.com> * Issue 4486 mdm inconsistent possible match score values (#4487) * Extract method for readability * Save always normalized score values in POSSIBLE_MATCH links. * Avoid setting properties to null values. Adjust test. * Simplify fix * Fix test. Add RangeTestHelper. --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Revert "cleaning up checkstyle files (#4470)" This reverts commit efae3b5d5f397ab8fd92d7aaa82b484cfdfb3c33. * core version fix * Loosen rules for id helper * initial test implementation/changes and solution wiring. * adding support for jpa/mongo abstraction. * refact completed. need to start implementing scheduling of subscription re-submission with the scheduler service. * post release, merging in master. * wip: commit before merging in branch master. * wip: resuming work on the issue. * wip: before merging in master. * wip: partial implementation of mongo support. * wip: more work to support partial implementation on mongo. * Test implementation * providing method getMessageKeyOrDefault(); * providing changelog * preping codereview. * wip: passing tests * wip: finally solving the Meta issue. * wip: adjusting interfaces * Adding IT and * IT test; fixing rollback issue. * removing non required logging * fixing merge conflict * Preparing for code review. * Preparing for code review. * Compiling code after merging in master. * Fixing checkstyle failure. * Modifications towards getting all tests to pass. * addressing comments from code review. * compiling code after switching target merge branch to rel_pub_2023_05 * compiling code after switching target merge branch to rel_6_6 * Addressing comments made in design meeting. wip. * Addressing comments made in design meeting. finally completed. and last 2 comments addressed. * removing non required override * reverting changes as they are not required. * Modified test and implementation. * implementation of a SynchronousSubscriptionMatcherInterceptor to submit modifiedResources to the subscription pipeline for testing only. * fix tests by modifying the matchingInterceptor to call pointcut when processing * fixing more tests. * WIP to pass all tests in jpaserer-4504-a-resource-submitted-to-the-subscription-pipeline-is-lost-when-the-pipeline-encounters-an-issue * fixing circular dependency * Adding import dependency to class TestSubscriptionSubmitterConfig to allow submission of messages with the SynchronousSubscriptionMatcherInterceptor. * bumping version 6.7.7-SNAPSHOT * bumping HAPI version to 6.7.7-SNAPSHOT * fixing tests failure caused by asynch deliver of resourceModifiedMsg to the processing pipeline. * passing all tests. * unbumping to 6.7.7 * compiling after merging in master. * creating a custom hapi version * providing an synchronous subscription matcher interceptor for testing. * updating pom version to generate artifacts. * fixing tests, WIP/0 * fixing tests, WIP/1 * fixing tests, WIP/2 * Matching entity annotation with migration task declarations. * Moving AsynchResourceModified Scheduler and Submitter to hapi-fhir-storage. * Moving AsynchResourceModified Scheduler and Submitter to hapi-fhir-storage. * Reverting move of AsyncResourceModified[ProcessingSchedulerSvc|SubmitterSvc]. * Reverting move of AsyncResourceModified[ProcessingSchedulerSvc|SubmitterSvc] again. * Removing creation of new transaction to inflate PersistedRresourceModifiedMessages since it is already executing in a transaction. * bumping to version 6.7.14-ASYNC-SNAPSHOT for pipeline. * bumping hapi version to 6.7.14-ASYNC-SNAPSHOT for pipeline. * Formatter changes. * add generic * add generic * Addressing code review comments. * Adding file asynch_subscription_610.md to docs/upgrades * changing poms to 6.9.2-SNAPSHOT before merging in master. * compiling after merging in master. * Lowering logging level to debug. * Bumping to 6.9.3-SNAPSHOT * Bumping hapi version to 6.9.4-SNAPSHOT * Adding update documentation. * Modifying update file following review. --------- Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: nathaniel.doef <nathaniel.doef@smilecdr.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Mark Iantorno <markiantorno@gmail.com> Co-authored-by: dotasek <dotasek.dev@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> 28 August 2023, 16:47:53 UTC
6a7340a jdar8 25 August 2023, 19:59:44 UTC 5231 MDM Link History gives 404 after MDM clear and submit (#5232) * fix + tests * remove comments * docs + changelog * spotless * edit changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> 25 August 2023, 19:59:44 UTC
db6d809 TynerGjs 25 August 2023, 18:49:06 UTC modified MdmLinkDaoJpaImpl.convertToLongIds so that it returns all pi… (#5244) * modified MdmLinkDaoJpaImpl.convertToLongIds so that it returns all pid that is related to a forced id. added tests for above changes * joined helper methods * joined helper methods 25 August 2023, 18:49:06 UTC
9ded67f Tadgh 24 August 2023, 19:12:53 UTC Modify editorconfig to match spotless rules (#5241) * Modify editorconfig to match spotless rules * Fix prop * remove redundant charsets 24 August 2023, 19:12:53 UTC
318b68e TipzCM 24 August 2023, 16:36:31 UTC 5192 include in search empty page results (#5211) Fixing paging with _include query parameter 24 August 2023, 16:36:31 UTC
8d39e34 Emre Dincturk 24 August 2023, 14:41:01 UTC cast errorcount to string for batchjob failure message (#5230) (#5233) Co-authored-by: Emre Dincturk <emre.dincturk@smilecdr.com> 24 August 2023, 14:41:01 UTC
ed616f7 SouradeepSahaSmile 23 August 2023, 14:27:02 UTC Automated migration test data (#5218) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * wip run 5.2.0 migrations and then add test data * Fix h2 * Fix postgres * Complete until v5.4 * add sql migration scripts: * Temp * Add v6_0_0 * Add v6_8_0 * Final changes * clean up * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * Complete Oracle * Remove V6_8_0 * apply mvn: spotless * Removal of meta tags during updates do not trigger subscription (#5181) * Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Issue 5173 get gateway everything doesnt return all patients (#5174) * Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Update CDR insert tables * Update CDR insert tables --------- Co-authored-by: tadgh <garygrantgraham@gmail.com> Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: nathaniel.doef <nathaniel.doef@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> 23 August 2023, 14:27:02 UTC
bbcc614 Justin McKelvy 22 August 2023, 22:05:05 UTC 5222 storage cr hapifhirretrieveprovider terminology paging bug (#5224) * update query iterable to page results, update config for batching * add test for large valueset issue --------- Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> 22 August 2023, 22:05:05 UTC
943a052 Ken Stevens 22 August 2023, 13:59:11 UTC combosp intermittent (#5225) * fix intermittent * spotless 22 August 2023, 13:59:11 UTC
deeffe2 Ken Stevens 21 August 2023, 17:27:44 UTC fix some race conditions (#5220) * fix memory leak * race condition fixes and change log * race condition fixes and change log 21 August 2023, 17:27:44 UTC
b915572 Ken Stevens 20 August 2023, 00:37:16 UTC fix batch2 npe when no results returned (#5219) * fix npe error * spotless * spotless 20 August 2023, 00:37:16 UTC
ab2a86b Ken Stevens 18 August 2023, 22:08:54 UTC partition cache (#5217) * Convert PartitionLookupSvcImpl to use MemoryCacheService * Convert PartitionLookupSvcImpl to use MemoryCacheService * add test * add test * add test * fix tests 18 August 2023, 22:08:54 UTC
1e45506 James Agnew 18 August 2023, 16:30:00 UTC Improve ID filtering (#5215) * Improve ID filtering * Formatting * Add license header * Address review comments 18 August 2023, 16:30:00 UTC
3512f82 VK-SMILECDR 17 August 2023, 18:01:50 UTC fix the issue (#5214) 17 August 2023, 18:01:50 UTC
fdfda37 TipzCM 17 August 2023, 15:42:06 UTC 5198 fixing searching everything op (#5201) * fixing searches * fixing paging in master * cleanup * Fixing the tests * fixing tests * fixing test * cleanup * fixing * removing unneeded class * adding a changelog and cleaning some final details * code styles * cleaning up imports * review notes * formatting --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> 17 August 2023, 15:42:06 UTC
a10856e Tadgh 15 August 2023, 19:32:10 UTC GM1 Mergeback (#5203) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * Rename file to force IT mode * _source search parameter needs to support modifiers (#5095) _source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers * Fix HFQL docs (#5151) * Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156) * Initial failing test. * Solution with changelog. * fixing format. * Addressing comment from code review. * fixing failing test. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * documentation update (#5154) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * Fix hsql jdbc driver deps (#5168) Avoid non-included classes in jdbc driver dependencies. * $delete-expunge over 10k resources will now delete all resources (#5144) * First commit with very rough fix and unit test. * Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest. * Spotless * Fix checkstyle errors. * Fix test failures. * Minor refactoring. New unit test. Finalize changelist. * Spotless fix. * Delete now useless code from unit test. * Delete more useless code. * Test pre-commit hook * More spotless fixes. * Address most code review feedback. * Remove use of pageSize parameter and see if this breaks the pipeline. * Remove use of pageSize parameter and see if this breaks the pipeline. * Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases. * Deprecate the old method and have it call the new one by default. * updating documentation (#5170) Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> * _source search parameter modifiers for Subscription matching (#5159) * _source search parameter modifiers for Subscription matching - test, implementation and changelog * Removal of meta tags during updates do not trigger subscription (#5181) * Initial failing test. * adding solution; fixing documentation; * spotless apply * adding changelog * modifying current test --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Issue 5173 get gateway everything doesnt return all patients (#5174) * Failing test * Also set offset and count in base DAO override * Changelog * Fix for specific case where count has been set in parameters * spotless * Improve checks --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (#5175) * First commit with failing unit test and small tweaks. * Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing. * Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl. * Revert PackageResourceParsingSvc to release branch baseline. * Accept code reviewer suggestion to change changelog description. Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Fix link * Remove target slf4j version * dont use new API for a bit (#5191) * Return DropIdGeneratorTask from the Builder to permit clients to mutate the (#5193) DropIdGeneratorTask. * Dqm performance bug update and provider loader fix (#5180) * update tests, move properties, update operation loader * update wip * remove test * fixing tests, adding config * update config and provider loader * fix bundles * fix cache settings on tests * version bump and change log * version bump * fix formatting * CVE-2022-45868 * wip cve change * cve h2 add back in --------- Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> * bulkExportReuse with POST and GET (#5161) * string manipulation * Code to ensure bulkExportReuse works with POST and GET requests * Added formatting changes * Fixed tests that were not working * Formatting * Code clean up * fixing test failures * fixing test failures * Removed arrOfParams to now utilize ObjectMapper * Removing stack trace and adding an exception * Fixed test issue * formatting * formatting * Resolving code review comments * Reduce size of subscription max results (#5194) * Reduce MAX_SUBSCRIPTION_RESULTS to 10000 * Add changelog * 5037 goldenresource remains when target resource deleted (#5038) * draft test and fix * remove unused fields * remove unused fields * remove unused fields * draft test + solution for possible match case * combine sql statement + more error checking * add test case for possible duplicate * add config for autodeleting grs * refactoring, adding support for mongo, docs * refactoring + fixing mongo queries * add changelogs * fix both way link removal * clean up test comments * rename method * remove unnecessary bean * merge master/resolve conflicts * mvn spotless * address comment * changes to avoid version bumping * spotless * change error code --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * dont use new API for a bit (#5190) * licenses * wip * Fix API usage * wip * Version bump --------- Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: TipzCM <leif.stawnyczy@gmail.com> Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com> Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com> 15 August 2023, 19:32:10 UTC
f2087d2 TynerGjs 14 August 2023, 14:04:07 UTC added validateExpungeEnabled() call to type-level expunge, moved two … (#5197) * added validateExpungeEnabled() call to type-level expunge, moved two overloading method so that they are next to each other * added test for expunge enabled expunge for testExpungeAllVersionsWithTagsDeletesRow in FhirResourceDaoR4QueryCountTest * added changelog * optimized tests and changelogs 14 August 2023, 14:04:07 UTC
de9a747 jdar8 04 August 2023, 20:24:01 UTC MDM operation to return total number of Possible Duplicates (#5130) * addition, test, changelog * update changelog * address review comment + add test for coverage * remove unnecessary space + changes * mvn spotless --------- Co-authored-by: justindar <justin.dar@smilecdr.com> 04 August 2023, 20:24:01 UTC
a48c602 TipzCM 02 August 2023, 20:38:33 UTC adding pointcuts for mdm operations (#5116) * adding pointcuts for mdm operations * adding changelog * cleanup * cleaning up * formatting * review fixes * formatting * more cleanup * cleanup * moving changelog * fixing a bug * cleanup * formatting * version bump * fixing broken merge * fixing the version --------- Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> 02 August 2023, 20:38:33 UTC
fd5c2c2 TipzCM 02 August 2023, 16:29:17 UTC all updated resources to link to existing resources (#5152) updating mdm resources will update all links to them as well as any links that it would match after update 02 August 2023, 16:29:17 UTC
5eda18f Tadgh 30 July 2023, 22:28:26 UTC Mergeback of rel_6_8 (#5146) * version bump * Bump to core release 6.0.22 (#5028) * Bump to core release 6.0.16 * Bump to core version 6.0.20 * Fix errors thrown as a result of VersionSpecificWorkerContextWrapper * Bump to core 6.0.22 * Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127) * dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID * added changelog * changed to valid version number * changed to valid version number, need to be ordered by version number... * 5123 - Use DEFAULT partition for server-based requests if none specified (#5124) 5123 - Use DEFAULT partition for server-based requests if none specified * consent remove all suppresses next link in bundle (#5119) * added FIXME with source of issue * added FIXME with root cause * added FIXME with root cause * Providing solution to the issue and removing fixmes. * Providing changelog * auto-formatting. * Adding new test. * Adding a new test for standard paging * let's try this and see if it works...? * fix tests * cleanup to trigger a new run * fixing tests --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> * 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118) * fix, test, changelog * fix, test, changelog --------- Co-authored-by: justindar <justin.dar@smilecdr.com> * Rename file to force IT mode --------- Co-authored-by: dotasek <david.otasek@smilecdr.com> Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com> Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: justindar <justin.dar@smilecdr.com> 30 July 2023, 22:28:26 UTC
2b91f0a James Agnew 28 July 2023, 13:46:01 UTC Version bump HAPI FHIR and a couple of deps (#5121) * Version bumps * Version bump HAPI * Add enum for next release * Changelog update * HAPI version bump 28 July 2023, 13:46:01 UTC
b376778 Ken Stevens 27 July 2023, 14:39:32 UTC change mdm interceptor loader to fail when message subscription types… (#5128) * change mdm interceptor loader to fail when message subscription types aren't enabled. * cleanup * cleanup * fix tests * cleanup * spotless * fix test * fix test * changelog --------- Co-authored-by: Ken Stevens <ken@smilecdr.com> 27 July 2023, 14:39:32 UTC
dcf3240 Tadgh 26 July 2023, 18:53:15 UTC Proper version bump (#5135) * Fix version * Fix version enum 26 July 2023, 18:53:15 UTC
dc3a411 Ken Stevens 26 July 2023, 18:37:23 UTC added test to confirm this works properly (#5134) Co-authored-by: Ken Stevens <ken@smilecdr.com> 26 July 2023, 18:37:23 UTC
85f41d5 dependabot[bot] 26 July 2023, 12:52:48 UTC Bump h2 from 2.1.214 to 2.2.220 (#5067) Bumps [h2](https://github.com/h2database/h2database) from 2.1.214 to 2.2.220. - [Release notes](https://github.com/h2database/h2database/releases) - [Commits](https://github.com/h2database/h2database/compare/version-2.1.214...version-2.2.220) --- updated-dependencies: - dependency-name: com.h2database:h2 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 26 July 2023, 12:52:48 UTC
e14bbec James Agnew 24 July 2023, 19:32:42 UTC IPS Connectathon Fixes (#4834) * IPS Connectathon Fixes * Fix changelog * Cleanup 24 July 2023, 19:32:42 UTC
53ceb7c Tadgh 24 July 2023, 15:49:40 UTC Bump to nov (#5120) * bump version, make new folders * Fix typo in versionenum 24 July 2023, 15:49:40 UTC
6d745b4 James Agnew 21 July 2023, 22:51:23 UTC Initial HFQL SQL Implementation (#5083) * FQL tests * Working so far * Tests working * Tests passing * Work on parser * Tests passing * Cleanup * Working * Work on parser * Work * Working * Work on tests * Work on driver * Work * Ongoing work * Rename SEARCH to WHERE * Work on fhirpath * Test fixes * Work on statements * Build fixes * Spotless application * Fix CI * Build fixes * Clean up changelogs * Remove redundant gitignore * Add docs * Add docs * Code cleanup * Build cleanup * Fix compile error * Test fixes * Test fix * Test fix * Work on integration * Work on design * Work on UI * Update hapi-fhir-jpaserver-hfql/src/main/java/ca/uhn/fhir/jpa/fql/jdbc/JdbcDriver.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * Address review comments * Review comments * HFQL work * Cleanup * CLeanup * License headers * Test fixes * HAPI version bump * License header update * Changelog cleanup * Fixes * Test fix * Fix spotless issues --------- Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> 21 July 2023, 22:51:23 UTC
f68f3fb TynerGjs 21 July 2023, 17:08:58 UTC Resolve 5112 unable to expunge deleted codesystem until several minutes later (#5113) * returned user-friendlier message, implemented unit tests, added changelog * reformatted file * added Msg.code to the exception thrown * added Msg.code in test * Changed to catch DataIntegrityViolationException only. 21 July 2023, 17:08:58 UTC
back to top