https://github.com/ctlab/phantasus

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Revision Author Date Message Commit Date
38ac198 Update README.md 10 March 2024, 22:55:01 UTC
e96a46a add unix to suggests (needed for opencpu) 08 March 2024, 18:13:37 UTC
51317fc missed XML dependency 08 March 2024, 18:09:08 UTC
261f353 version bump 06 March 2024, 21:29:21 UTC
a9eab9f fix support for local h5 files in docker 23 February 2024, 20:13:08 UTC
39d3c90 js: main page and minor fixes 23 February 2024, 18:55:04 UTC
e85bf92 Merge branch 'config' 22 February 2024, 21:50:37 UTC
220506c remove double trap triger 22 February 2024, 19:46:41 UTC
6c756ae faster download for annot db with compressed files 22 February 2024, 03:40:14 UTC
5fe41a7 updated version and NEWS 22 February 2024, 00:21:45 UTC
4c9faaf fix counts path setup and check 02 February 2024, 22:24:17 UTC
3771f5b change logo 02 February 2024, 20:28:16 UTC
a032ccf not changing config ownership 26 January 2024, 20:12:31 UTC
6995163 fix docker config and nginx cache path 26 January 2024, 16:16:08 UTC
7b67a20 fix chown of config 03 January 2024, 20:33:21 UTC
ede9cb2 Fix documentation warnings 15 November 2023, 17:14:01 UTC
2eca27a Merge remote-tracking branch 'upstream/master' 15 November 2023, 16:31:37 UTC
985c337 use BiocManager version of hdf5client and phantasusLite 08 November 2023, 19:50:30 UTC
b662f86 fix R version and bind preloaded 07 November 2023, 20:01:01 UTC
c191786 Get version with bugfixes 07 November 2023, 19:58:18 UTC
db478e6 JS fix: tmm and limma 07 November 2023, 19:11:29 UTC
ce645a8 save voom weights 07 November 2023, 19:08:35 UTC
5869a68 fix citation and add phantasusLite to deps 06 November 2023, 21:18:32 UTC
8e3f4d4 works with empty conuts folder 02 November 2023, 14:42:46 UTC
6ec69be add counts meta generation in setup 01 November 2023, 21:28:48 UTC
3eaf52a add compose and env files 30 October 2023, 16:54:45 UTC
a05bba3 fix validity check 27 October 2023, 14:49:01 UTC
8316163 main brranch of phantasusLite 27 October 2023, 13:33:20 UTC
0ef1c39 create docker conf 27 October 2023, 13:30:53 UTC
9be9aa5 add setup for docker 27 October 2023, 13:29:18 UTC
42fae58 bump x.y.z version to odd y following creation of RELEASE_3_18 branch 24 October 2023, 15:03:44 UTC
ccd60dd bump x.y.z version to even y prior to creation of RELEASE_3_18 branch 24 October 2023, 15:03:44 UTC
9155900 Merge remote-tracking branch 'origin/master' into config 23 October 2023, 19:27:52 UTC
62c3b9d get actual version 23 October 2023, 19:23:17 UTC
9757581 Fix manual pdf build 23 October 2023, 16:15:32 UTC
6d06d2c remove outdated badges 19 October 2023, 16:14:55 UTC
4f8848b remove bioccheck & codecov 19 October 2023, 16:13:10 UTC
73fa89e delete static release.js Merge-request: PHANTASUS-MR-37 Merged-by: Alexey Sergushichev <alserg@itmo.ru> 18 October 2023, 21:55:09 UTC
d999a1e some fixes 18 October 2023, 19:22:03 UTC
35546c2 fix docker 16 October 2023, 18:24:59 UTC
ee13f22 try new docker 10 October 2023, 20:36:03 UTC
156c0c8 add / to counts paths 09 October 2023, 16:48:23 UTC
b0bef47 paste0 04 October 2023, 18:35:34 UTC
5af5519 remove phantasusLite from suggestions 03 October 2023, 18:36:05 UTC
1baa711 add hsds, change default path 03 October 2023, 18:30:15 UTC
7ac14ad use correct mirror fro js 21 September 2023, 17:47:31 UTC
6941fe5 try to set global vars 21 September 2023, 17:40:46 UTC
92fd4ec -r cp oprion in tests 21 September 2023, 17:27:32 UTC
490a788 syntax fix 21 September 2023, 17:11:03 UTC
6f35b21 add conf for js tests 21 September 2023, 17:01:20 UTC
4c95951 fix annotdb test 20 September 2023, 21:06:33 UTC
358c234 change conf path 20 September 2023, 20:46:17 UTC
990786e use another conf for tests 20 September 2023, 20:09:40 UTC
23a46a2 fix counts test 20 September 2023, 19:33:44 UTC
da3d853 fix another gct test 20 September 2023, 19:20:23 UTC
b87474e fix wrong order of cells after TMM and voom 20 September 2023, 19:20:22 UTC
848c839 try create dir before writing 20 September 2023, 18:56:03 UTC
de664d8 "donotrun" loadgeo methods 18 September 2023, 20:56:13 UTC
d1c4bb8 add second test conf 18 September 2023, 20:40:15 UTC
61d8cde change docs 18 September 2023, 19:44:01 UTC
1d42c3b try to fix tests 18 September 2023, 19:20:38 UTC
87a2ff1 add user config 07 September 2023, 19:44:30 UTC
e44ad01 working setup 05 September 2023, 20:32:34 UTC
b5e2b59 annotdb setup working 05 September 2023, 17:59:51 UTC
3e0a250 fix dataset problem in JS 05 September 2023, 17:35:54 UTC
abd6053 something not finished 05 September 2023, 16:02:42 UTC
882d3b8 bump version to 1.21.4 29 August 2023, 20:12:32 UTC
4bff9c7 update js - fix gct parsing 16 August 2023, 20:20:42 UTC
efb5f4e config first version 16 August 2023, 19:07:32 UTC
f87ef2d Merge PHANTASUS-MR-35: new_normalizations 02 August 2023, 03:57:04 UTC
b6dac95 fix limma tests 02 August 2023, 00:57:28 UTC
b3a8e0a fixup! more version fixes 01 August 2023, 22:09:34 UTC
3b86c80 Merge branch 'master' into new_normalizations 01 August 2023, 21:54:51 UTC
385c1aa fixup! versions corrected 01 August 2023, 21:53:55 UTC
106984a NEWS update 01 August 2023, 21:50:56 UTC
407fb2e JS update 01 August 2023, 21:50:45 UTC
18b4fc4 remove test print 01 August 2023, 15:33:41 UTC
496fb3d works with strange factor names and levels 31 July 2023, 21:15:54 UTC
b8cbb40 document_update 28 July 2023, 18:50:33 UTC
db5fb84 add packages 28 July 2023, 18:24:51 UTC
b60858a optional filter and cpm for voom and tmm 26 July 2023, 16:13:57 UTC
11478e1 bugfixes in hdf5 reading and meta generation 25 July 2023, 19:05:14 UTC
7f2eedc add advanced design to limma 07 July 2023, 20:48:32 UTC
b7efd45 archs4_v2.2 support, changed meta.txt format Co-authored-by: Maksim Kleverov <klevermx@gmail.com> Merge-request: PHANTASUS-MR-32 Merged-by: Alexey Sergushichev <alserg@itmo.ru> 22 June 2023, 19:15:40 UTC
c9eeb0f add voom and deseq with design 17 May 2023, 18:10:13 UTC
f0f0575 Merge remote-tracking branch 'space/master' 26 April 2023, 15:59:19 UTC
cfcacbe version fix 26 April 2023, 15:57:20 UTC
5524cc3 bump x.y.z version to odd y following creation of RELEASE_3_17 branch 25 April 2023, 15:00:13 UTC
d248b1e bump x.y.z version to even y prior to creation of RELEASE_3_17 branch 25 April 2023, 15:00:13 UTC
e90ae31 fix brief loading 19 April 2023, 07:16:58 UTC
6409ba3 voom normalization first version 19 April 2023, 06:58:33 UTC
bbadc3c add tmm normalization 13 March 2023, 19:05:53 UTC
489aa7a citation 21 December 2022, 22:25:09 UTC
451ce06 ShinyGAM -> ShinyGATOM 13 December 2022, 12:21:04 UTC
a344bd0 version fix 03 November 2022, 18:51:22 UTC
ad8fdc4 increased nginx buffer sizes 01 November 2022, 20:38:36 UTC
8ba08db bump x.y.z version to odd y following creation of RELEASE_3_16 branch 01 November 2022, 15:17:23 UTC
bd60368 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch 01 November 2022, 15:17:23 UTC
7b78680 js update + version bump 27 October 2022, 01:03:03 UTC
2f82e1f keep all annotations if no genes detected, fix #155 27 October 2022, 00:53:41 UTC
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