Revision history - refs/environments/code-coverage-475-rv2oyk/deployments/3732 - origin: https://gitlab.opengeosys.org/ogs/ogs.git

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Revision	Author	Date	Message	Commit Date
d40ef56	Karsten Rink	11 October 2023, 14:52:38 UTC	Merge branch 'RemoveMeshElementsInvertBoundingBox' into 'master' [utils] Invert bounding box for RemoveMeshElements Closes #3414 See merge request ogs/ogs!4759	11 October 2023, 14:52:38 UTC
557d328	rinkk	11 October 2023, 08:54:00 UTC	clang format and const-ing params	11 October 2023, 14:52:05 UTC
abb8a73	Lars Bilke	11 October 2023, 12:49:59 UTC	Merge branch 'BHE_Meshing_Doc' into 'master' [Web] Tutorial of creating mesh with BHEs and enhanced notebook to web conversion See merge request ogs/ogs!4704	11 October 2023, 12:49:59 UTC
71343c1	Lars Bilke	11 October 2023, 07:58:17 UTC	[web] Updated docs on notebook usage.	11 October 2023, 12:47:00 UTC
9260b46	Lars Bilke	11 October 2023, 07:32:03 UTC	[T] Convert to toml frontmatter.	11 October 2023, 09:04:19 UTC
73c6a32	Lars Bilke	11 October 2023, 07:31:43 UTC	[T,nb] Enforce toml frontmatter on notebooks, add checks.	11 October 2023, 09:04:18 UTC
7f738fb	Lars Bilke	11 October 2023, 07:26:42 UTC	[T] DiscWithHole nb: fix TUBAF logo.	11 October 2023, 09:04:18 UTC
d1bd958	Lars Bilke	10 October 2023, 15:25:55 UTC	[vale] Finally fixing the notebook, vale reports wrong line numbers! When using curly braces in code block, e.g. ```python gmsh.write(f"{out_dir}/{bhe_mesh_file_name}.msh") ``` It reports the above line instead of the actual error line... :-(	10 October 2023, 15:25:55 UTC
571f628	Lars Bilke	10 October 2023, 12:11:47 UTC	[T,web] ipynb notebooks to web conversion in build dir. Was done in source dir. Now is in line with jupytext notebooks.	10 October 2023, 12:12:49 UTC
8c6c1f0	Lars Bilke	10 October 2023, 11:41:10 UTC	[T] Renamed notebook for better url.	10 October 2023, 12:12:49 UTC
fb1cb18	Lars Bilke	10 October 2023, 11:39:52 UTC	[T] Output ctest command (helpful for reproducing).	10 October 2023, 12:12:48 UTC
e67432b	Lars Bilke	10 October 2023, 11:36:56 UTC	[T] Fixed testrunner jupytext variable.	10 October 2023, 12:12:48 UTC
58b206e	Lars Bilke	10 October 2023, 08:22:44 UTC	[ci] Update pre-commit and install go (vale) in pre-commit image.	10 October 2023, 11:46:09 UTC
fd49c5f	Lars Bilke	10 October 2023, 08:11:29 UTC	[web] Adapt bhe meshing tutorial download link.	10 October 2023, 11:46:09 UTC
0f7e783	Lars Bilke	10 October 2023, 08:01:40 UTC	[ci] Jupytext notebooks can be downloaded as ipynb from the website.	10 October 2023, 11:46:09 UTC
b819410	Lars Bilke	10 October 2023, 08:00:20 UTC	[ci] Run vale directly and use official pre-commit hook.	10 October 2023, 11:46:09 UTC
7230ed3	Lars Bilke	10 October 2023, 06:47:53 UTC	[T, web] Add BHE tutorial to ctest.	10 October 2023, 11:46:09 UTC
d664221	Lars Bilke	10 October 2023, 06:47:35 UTC	[T] Notebook testrunner for jupytext based web pages.	10 October 2023, 11:46:09 UTC
7cb7fa7	Lars Bilke	10 October 2023, 06:46:51 UTC	[cmake] Add PYTHON_PACKAGES argument to NotebookTest().	10 October 2023, 11:46:08 UTC
78dbff0	Lars Bilke	10 October 2023, 06:42:24 UTC	[web] Mount release preset build dir for converted notebooks.	10 October 2023, 11:46:08 UTC
a3be8c7	rinkk	10 October 2023, 10:32:14 UTC	adjusted Data Explorer dialogue to support inverted bounding boxes for mesh element removal	10 October 2023, 11:43:05 UTC
a43509d	rinkk	10 October 2023, 10:31:41 UTC	adjusted removeMeshElements-tool to support inverted bounding boxes	10 October 2023, 11:43:05 UTC
1fc5a62	rinkk	10 October 2023, 10:08:36 UTC	Added flag to invert bounding box when searching for mesh elements to remove	10 October 2023, 11:43:05 UTC
5690d5e	Lars Bilke	10 October 2023, 06:40:30 UTC	[web] Use mount config also for static files configuration.	10 October 2023, 09:11:32 UTC
4aa6755	Lars Bilke	10 October 2023, 06:39:44 UTC	[web] Exclude md files prefixed with `notebook-`.	10 October 2023, 09:11:32 UTC
94098fa	Lars Bilke	10 October 2023, 06:38:01 UTC	Notebooks on web page need to prefixed with `notebook-`.	10 October 2023, 09:11:32 UTC
079e664	Lars Bilke	09 October 2023, 13:08:59 UTC	Some vale fixes.	10 October 2023, 09:11:32 UTC
395d733	Lars Bilke	09 October 2023, 11:48:21 UTC	markdownlint.	10 October 2023, 09:11:31 UTC
0e17a22	Lars Bilke	09 October 2023, 11:46:11 UTC	[nb] Converted tutorial to markdown. pipx run jupytext --to md web/content/docs/tutorials/bhe_meshing/bhe_meshing.ipynb	10 October 2023, 09:11:31 UTC
59be4f5	Haibing Shao	03 October 2023, 13:34:11 UTC	Add tutorial of BHE meshing Add more explanation explanation and auto tag generation added fix spelling error Move files to new location minor changes add figure showing the mesh add meta data [docs] Renamed bhe meshing notebook and small syntax adaptions. fix doc according to reviewer's comments fix break line error break each sentence into separate lines add explanation of TagBS address reviewers' comments add explanation of version 2.2 additional explanation of (d-2) and vtu file conversion cell added new figures with explanation and separate text blocks added boreholes 1D png file added Upload New File minor changes Deleted previous excel file new excel file added deleted previous pictures new 3 pictures added new bhe_meshing file added deleted 2 previous pictures fix two spelling errors update to latest version correct file name and link move to tutorial folder add link to image fix the delimiter error add link to process description fix end of line error add 2 checks one more check add the conversion success message add another check on the mesh	10 October 2023, 09:11:31 UTC
3f1d32e	Lars Bilke	27 September 2023, 08:10:58 UTC	[pre-commit] Ignore ipynb files on codespell-check.	10 October 2023, 09:11:31 UTC
97dbae5	Dmitry Yu. Naumov	09 October 2023, 15:08:46 UTC	Merge branch 'reduce-linear-solver-includes' into 'master' Reduce "scope" of linear solver includes See merge request ogs/ogs!4754	09 October 2023, 15:08:46 UTC
4d7995d	Dmitry Yu. Naumov	09 October 2023, 14:50:43 UTC	Merge branch 'DE_VoxelFault' into 'master' AddFaultToVoxelGrid added to DataExplorer See merge request ogs/ogs!4693	09 October 2023, 14:50:43 UTC
a5fc96e	Dmitry Yu. Naumov	09 October 2023, 14:31:28 UTC	Merge branch 'FixHdfData' into 'master' Fix bug in XDMF interface: Add missing uchar data type Closes #3434 See merge request ogs/ogs!4755	09 October 2023, 14:31:28 UTC
4284b6e	Tobias Meisel	09 October 2023, 13:17:46 UTC	[MeL/IO/HDF] Save uchar as NATIVE_UCHAR	09 October 2023, 13:22:40 UTC
aa3ad52	Julian Heinze	09 October 2023, 08:23:55 UTC	refactor on_(de)selectDataButton_pressed() - also updated for TranslateDataDialog	09 October 2023, 13:15:56 UTC
7036941	Julian Heinze	05 October 2023, 11:12:55 UTC	extract getSelectedObjects()	09 October 2023, 13:15:56 UTC
2fb9389	Julian Heinze	20 July 2023, 09:16:48 UTC	AddFaultToVoxelGrid added to DataExplorer	09 October 2023, 13:15:48 UTC
e063682	Dmitry Yu. Naumov	09 October 2023, 09:15:23 UTC	Merge branch 'UpdatePETScSolverOutput' into 'master' PETSc: Amend used norm type of solver to output message See merge request ogs/ogs!4756	09 October 2023, 09:15:23 UTC
1b4b095	Christoph Lehmann	06 October 2023, 10:52:56 UTC	[PL] Removed unneeded include	09 October 2023, 08:17:38 UTC
6625d92	Christoph Lehmann	06 October 2023, 10:50:01 UTC	[PL] Removed unneeded include and type aliases	09 October 2023, 08:17:38 UTC
244965b	Christoph Lehmann	06 October 2023, 10:43:25 UTC	[PL] Removed unneeded include	09 October 2023, 08:17:38 UTC
a5abc6e	Christoph Lehmann	06 October 2023, 10:31:41 UTC	Added includes of global linear solver type header	09 October 2023, 08:17:38 UTC
2ca8d0f	Thomas Fischer	04 September 2023, 08:38:15 UTC	[MathLib] Output norm type of PETSc solver	09 October 2023, 06:35:57 UTC
5d4748d	Thomas Fischer	06 October 2023, 19:13:59 UTC	[MeL/IO/XDMF] Add missing uchar data type	06 October 2023, 19:13:59 UTC
0ae8563	Christoph Lehmann	06 October 2023, 10:14:26 UTC	[MaL] Moved linear solver type alias to separate file	06 October 2023, 10:14:26 UTC
b8e243a	Dmitry Yu. Naumov	06 October 2023, 09:04:14 UTC	Merge branch 'THM_FixPrevIceVolumeFraction' into 'master' [PL/THM] Explicitly set phi_fr_prev See merge request ogs/ogs!4744	06 October 2023, 09:04:14 UTC
69ca768	Dmitri Naumov	04 October 2023, 08:29:10 UTC	[T/THM] Heat transport in stationary flow w/ ice Presence of ice phase at slightly positive temperatures with shallow sigmoid function for ice phase should not affect the results much but only for amount of ice formed. In the simulation the initial ice volume fraction is 0.0379... . Displacement and stress are read from previous simulation's steady-state result. Incorrect update of phi_fr_prev causes pressure to drop significantly in the first step, which is unexpected, since everything is in equilibrium. Temperature load starts only after 10 steps at t=10000s.	05 October 2023, 13:14:07 UTC
277410a	Dmitri Naumov	26 September 2023, 09:59:20 UTC	[PL/THM] Explicitly set phi_fr_prev, don't update The phi_fr_prev variable initialization was not correct. Setting it explicitly avoids any non-initialized states.	04 October 2023, 16:43:36 UTC
d846de4	Tom Fischer	03 October 2023, 17:15:58 UTC	Merge branch 'FixConstructMeshesFromGeometryBulkElementIds' into 'master' Use bulk element's id for boundary element construction Closes #3430 See merge request ogs/ogs!4751	03 October 2023, 17:15:58 UTC
93f12dc	Dmitry Yu. Naumov	03 October 2023, 16:32:57 UTC	Merge branch 'FixPETScMeshComponenteMapBug' into 'master' Bug fix for DOF index calculation in parallel ogs version See merge request ogs/ogs!4738	03 October 2023, 16:32:57 UTC
b5dcba5	Dmitri Naumov	03 October 2023, 13:51:27 UTC	[T/TRM] Add boundary mesh output to vtkdiff checks	03 October 2023, 13:51:27 UTC
21ce236	Thomas Fischer	19 September 2023, 12:18:23 UTC	[PL/Assembly] Negative row indices are handled later on	03 October 2023, 12:11:37 UTC
875817d	Thomas Fischer	19 September 2023, 10:37:56 UTC	[NL/DOF] Forward returned nop value instead of modifying	03 October 2023, 12:11:37 UTC
9529d34	Thomas Fischer	22 September 2023, 12:35:24 UTC	[T/TRM] Add second output config	03 October 2023, 12:11:37 UTC
e58aa28	Thomas Fischer	22 September 2023, 12:33:41 UTC	[T/TRM/LinearMechanics] Use meshes instead of geometry	03 October 2023, 12:11:37 UTC
a23c038	Dmitri Naumov	28 September 2023, 14:39:47 UTC	[MGTL] Fix name of a public class member	02 October 2023, 22:02:36 UTC
62300af	Dmitri Naumov	28 September 2023, 14:40:41 UTC	[MGTL] Remove unused getMesh from the interface	02 October 2023, 22:02:36 UTC
242f013	Dmitri Naumov	28 September 2023, 14:39:47 UTC	[MGTL] Fix name of a public class member	02 October 2023, 22:02:36 UTC
b6a3c74	Dmitri Naumov	28 September 2023, 12:52:08 UTC	[MGTL] Extract common serial/petsc case code	02 October 2023, 22:02:36 UTC
9ca37af	Dmitri Naumov	28 September 2023, 14:18:16 UTC	[MGTL] Pass element's id to created boundary elems This ensures correct bulk_node_ids map	02 October 2023, 22:02:36 UTC
d37b6ae	Dmitri Naumov	29 September 2023, 11:22:26 UTC	[T/MGTL] Construct meshes from geometry square	02 October 2023, 22:02:36 UTC
ccbca34	Lars Bilke	29 September 2023, 12:24:40 UTC	[cmake] Fixed index bug in AddTest when using vtkdiff-mesh.	02 October 2023, 22:02:36 UTC
a6c00c5	Dmitry Yu. Naumov	02 October 2023, 15:59:38 UTC	Merge branch 'timeloop-refactorings' into 'master' Small refactorings of the timeloop See merge request ogs/ogs!4748	02 October 2023, 15:59:38 UTC
b132260	Christoph Lehmann	28 September 2023, 12:47:37 UTC	[PL] Removed unused method	02 October 2023, 14:41:31 UTC
4ef9479	Christoph Lehmann	28 September 2023, 12:45:52 UTC	[PL] Extracted preOutputInitialConditions() method	02 October 2023, 14:41:31 UTC
f6a32cd	Christoph Lehmann	28 September 2023, 12:25:50 UTC	[PL] Changed lambda to separate method	02 October 2023, 14:18:41 UTC
4037b59	Christoph Lehmann	28 September 2023, 12:10:57 UTC	[PL] Added documentation	02 October 2023, 14:18:41 UTC
5f2b6db	Christoph Lehmann	28 September 2023, 11:41:35 UTC	[PL] Renamed method doNonlinearIteration() ... to preTsNonlinearSolvePostTs()	02 October 2023, 14:18:41 UTC
e948d10	Dmitri Naumov	02 October 2023, 09:11:24 UTC	Remove spdlog dependency for Geo and MathLibs The spdlog is public in BaseLib and repeating it in on BaseLib dependent libraries is not necessary and violates the ODR.	02 October 2023, 11:00:27 UTC
3abcab8	Dmitry Yu. Naumov	29 September 2023, 14:43:23 UTC	Merge branch 'UseMaterialSpatialDistributionMapAsValue' into 'master' Use MaterialSpatialDistributionMap as value See merge request ogs/ogs!4745	29 September 2023, 14:43:23 UTC
1585744	Lars Bilke	29 September 2023, 13:25:51 UTC	Merge branch 'bundled-fmt' into 'master' Use bundled fmt from spdlog See merge request ogs/ogs!4750	29 September 2023, 13:25:51 UTC
3e5b2ee	Dmitri Naumov	27 September 2023, 15:25:34 UTC	[PL] Use MaterialSpatialDistr.Map as value The structure is small and does not require to be stored on heap.	29 September 2023, 12:42:33 UTC
bc053d4	Lars Bilke	29 September 2023, 11:58:26 UTC	[cmake gcc 13.2.1 add -Wno-stringop-overflow.	29 September 2023, 11:58:26 UTC
ed93674	project_120_bot2	29 September 2023, 10:31:02 UTC	[versions] Updated cpm cache info.	29 September 2023, 10:53:31 UTC
0ea50cf	Lars Bilke	29 September 2023, 09:58:54 UTC	[guix] Use bundled fmt.	29 September 2023, 10:53:31 UTC
c813f3a	Lars Bilke	29 September 2023, 09:58:29 UTC	Use bundled fmt in code.	29 September 2023, 10:53:31 UTC
fe972b8	Lars Bilke	28 September 2023, 15:21:19 UTC	[cmake] Use bundled fmt from spdlog.	29 September 2023, 10:53:31 UTC
3f62408	Dmitry Yu. Naumov	29 September 2023, 08:39:06 UTC	Merge branch 'rename-is-linear' into 'master' Renamed tag <is_linear> to <linear> See merge request ogs/ogs!4747	29 September 2023, 08:39:06 UTC
67b83b9	Christoph Lehmann	28 September 2023, 10:40:07 UTC	[T/CT] Updated paths sed -i -e 's/is_linear/linear/g' ProcessLib/ComponentTransport/Tests.cmake	29 September 2023, 05:32:24 UTC
27fd2fa	Christoph Lehmann	28 September 2023, 08:34:39 UTC	[T] Renamed directories containing is_linear for f in `find . -type d -name 'is_linear'`; do git ls-files --error-unmatch "$f" &>/dev/null \|\| continue; tgt="${f//is_linear/linear}"; mkdir "$tgt"; git mv "$f"/* "$tgt" \|\| break; done	29 September 2023, 05:32:24 UTC
625fff0	Christoph Lehmann	28 September 2023, 08:31:25 UTC	[Doc] Renamed a file containing is_linear for f in `find . -type f -name 'is_linear'`; do git ls-files --error-unmatch "$f" &>/dev/null \|\| continue; git mv "$f" "${f//is_linear/linear}" \|\| break; done	29 September 2023, 05:32:24 UTC
b44d2f7	Christoph Lehmann	28 September 2023, 08:10:04 UTC	[T, Doc] Renamed is_linear ag -l -s 'is_linear' Documentation/ Tests/Data/ \| xargs sed -i -e 's/is_linear/linear/g'	29 September 2023, 05:32:24 UTC
9c5be18	Christoph Lehmann	28 September 2023, 08:05:04 UTC	[PL/CT] Renamed is_linear ag -l '"is_linear"' \| xargs sed -i -e 's/"is_linear"/"linear"/' ag -l -s '__is_linear' \| xargs sed -i -e 's/__is_linear/__linear/'	29 September 2023, 05:32:13 UTC
68cb163	Lars Bilke	28 September 2023, 09:46:31 UTC	Merge branch 'fix-eigen-unsupported-build' into 'master' Fix build if not using unsupported Eigen parts Closes #3431 See merge request ogs/ogs!4746	28 September 2023, 09:46:31 UTC
2e68652	Dmitry Yu. Naumov	28 September 2023, 08:26:38 UTC	Merge branch 'UseMediaInSmallDeformation' into 'master' SmallDeformation uses media for solid density evaluation See merge request ogs/ogs!4739	28 September 2023, 08:26:38 UTC
8602b8c	Christoph Lehmann	28 September 2023, 07:20:55 UTC	[MaL] Fix build if not using unsupported Eigen parts	28 September 2023, 07:20:55 UTC
753d732	Dmitri Naumov	22 September 2023, 13:43:02 UTC	[T/M] Replace group-parameter by multiple media	27 September 2023, 15:21:04 UTC
9a445b6	Dmitri Naumov	22 September 2023, 12:55:24 UTC	[T/TRM] Slightly relax ctest's tolerance	27 September 2023, 15:21:04 UTC
af1f0a4	Dmitri Naumov	21 September 2023, 16:14:20 UTC	[T/M] Renumber resulting mesh's material ids This avoids mentioning of the material id 6 in the medium definition.	27 September 2023, 15:21:04 UTC
0733759	Dmitri Naumov	19 September 2023, 17:22:33 UTC	[doc] Fix links in SmallDeformationNonlocal pcs	27 September 2023, 15:21:04 UTC
9db1eac	Dmitri Naumov	19 September 2023, 17:08:27 UTC	[T/M] Automatic formatting of the notebook	27 September 2023, 15:21:03 UTC
224f01d	Dmitri Naumov	19 September 2023, 17:03:31 UTC	[T/M] Update python notebook adding media	27 September 2023, 15:21:03 UTC
5498656	Dmitri Naumov	19 September 2023, 17:02:12 UTC	[T/M] Add media ids for some projects This is specific to the project and is easier done by hand than a script.	27 September 2023, 15:21:03 UTC
c212897	Dmitri Naumov	19 September 2023, 12:07:30 UTC	[T/M] Update all SMALL_DEFORMATION project files Adding media description and using constant density property where possible. In other cases refer to the existing parameter.	27 September 2023, 15:21:03 UTC
ac80233	Dmitri Naumov	18 September 2023, 14:58:28 UTC	[PL/SD] Use media replacing solid_density The evaluation of solid density is moved to the updateConstitutiveRelations.	27 September 2023, 15:21:03 UTC
5117174	Dmitri Naumov	17 September 2023, 11:05:03 UTC	[PL/SD] Pass media map to process creation	27 September 2023, 15:16:28 UTC
1747ca8	Dmitry Yu. Naumov	27 September 2023, 12:42:56 UTC	Merge branch 'rtp-compute-only-upon-timestep-change' into 'master' RTP Acceleration Step 2: Compute linear solver only upon timestep change See merge request ogs/ogs!4730	27 September 2023, 12:42:56 UTC
cf28ca6	Lars Bilke	27 September 2023, 10:03:56 UTC	[web] Made installing master pip package more prominent.	27 September 2023, 10:03:56 UTC
c891084	Lars Bilke	26 September 2023, 11:13:40 UTC	[T] Skip web site generation on performance_measurements.ipynb.	26 September 2023, 11:13:40 UTC

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