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Revision | Author | Date | Message | Commit Date |
---|---|---|---|---|
7f551d2 | Lars Bilke | 18 October 2023, 11:38:02 UTC | Merge branch 'notebook-runtime' into 'master' [ci] Limit max notebook runtime in MR pipelines to 10 minutes See merge request ogs/ogs!4769 | 18 October 2023, 11:38:02 UTC |
8b61a03 | Lars Bilke | 18 October 2023, 11:36:04 UTC | [ci] Limit MR pipelines to not LARGE notebooks (< 600 s). | 18 October 2023, 11:36:04 UTC |
be876c9 | Lars Bilke | 18 October 2023, 11:35:21 UTC | [ci] Increase LARGE notebooks to 600 s (was 60 s). | 18 October 2023, 11:35:21 UTC |
467d052 | Dmitry Yu. Naumov | 18 October 2023, 09:47:54 UTC | Merge branch 'StatesInSmallDeformations' into 'master' Extract constitutive relations in SmallDeformation process See merge request ogs/ogs!4763 | 18 October 2023, 09:47:54 UTC |
69bbd6f | Dmitri Naumov | 13 October 2023, 12:13:21 UTC | [PL/SD] Move SD-specific MaterialForces.h | 17 October 2023, 21:33:06 UTC |
19867ce | Dmitri Naumov | 13 October 2023, 11:33:08 UTC | [PL/SD] Move free energy density into solid model | 17 October 2023, 21:33:06 UTC |
bc984dc | Dmitri Naumov | 11 October 2023, 13:57:28 UTC | [PL/SD] Use StrongType for temperature | 17 October 2023, 21:33:06 UTC |
5c46881 | Dmitri Naumov | 11 October 2023, 13:47:48 UTC | [PL/SD] Use StrongType for gravity | 17 October 2023, 21:33:06 UTC |
42ed73c | Dmitri Naumov | 11 October 2023, 13:37:02 UTC | [PL/SD] Use StrongType for solid density | 17 October 2023, 21:33:06 UTC |
08dce7a | Dmitri Naumov | 10 October 2023, 12:58:04 UTC | [PL/SD] Move shape function independent fct in I/F | 17 October 2023, 21:33:06 UTC |
cd49e2e | Dmitri Naumov | 10 October 2023, 12:46:41 UTC | [PL/SD] Use constitutive relations eval in FEM - Removing sigma and eps from IPData, now stored in current state and prev state. - Remove associated ip getter and setter, now handled through reflections - Stress, stiffness tensor, and volumetric body force are now fetched from newly updated constitutive data (CD). | 17 October 2023, 21:33:06 UTC |
4a4af87 | Dmitri Naumov | 22 September 2023, 13:38:15 UTC | [PL/SD] Add ConstitutiveRelations; not yet used | 17 October 2023, 21:33:06 UTC |
bdb94b6 | Dmitri Naumov | 22 September 2023, 16:41:12 UTC | [PL/SD] Move solid material states in LA Separating the solid material states from integration point data. Also move all but one functions into the local assembler, since they are no longer accessing the integration point data. | 17 October 2023, 21:33:06 UTC |
fdf4056 | Dmitri Naumov | 22 September 2023, 15:35:46 UTC | [PL/SD] Move elem.-type independent members to LA Especially the solid_material is now stored once per element and not in every integration point. | 17 October 2023, 21:33:06 UTC |
f997d0c | Dmitry Yu. Naumov | 17 October 2023, 15:10:01 UTC | Merge branch 'vtkdiff-field-data' into 'master' Add a test case using vtkdiff for field data See merge request ogs/ogs!4760 | 17 October 2023, 15:10:01 UTC |
5d20e35 | Lars Bilke | 17 October 2023, 11:31:57 UTC | [nb] Converted to py:percent format. pipx run jupytext --to py:percent Tests/Data/Mechanics/Linear/test_ip_data/2D-clamped-gravity.ipynb | 17 October 2023, 11:31:57 UTC |
30038da | Lars Bilke | 17 October 2023, 11:27:51 UTC | Merge branch 'authors' into 'master' Update authors in .cff-file. Closes #3304 See merge request ogs/ogs!4765 | 17 October 2023, 11:27:51 UTC |
75a44dc | Lars Bilke | 17 October 2023, 11:27:51 UTC | Update authors in .cff-file. | 17 October 2023, 11:27:51 UTC |
08ef68b | Christoph Lehmann | 13 October 2023, 09:02:23 UTC | [scr] Updated vtkdiff hash after GitHub PR merge | 17 October 2023, 11:21:12 UTC |
cf17bee | Christoph Lehmann | 11 October 2023, 08:39:52 UTC | [T] Added test with nontrivial IP data field | 17 October 2023, 11:21:12 UTC |
b78fa53 | Dmitry Yu. Naumov | 17 October 2023, 11:11:38 UTC | Merge branch 'ruff' into 'master' [ci] Add ruff job and enable notebook linting See merge request ogs/ogs!4767 | 17 October 2023, 11:11:38 UTC |
e39b380 | Lars Bilke | 17 October 2023, 07:48:28 UTC | [ci] Add ruff job. Always runs green but reports to GitLabs code quality. | 17 October 2023, 11:11:08 UTC |
7d2e8cf | Lars Bilke | 17 October 2023, 07:47:38 UTC | [python] Set includes and excludes when running ruff manually. | 17 October 2023, 11:11:08 UTC |
af07cee | Lars Bilke | 17 October 2023, 07:46:55 UTC | [pre-commit] Enable ruff on notebooks. | 17 October 2023, 11:11:08 UTC |
d6e600d | Lars Bilke | 17 October 2023, 07:45:41 UTC | [pre-commit] Update ruff to 0.1.0. | 17 October 2023, 11:11:08 UTC |
1a1ed45 | Lars Bilke | 17 October 2023, 09:57:08 UTC | Merge branch 'createmesh' into 'master' [web] Add jupyter notebook tutorial on mesh generation See merge request ogs/ogs!4740 | 17 October 2023, 09:57:08 UTC |
6755be8 | Lars Bilke | 16 October 2023, 10:58:57 UTC | Merge branch 'fix-frontend-petsc' into 'master' Fix frontend PETSc and relax notebook format requirements See merge request ogs/ogs!4764 | 16 October 2023, 10:58:57 UTC |
254dcfd | Lars Bilke | 16 October 2023, 08:45:56 UTC | [ci] Fix regex for web only pipelines. | 16 October 2023, 10:30:54 UTC |
29cade5 | Lars Bilke | 16 October 2023, 08:33:46 UTC | [ci] Generate web preview on testrunner and markdown notebook changes. | 16 October 2023, 10:30:54 UTC |
4f967b6 | Lars Bilke | 16 October 2023, 08:15:14 UTC | [nb] Specific frontmatter format ignored on SKIP_WEB notebooks. | 16 October 2023, 10:30:53 UTC |
1585112 | Lars Bilke | 16 October 2023, 07:24:00 UTC | [eve] Specifying --with-cc and -cxx breaks petsc build. | 16 October 2023, 07:29:49 UTC |
077fc88 | Lars Bilke | 13 October 2023, 12:16:35 UTC | [web] Fixed links in notebook. | 13 October 2023, 12:17:02 UTC |
09f5899 | Lars Bilke | 12 October 2023, 09:07:40 UTC | [web] Some notebook formatting. | 13 October 2023, 12:17:02 UTC |
3cdc46b | Lars Bilke | 12 October 2023, 06:21:39 UTC | [web] Proper out_dir in notebook. | 13 October 2023, 12:17:02 UTC |
979dff7 | Lars Bilke | 11 October 2023, 16:52:03 UTC | [web] spellcheck notebook. | 13 October 2023, 12:17:01 UTC |
1a79bee | Lars Bilke | 11 October 2023, 16:50:51 UTC | [web] markdownlint notebook. | 13 October 2023, 12:17:01 UTC |
62553b9 | Lars Bilke | 11 October 2023, 16:05:03 UTC | [web] Converted meshing tutorial notebook to markdown. | 13 October 2023, 12:17:01 UTC |
486882b | Lars Bilke | 29 September 2023, 13:30:37 UTC | [web] Added missing venv instruction. | 13 October 2023, 12:17:01 UTC |
3237f61 | Lars Bilke | 29 September 2023, 13:28:32 UTC | [web] Give the page a proper name. | 13 October 2023, 12:17:01 UTC |
f01fd48 | Lars Bilke | 29 September 2023, 13:25:32 UTC | [web] Simplified gallery template. Fixed issue of missing pages when notebook direct conversion is used and no image is given in page metadata. | 13 October 2023, 12:17:00 UTC |
e40cd85 | Christoph Lehmann | 27 September 2023, 13:53:49 UTC | Some changes to the mesh tutorial | 13 October 2023, 12:17:00 UTC |
dfb89a4 | FriederL | 06 September 2023, 09:12:30 UTC | [web] Meshing tutorial notebook | 13 October 2023, 12:16:59 UTC |
1402565 | Lars Bilke | 13 October 2023, 11:49:45 UTC | Revert accidentally increased PETSc version... | 13 October 2023, 11:49:45 UTC |
41885ee | Lars Bilke | 13 October 2023, 11:00:27 UTC | [nb] Added (dummy) frontmatter on check_point_cloud.ipynb. | 13 October 2023, 11:00:27 UTC |
f644ae8 | Lars Bilke | 13 October 2023, 08:56:21 UTC | [nb] Added (dummy) frontmatter on ModCamClay_TestIsotrop.ipynb. | 13 October 2023, 08:56:21 UTC |
f8484b6 | Lars Bilke | 13 October 2023, 08:55:13 UTC | [ci,nb] Fixed testrunner for failed notebook runs. | 13 October 2023, 08:55:13 UTC |
2169204 | Lars Bilke | 13 October 2023, 06:43:09 UTC | Merge branch 'nb-testrunnere' into 'master' [ci,nb] Refactored notebook testrunner. See merge request ogs/ogs!4762 | 13 October 2023, 06:43:09 UTC |
461d280 | Lars Bilke | 12 October 2023, 12:11:05 UTC | [ci] Add check=True to subprocess.run. | 13 October 2023, 06:29:40 UTC |
6d473c9 | Lars Bilke | 12 October 2023, 11:27:15 UTC | [ci] On web only pipelines run notebook benchmarks only. | 13 October 2023, 06:29:40 UTC |
cba134d | Lars Bilke | 12 October 2023, 10:50:03 UTC | [nb] Removed nb2hugo dependency. | 13 October 2023, 06:29:40 UTC |
def7173 | Lars Bilke | 12 October 2023, 09:47:25 UTC | [ci,nb] Check for first markdown cell. | 13 October 2023, 06:29:40 UTC |
28ce66f | Lars Bilke | 12 October 2023, 09:31:56 UTC | [nb] Format notebooks with black. | 13 October 2023, 06:29:40 UTC |
ef617dd | Lars Bilke | 12 October 2023, 09:31:20 UTC | [nb] Update notebooks to use regular toml frontmatter. | 13 October 2023, 06:29:39 UTC |
3f7236b | Lars Bilke | 12 October 2023, 09:20:54 UTC | [web] Update docs for toml frontmatter in notebooks. | 13 October 2023, 06:29:39 UTC |
2cef617 | Lars Bilke | 12 October 2023, 09:09:11 UTC | [ci,nb] Refactored notebook testrunner. nb2hugo not required anymore. special frontmatter in ipynb notebooks not required anymore, use regular toml-frontmatter | 13 October 2023, 06:27:57 UTC |
0be7f58 | Dmitry Yu. Naumov | 12 October 2023, 19:55:31 UTC | Merge branch 'fix-is-linear-output-off-by-one' into 'master' Fixing off-by-one-timestep error in OGS's output when <linear> is used. See merge request ogs/ogs!4749 | 12 October 2023, 19:55:31 UTC |
417f887 | Christoph Lehmann | 29 September 2023, 07:56:19 UTC | [T] Added check to notebook | 11 October 2023, 18:17:39 UTC |
697fa32 | Christoph Lehmann | 28 September 2023, 11:39:15 UTC | [PL] Added preOutput() hook | 11 October 2023, 18:17:39 UTC |
fdb2dbc | Christoph Lehmann | 29 September 2023, 06:46:00 UTC | [PL] Added method isOutputStep() | 11 October 2023, 18:17:39 UTC |
37134cf | Christoph Lehmann | 29 September 2023, 06:46:24 UTC | [PL/TL] Added preOutputForAllProcesses() | 11 October 2023, 18:17:39 UTC |
fb3409b | Christoph Lehmann | 29 September 2023, 06:02:53 UTC | [PL/TL] Added comment | 11 October 2023, 18:16:45 UTC |
10a5c45 | Christoph Lehmann | 29 September 2023, 05:36:51 UTC | [PL/TL] Added preOutput callbacks to IC output | 11 October 2023, 18:16:45 UTC |
9e3ecb2 | Christoph Lehmann | 09 October 2023, 07:45:36 UTC | [T] Updated reference files ... to add [Am-243]FlowRate | 11 October 2023, 18:16:45 UTC |
1dbf15c | Christoph Lehmann | 04 October 2023, 07:51:01 UTC | [T] Added Am-243 output and tests | 11 October 2023, 18:16:45 UTC |
1eeedb9 | Dmitry Yu. Naumov | 11 October 2023, 17:07:09 UTC | Merge branch 'bgr_cl_benchmark' into 'master' [RT/Docu] add a reactive transport benchmark of co2 injection See merge request ogs/ogs!4729 | 11 October 2023, 17:07:09 UTC |
1bca3ab | Lars Bilke | 11 October 2023, 16:20:50 UTC | [T] notebook spelling fixes. | 11 October 2023, 16:20:50 UTC |
89eb9f8 | Lars Bilke | 11 October 2023, 16:17:08 UTC | [T] markdownlint notebook. | 11 October 2023, 16:17:08 UTC |
6596c6a | Lars Bilke | 11 October 2023, 16:13:16 UTC | [T] Converted notebook to markdown. | 11 October 2023, 16:15:56 UTC |
c875cef | Shuang Chen | 13 September 2023, 08:13:44 UTC | documentation modified following the suggestions | 11 October 2023, 16:15:56 UTC |
45fb380 | Shuang Chen | 10 September 2023, 11:47:30 UTC | change the benchmark to jupyter format | 11 October 2023, 16:15:56 UTC |
20f1974 | Shuang Chen | 07 September 2023, 13:11:25 UTC | [RT/Docu] add a reactive transport benchmark of co2 injection trying to solve the spelling issue following the suggestion. | 11 October 2023, 16:15:55 UTC |
abb8a73 | Lars Bilke | 11 October 2023, 12:49:59 UTC | Merge branch 'BHE_Meshing_Doc' into 'master' [Web] Tutorial of creating mesh with BHEs and enhanced notebook to web conversion See merge request ogs/ogs!4704 | 11 October 2023, 12:49:59 UTC |
71343c1 | Lars Bilke | 11 October 2023, 07:58:17 UTC | [web] Updated docs on notebook usage. | 11 October 2023, 12:47:00 UTC |
9260b46 | Lars Bilke | 11 October 2023, 07:32:03 UTC | [T] Convert to toml frontmatter. | 11 October 2023, 09:04:19 UTC |
73c6a32 | Lars Bilke | 11 October 2023, 07:31:43 UTC | [T,nb] Enforce toml frontmatter on notebooks, add checks. | 11 October 2023, 09:04:18 UTC |
7f738fb | Lars Bilke | 11 October 2023, 07:26:42 UTC | [T] DiscWithHole nb: fix TUBAF logo. | 11 October 2023, 09:04:18 UTC |
d1bd958 | Lars Bilke | 10 October 2023, 15:25:55 UTC | [vale] Finally fixing the notebook, vale reports wrong line numbers! When using curly braces in code block, e.g. ```python gmsh.write(f"{out_dir}/{bhe_mesh_file_name}.msh") ``` It reports the above line instead of the actual error line... :-( | 10 October 2023, 15:25:55 UTC |
571f628 | Lars Bilke | 10 October 2023, 12:11:47 UTC | [T,web] ipynb notebooks to web conversion in build dir. Was done in source dir. Now is in line with jupytext notebooks. | 10 October 2023, 12:12:49 UTC |
8c6c1f0 | Lars Bilke | 10 October 2023, 11:41:10 UTC | [T] Renamed notebook for better url. | 10 October 2023, 12:12:49 UTC |
fb1cb18 | Lars Bilke | 10 October 2023, 11:39:52 UTC | [T] Output ctest command (helpful for reproducing). | 10 October 2023, 12:12:48 UTC |
e67432b | Lars Bilke | 10 October 2023, 11:36:56 UTC | [T] Fixed testrunner jupytext variable. | 10 October 2023, 12:12:48 UTC |
58b206e | Lars Bilke | 10 October 2023, 08:22:44 UTC | [ci] Update pre-commit and install go (vale) in pre-commit image. | 10 October 2023, 11:46:09 UTC |
fd49c5f | Lars Bilke | 10 October 2023, 08:11:29 UTC | [web] Adapt bhe meshing tutorial download link. | 10 October 2023, 11:46:09 UTC |
0f7e783 | Lars Bilke | 10 October 2023, 08:01:40 UTC | [ci] Jupytext notebooks can be downloaded as ipynb from the website. | 10 October 2023, 11:46:09 UTC |
b819410 | Lars Bilke | 10 October 2023, 08:00:20 UTC | [ci] Run vale directly and use official pre-commit hook. | 10 October 2023, 11:46:09 UTC |
7230ed3 | Lars Bilke | 10 October 2023, 06:47:53 UTC | [T, web] Add BHE tutorial to ctest. | 10 October 2023, 11:46:09 UTC |
d664221 | Lars Bilke | 10 October 2023, 06:47:35 UTC | [T] Notebook testrunner for jupytext based web pages. | 10 October 2023, 11:46:09 UTC |
7cb7fa7 | Lars Bilke | 10 October 2023, 06:46:51 UTC | [cmake] Add PYTHON_PACKAGES argument to NotebookTest(). | 10 October 2023, 11:46:08 UTC |
78dbff0 | Lars Bilke | 10 October 2023, 06:42:24 UTC | [web] Mount release preset build dir for converted notebooks. | 10 October 2023, 11:46:08 UTC |
5690d5e | Lars Bilke | 10 October 2023, 06:40:30 UTC | [web] Use mount config also for static files configuration. | 10 October 2023, 09:11:32 UTC |
4aa6755 | Lars Bilke | 10 October 2023, 06:39:44 UTC | [web] Exclude md files prefixed with `notebook-`. | 10 October 2023, 09:11:32 UTC |
94098fa | Lars Bilke | 10 October 2023, 06:38:01 UTC | Notebooks on web page need to prefixed with `notebook-`. | 10 October 2023, 09:11:32 UTC |
079e664 | Lars Bilke | 09 October 2023, 13:08:59 UTC | Some vale fixes. | 10 October 2023, 09:11:32 UTC |
395d733 | Lars Bilke | 09 October 2023, 11:48:21 UTC | markdownlint. | 10 October 2023, 09:11:31 UTC |
0e17a22 | Lars Bilke | 09 October 2023, 11:46:11 UTC | [nb] Converted tutorial to markdown. pipx run jupytext --to md web/content/docs/tutorials/bhe_meshing/bhe_meshing.ipynb | 10 October 2023, 09:11:31 UTC |
59be4f5 | Haibing Shao | 03 October 2023, 13:34:11 UTC | Add tutorial of BHE meshing Add more explanation explanation and auto tag generation added fix spelling error Move files to new location minor changes add figure showing the mesh add meta data [docs] Renamed bhe meshing notebook and small syntax adaptions. fix doc according to reviewer's comments fix break line error break each sentence into separate lines add explanation of TagBS address reviewers' comments add explanation of version 2.2 additional explanation of (d-2) and vtu file conversion cell added new figures with explanation and separate text blocks added boreholes 1D png file added Upload New File minor changes Deleted previous excel file new excel file added deleted previous pictures new 3 pictures added new bhe_meshing file added deleted 2 previous pictures fix two spelling errors update to latest version correct file name and link move to tutorial folder add link to image fix the delimiter error add link to process description fix end of line error add 2 checks one more check add the conversion success message add another check on the mesh | 10 October 2023, 09:11:31 UTC |
3f1d32e | Lars Bilke | 27 September 2023, 08:10:58 UTC | [pre-commit] Ignore ipynb files on codespell-check. | 10 October 2023, 09:11:31 UTC |
97dbae5 | Dmitry Yu. Naumov | 09 October 2023, 15:08:46 UTC | Merge branch 'reduce-linear-solver-includes' into 'master' Reduce "scope" of linear solver includes See merge request ogs/ogs!4754 | 09 October 2023, 15:08:46 UTC |
4d7995d | Dmitry Yu. Naumov | 09 October 2023, 14:50:43 UTC | Merge branch 'DE_VoxelFault' into 'master' AddFaultToVoxelGrid added to DataExplorer See merge request ogs/ogs!4693 | 09 October 2023, 14:50:43 UTC |
a5fc96e | Dmitry Yu. Naumov | 09 October 2023, 14:31:28 UTC | Merge branch 'FixHdfData' into 'master' Fix bug in XDMF interface: Add missing uchar data type Closes #3434 See merge request ogs/ogs!4755 | 09 October 2023, 14:31:28 UTC |