https://github.com/dmlc/dgl

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ed8a7be Update README.txt 17 July 2020, 15:29:55 UTC
b55b7cb Update README.txt 17 July 2020, 15:28:23 UTC
9de930b Update README.md 17 July 2020, 15:21:28 UTC
bba0b94 Update index.rst (#1706) 26 June 2020, 14:55:16 UTC
eae4089 remove edge list creation 23 June 2020, 13:27:10 UTC
5626058 update conda build 07 April 2020, 06:23:36 UTC
239142b update version 07 April 2020, 06:22:13 UTC
8188a0c Merge branch 'master' into 0.4.x 07 April 2020, 06:21:42 UTC
ff244df post-release 06 April 2020, 14:31:51 UTC
43d9f43 backend selection (#1424) 06 April 2020, 12:44:29 UTC
91f7ff8 fix #1421 (#1422) 06 April 2020, 04:33:43 UTC
7c47d8c [Feature] Simplify shared memory graph index (#1381) * simplify shared memory graph index. * fix. * remove edge_dir in SharedMemGraphStore. * avoid creating shared-mem graph store with from_csr. * simplify from_csr. * add comments. * fix lint. * remove the test. * fix compilation error. * fix a bug. * fix a bug. Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal> 05 April 2020, 22:33:47 UTC
1b152bf [Doc & Tutorial] Fix dgl.batch and GAT (#1418) * Update doc and tutorials * Fix 03 April 2020, 17:23:22 UTC
0ee95a5 Update (#1419) 03 April 2020, 17:22:16 UTC
24dc71f [BUG] Fix #1409 (#1411) * [BUG] Fix #1409 * fix test 03 April 2020, 12:45:56 UTC
b94d3da [Docs] Fix doc build doesn't work for nn.tensorflow and nn.mxnet (#1413) (#1417) * fix * lint * fix 03 April 2020, 12:33:54 UTC
d3560b7 [DGL-LifeSci] Documentation (#1414) * Update * Update * Update 02 April 2020, 13:19:07 UTC
7e0893e [Docs] Fix doc build doesn't work for nn.tensorflow and nn.mxnet (#1413) * fix * lint * fix 02 April 2020, 12:31:07 UTC
31a636a [README] New stuffs from 0.4.3 (#1412) 02 April 2020, 07:33:57 UTC
0ee9f56 [DGL-LifeSci] Final release preparation for 0.2.1 02 April 2020, 07:02:50 UTC
00efec6 Update README.md 01 April 2020, 08:08:36 UTC
b76ac11 [DGL-LifeSci] Release Preparation (CI, Docker, Conda build) (#1399) * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * add docs * Fix style * Fix lint * Bug fix * Fix test * Update * Update * Update * Update Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 01 April 2020, 07:45:03 UTC
e1d90f9 update version 30 March 2020, 16:21:04 UTC
8a061d1 update version 30 March 2020, 16:14:46 UTC
4a281ff Merge branch 'master' into 0.4.x 30 March 2020, 16:14:14 UTC
e4cc818 [Windows] fix compilation issues on vs2015 (#1405) * [Windows] fix compilation issues on vs2015 * fix test 30 March 2020, 14:08:26 UTC
e9440ac [TF] TF backend fix and new logic to choose backend (#1393) * TF backend fix and new logic to choose backend * fix * fix * fix * fix * fix backend * fix * dlpack alignment * add flag * flag * lint * lint * remove unused * several fixes Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 30 March 2020, 10:45:17 UTC
4b4186f [Sampler] Change argument type of fanout from list to dict (#1403) 30 March 2020, 07:52:46 UTC
97b08fb [BUG] fix crash in neighbor sampling w/ replacement on 0 degree nodes (#1402) 30 March 2020, 06:48:23 UTC
e3a9a6b add an optional include_dst_in_src argument (#1401) 30 March 2020, 04:06:12 UTC
af61e2f [Feature] Support nn modules for bipartite graphs. (#1392) * init gat * fix * gin * 7 nn modules * rename & lint * upd * upd * fix lint * upd test * upd * lint * shape check * upd * lint * address comments * update tensorflow Co-authored-by: Quan Gan <coin2028@hotmail.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 29 March 2020, 08:48:38 UTC
67cb7a4 [Feature] Deprecate multigraph (#1389) * Deprecate multi-graph * Handle heterograph and edge_ids * lint * Fix * Remove multigraph in C++ end * Fix lint * Add some test and fix something * Fix * Fix * upd * Fix some test case * Fix * Fix Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 28 March 2020, 13:31:24 UTC
3efb5d8 [NN] Add HeteroGraphConv module for cleaner module definition (#1385) * Add HeteroGraphConv * add custom aggregator; some docstring * debugging * rm print * fix some acc bugs * fix initialization problem in weight basis * passed tests * lint * fix graphconv flag; add error message * add mxnet heteroconv * more fix for mx * lint * fix torch cuda test * fix mx test_nn * add exhaust test for graphconv * add tf heteroconv * fix comment 27 March 2020, 10:47:06 UTC
bbfff8c [Feature] Casting between DGLGraph and DGLHeteroGraph (#1391) * [Feature] Casting between DGLGraph and DGLHeteroGraph * lint * address comments Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 27 March 2020, 05:34:55 UTC
ebda932 [CI] Tensorflow ci (#1397) * fix * fix 26 March 2020, 19:35:24 UTC
1e27e90 [MXNet] Patch mxnet unittest (#1395) * patch * turn off tf test * skip test * fix 25 March 2020, 17:05:59 UTC
08fcda3 [Doc] Fix link to backends docs (#1376) Co-authored-by: Tong He <hetong007@gmail.com> 25 March 2020, 10:20:09 UTC
b9c65e9 [BUG] Another fix on remove edges when all edges are removed (#1386) * [BUG] Another fix on remove edges when all edges are removed * fix mxnet 23 March 2020, 11:04:52 UTC
d27b485 [BUG] Fix remove_edges crashing with empty edge ID tensors (#1384) 22 March 2020, 13:09:44 UTC
a072140 [BUGFIX] don’t import dgl in the package. (#1382) * fix dgl data. * remove more. * fix. * fix. Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal> 22 March 2020, 08:29:16 UTC
10253a5 [BUGFIX] Fix is_multigraph in the construction from scipy coo matrix (#1357) * fix is_multigraph in from_coo. * add tests for partition. * fix. * Revert "add tests for partition." This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc. * fix everywhere from_scipy_sparse_matrix is used. 22 March 2020, 07:30:27 UTC
856de79 Update README Update README with both latest and stable doc links 22 March 2020, 02:44:16 UTC
2cdc4d3 [Doc] Patch tutorial (#1380) * patched 1_first * done 2_basics * done 4_batch * done 1_gcn, 9_gat, 2_capsule * 4_rgcn.py * revert * more fix 22 March 2020, 02:21:22 UTC
0f40c6e [Hetero] Replace card with num_nodes Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 20 March 2020, 08:56:53 UTC
1b9bc16 [KG]Update README and config (#1375) * Update README and config * upd Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal> 19 March 2020, 09:06:02 UTC
4af0202 [Bug] Multiple fixes (#1374) * multiple fixes * lint * lint x2 19 March 2020, 03:19:44 UTC
0a51dc5 [Bug] Fix dsttype in GraphSAGE minibatch model (#1371) * fix for new ntype API for blocks * adding two new interfaces 18 March 2020, 15:57:03 UTC
635dfb4 [DGL-KE] Add license to every file header (#1368) * update metis * update * update dataloader * update dataloader * new script * update * update * update * update * update * update * update * update dataloader * update * update * update * update * update * update * update * Add license to every filer header 17 March 2020, 09:46:18 UTC
f8ae635 [DGL-KE] Add METIS preprocessing pipeline (#1365) * update metis * update * update dataloader * update dataloader * new script * update * update * update * update * update * update * update * update dataloader * update * update * update * update * update 17 March 2020, 09:15:04 UTC
2ce0e21 Update (#1366) 16 March 2020, 14:00:19 UTC
1662757 Update instructions for building from source (#1363) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 16 March 2020, 11:38:36 UTC
6111ea4 [Model] RGCN mini-batch training; Better bipartite graph support (#1337) * change the model to use node embedding only * minibatch training * add readme * small fix * backward-compatible * backward compatible * modify to_block; rgcn changed * fix * fix transform * fix bug in unittest script * docstring * fix lint * add tests * address comments; fix offline eval * gitignore 16 March 2020, 10:58:06 UTC
9120ee6 Update README.md 15 March 2020, 15:47:58 UTC
d876680 [Model][Perf] Improve sage sampling performance (#1364) * improve speed * fix bugs * upd reg test 15 March 2020, 15:20:30 UTC
f9ad1c8 fix. (#1358) Co-authored-by: Chao Ma <mctt90@gmail.com> 15 March 2020, 04:23:32 UTC
eb71c80 [KG] partition a KG. (#1351) * partition a KG. * get tid. * support builtin * fix a minor bug. Co-authored-by: Chao Ma <mctt90@gmail.com> 15 March 2020, 03:53:44 UTC
545cc06 [DGL-LifeSci] WLN for Reaction Center Prediction (#1360) * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update 14 March 2020, 05:13:38 UTC
5a1ef70 [Optimization] Optimize performance of COOSort (#1349) * Fix coo_sort * Add COOSort test * Fix * omp * coo2csr can benefit from sorted coo * Add more test code * Add LIBCXX_ENABLE_PARALLEL_ALGORITHMS to Makefile * upd * Turn off LIBCXX_ENABLE_PARALLEL_ALGORITHMS by default Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> 13 March 2020, 14:39:36 UTC
f3b866f Update (#1359) 13 March 2020, 09:38:57 UTC
6c7c403 [Feature] Filtered MRR metrics for R-GCN example (#1298) * Add filtered metrics for R-GCN example * Add new line to end of file * Add evaluation protocol argument option for R-GCN example * Update README Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com> Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> 13 March 2020, 08:25:03 UTC
87842db Fix for dataloader (#1353) 12 March 2020, 11:09:46 UTC
3938b39 [BUGFIX] metis partition should generate a subgraph to the original graph. (#1352) * fix a partition. * add comments. 12 March 2020, 02:43:08 UTC
1a584ce [Feature] Improve the speed of to_bidirected (#1327) * make graph symmetric * call gklib routine. * use gklib version except in windows. * minor errors. * fix test. * update doc. * fix a compile error. * fix. * add comments for the new C API. * fix a bug. * address comments. * fix compile error. * fix comment. 11 March 2020, 05:44:32 UTC
9432cd6 fix sampler. (#1350) 11 March 2020, 03:01:03 UTC
988c8b2 [DOC] Improve the docstring of GATConv and new APIs (#1339) * upd * upd * upd * upd * upd 10 March 2020, 17:14:22 UTC
e658404 [KG] make batch size compatible with neg sample size (#1343) * adjust batch size. * fix for eval.py * adjust parameters in distributed training. * move code. 10 March 2020, 08:14:33 UTC
7b3a7b1 [Optimization] Optimize CompactGraph (#1328) * compact * prealloc memory for hashtable * Fix * upd * Reduce memory * upd Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal> 10 March 2020, 04:54:12 UTC
20e1bb4 rewrite to use dataloader (#1333) Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 10 March 2020, 01:22:41 UTC
d98c71e [DGL-KE] Clean up argument for DGL-KE (#1325) * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * clean up args * change args for eval * update * update * update * update num_worker=8 * add num_proc=1 * update * update * add eval percent * update * update * update * save emb * update * update * update * update * update * remove neg_chunk_size * update * update * update * remove * update * remove * change num_thread 09 March 2020, 15:11:56 UTC
53b39f0 [Error Message] Improve the error message (#1342) * patch * fix+1 * add readme * fix error message 09 March 2020, 13:14:39 UTC
a013992 [Test] Instruction for write regression test (#1341) * patch * fix+1 * add readme 09 March 2020, 12:26:58 UTC
9abe041 [Test] asv conf fix (#1338) * patch * fix+1 09 March 2020, 07:33:49 UTC
f9ba3cd [KGE] Kg loader (#1300) * Now dataset accepts user define datasets * UPdate README * Fix eval * Fix * Fix Freebase * Fix * Fix * upd * upd * Update README * Update some docstrings. * upd Co-authored-by: Ubuntu <ubuntu@ip-172-31-8-26.us-east-2.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-78.us-east-2.compute.internal> Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal> 09 March 2020, 06:57:40 UTC
614acf2 [KG] save config when saving the model (#1336) * save config. * save more. 09 March 2020, 01:00:18 UTC
7ee77f7 Fix submodule has submodules (#1332) Co-authored-by: Ubuntu <ubuntu@ip-172-31-60-78.ec2.internal> 08 March 2020, 18:40:10 UTC
081e5e0 [Fix] asv patch (#1330) 08 March 2020, 12:16:45 UTC
0e153c4 [Feature] add metis partitioning to DGL (#1308) * add metis. * add test. * construct partition id. * link to METIS github repo. * update metis. * add a tool for partitioning a graph. * update metis. * update. * update. * fix metis. * fix lint * fix indent. * another way of building metis. * disable metis in windows. * test windows * fix. * disable metis for windows properly. * fix for tensorflow. * skip test for gpu. * make graph symmetric * address comments. * more comments. * fix compile * fix a bug. * add test. * change the default #hops of HALO nodes. Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal> 08 March 2020, 07:24:03 UTC
a9520f7 [Model][Sampler] GraphSAGE model, bipartite graph conversion & remove edges API (#1297) * remove edge and to bipartite and graphsage with sampling * fixes * fixes * fixes * reenable multigpu training * fixes * compatibility in DGLGraph * rename to compact_as_bipartite * bugfix * lint * add offline inference * skip GPU tests * fix * addresses comments * fix * fix * fix * more tests * more docs and unit tests * workaround for empty slice on empty data 07 March 2020, 18:38:29 UTC
ce6e19f [Bugfix] Allows node types with no inbound/outbound edges (#1323) * add num nodes in ctors * fix * lint * addresses comments * replace with constexpr * remove function with rvalue reference * address comments 07 March 2020, 17:11:44 UTC
ac74233 fix csrtocoo (#1324) 07 March 2020, 04:25:37 UTC
9caff61 [Feature] More serialization support (#1295) * fix script * t * fix weird bugs * fix * fix * upload * fix * fix * lint * fix * tmp * fix serialization * fix * fix lint * fix message * fix * lint * address comment * fix * lint * fix * fix * fix * Remove duplicate serialization for meta graph Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com> 06 March 2020, 13:38:56 UTC
09ade2f upd (#1321) 06 March 2020, 06:17:48 UTC
19797bb [README] Update README.md (#1317) * Update README.md * Update README.md * Update README.md Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com> Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 05 March 2020, 17:31:38 UTC
978ac41 [NN] Fix RelGraphConv num_bases error message (#1309) * Fix RelGraphConv when num_bases is None * Improve error message in when num_bases is wrong * Fix integer modulo by zero exception when num_bases is 0 Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 05 March 2020, 17:00:48 UTC
4ec8f20 Update (#1319) 05 March 2020, 14:58:29 UTC
066d290 [Fix] Fix build on macos(clang) (#1318) * fix * data type * fix * fix * fix 05 March 2020, 13:17:33 UTC
e2db791 [Feature] Import subpackge based on backend of dgl.nn (#1305) * automatically select nn backend * rename load_backend to private * switch to backend_name Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com> 05 March 2020, 11:59:45 UTC
93ac29c [Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph (#1216) * upd * upd * upd * lint * fix * fix test * fix * fix * upd * upd * upd * upd * upd * upd * upd * upd * upd * upd * upd tutorial * upd * upd * fix kg * upd doc organization * refresh test * upd * refactor doc * fix lint Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 05 March 2020, 10:03:57 UTC
8874e83 [Bugfix] Fix missing lock intialization (#1314) This commit fixes a bug where the lock guard (for concurrently accessing the same scope from different threads) had basically no effect, due to being bound to a temporary only. Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 05 March 2020, 06:25:21 UTC
cbee427 [Model] Scene Graph Extraction Model with GluonCV (#1260) * add working scripts * add frcnn training script * remove redundent files * refactor validation computation, will optimize sgdet and training * validation finally finished * f-rcnn training * test reldn * rm file * update reldn training * data preprocess to h5 * temp * use coco json * fix conflict * new obj dataset for detection * update training * before cleanup * remove abundant files * add arg parse to train * cleanup code file * update * fix * add readme * add ipynb as demo * add demo pic * update readme * add demo script * improve paths * improve readme * add docstrings * fix args description * update readme * add models from s3 * update README Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 05 March 2020, 03:54:26 UTC
ce93330 [Doc] Fix the docstring of builtin functions. (#1303) * fix. * fix. * fix. * fix cmake. 04 March 2020, 19:38:05 UTC
6417458 [Test] Regression test script update (#1313) * regression test * script 04 March 2020, 17:17:02 UTC
eb0c954 Update README.md (#1307) * Update README.md add News section for zz request. * Update README.md * Update README.md Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 04 March 2020, 15:15:53 UTC
c23a61b fix s3 link (#1310) 04 March 2020, 13:01:29 UTC
349a48b Update README.md (#1306) 04 March 2020, 07:42:30 UTC
1c4bfb6 [Performance] Replace np.array with np.asarray (#1301) * replace np.array with np.asarray * fix Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 03 March 2020, 12:45:41 UTC
5dd3558 [Feature] Improve sampling speed; Better pickle/unpickle; other fixes (#1299) * improve performance of sample_neighbors * some more improve * test script * benchmarks * multi process * update more tests * WIP * adding two API for state saving * add create from state * upd test * missing file * wip: pickle/unpickle * more c apis * find the problem of empty data array * add null array; pickling speed is bad * still bad perf * still bad perf * wip * fix the pickle speed test; now everything looks good * minor fix * bugfix * some lint fix * address comments * more fix * fix lint * add utest for random.choice * add utest for dgl.rand_graph * fix cpp utests * try fix ci * fix bug in TF backend * upd choice docstring * address comments * upd * try fix compile * add comment 02 March 2020, 15:16:05 UTC
00ba409 [DGL-KE] Distributed training of DGL-KE (#1290) * update * change name * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * update * change worker number * update * update * update * update * update * update * test * update * update * update * remove barrier * max_step * update * add complex * update * chmod +x * update * update * random partition * random partition * update * update * update * update * update * update * update * update * update * update * update * change num_test_proc * update num_thread * update 02 March 2020, 06:17:54 UTC
c3a3340 [Feature] PinSAGE sampler (#1249) * [WIP] PinSAGE operators * moved the edge remapping mess into C * some docstrings * lint * lint x2 * lint x3 * skip gpu test on topk * extend pinsage to any metapath * lint x4 * addresses #1265 * add always_preserve (fixes #1266) and fix a silly bug * disable gpu test on compaction * lint * fix a horrible bug and add more tests * lint * addresses comments * lint * bugfix * addresses comments Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 28 February 2020, 12:46:13 UTC
87bca12 [CI] Regression Test Configuration (#1157) * push * 1111 * 111 * fix * 222 * 1231231 * 111 * 45458643465 * fix * fix * fix * 4156416 * fix * path * 111 * 1231 * 111 * 152554 * fix * fix * fix * fix * try fix * change name * try * fix * fix Co-authored-by: Minjie Wang <minjie.wang@nyu.edu> 28 February 2020, 06:43:32 UTC
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