https://github.com/biochem-fan/cheetah

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Revision Author Date Message Commit Date
3fca6ae Added reading of histograms and per-pixel threshold maps 25 June 2013, 18:03:38 UTC
d9842b0 Minor changes 15 June 2013, 15:03:40 UTC
c624466 hitfinder: Updates to process multiple streams in parallel (-c keyword); unfortunately -s was already taken! 14 June 2013, 12:04:12 UTC
6870e41 Speedup: Assemble 2D images only when really needed. 1) Sum powder patterns in raw data only; assemble once right before writing to file; 2) Assemble image only for frames that will be saved. 14 June 2013, 10:34:54 UTC
f6eedab Save full powder pattern along with gaincal and darkcal (useful to have the additional statistics, for example to identify bad pixels). 14 June 2013, 08:24:48 UTC
c5f017a Fiducial not being read meant files were overwriting each other, causing HDF5 library errors. Added a fix using frame number as the fiducial if not read from XTC. Could happen to the timestamp as well. 13 June 2013, 19:28:33 UTC
6417446 Added more traps for thread lockup - need to add a timeout wherever waiting for all threads to exit 12 June 2013, 21:35:11 UTC
e2ecb74 Merge branch 'testing' of github.com:antonbarty/cheetah into testing 11 June 2013, 07:54:09 UTC
9e261ee Added multiple-streams-in-parallel version of hitfinder 11 June 2013, 07:53:41 UTC
5a69c39 Speed testing changes 10 June 2013, 18:40:25 UTC
270e46e Added a bunch of speed tests to worker for performance profiling 07 June 2013, 12:30:11 UTC
0b21303 Testing 07 June 2013, 10:16:35 UTC
03bd0e5 Speed testing 07 June 2013, 10:15:21 UTC
52b92b6 Speed testing 07 June 2013, 10:14:10 UTC
955bccb Added another speed test 07 June 2013, 10:08:50 UTC
307d160 Thread management won't bomb output with too many messages 07 June 2013, 10:05:39 UTC
e0c051f Testing 07 June 2013, 09:20:36 UTC
264f944 Don't forget to free event data in speed tests 07 June 2013, 09:14:45 UTC
03bd5b5 Wrong error message 07 June 2013, 09:07:36 UTC
1438d1b Prevent thread lockup - if nothing happens for 2 minutes, keep going anyway 07 June 2013, 08:53:35 UTC
2254cb3 Bug fix 07 June 2013, 08:29:22 UTC
91660e0 Bug fix 07 June 2013, 08:26:14 UTC
05af9bb Housekeeping in psana interface 07 June 2013, 08:23:49 UTC
75d7cbf Fiddling around with cheetah_ana_mod to improve efficiency 06 June 2013, 13:32:53 UTC
4e74c71 Minor changes to the crawler (robustness, etc) 06 June 2013, 10:00:07 UTC
b40c998 Fixed adding to powder twice 02 June 2013, 16:56:19 UTC
c4aabb9 Some modificaitons to the IDL viewer/crawler stuff 31 May 2013, 22:25:46 UTC
b27d293 Updating 31 May 2013, 15:26:31 UTC
7c5f5ec Merge branch 'anton' into testing Conflicts: idl/crawler_autorun.pro idl/crawler_hdf5.pro 30 May 2013, 22:24:58 UTC
3bf693a Updated autorun 30 May 2013, 22:22:11 UTC
591f1e5 Updated hdf5 crawler 25 May 2013, 19:03:53 UTC
c5ae1f0 Updated crawler_hdf5 to take advantage of little status file now written out by Cheetah 24 May 2013, 14:36:08 UTC
5cf01ce Merge branch 'anton' into testing 24 May 2013, 13:30:43 UTC
0fcd306 Fixed comilation error 24 May 2013, 13:18:49 UTC
6c3fde5 Merge branch 'developer' into anton Conflicts: source/cheetah.xcodeproj/project.pbxproj source/cheetah.xcodeproj/project.xcworkspace/xcuserdata/barty.xcuserdatad/UserInterfaceState.xcuserstate source/libcheetah/src/libcheetah.cpp source/libcheetah/src/setup.cpp source/libcheetah/src/worker.cpp 24 May 2013, 13:11:28 UTC
a855a67 Turns out having a histogram buffer was faster after all 24 May 2013, 12:59:45 UTC
01c71c9 Added soft link from /data/histogram to /data/data 24 May 2013, 12:50:33 UTC
75a388f Made integration of energy spectrum optional (it takes some time) 24 May 2013, 12:32:23 UTC
62c83bc Added a periodic status file (for crawler) 24 May 2013, 12:09:11 UTC
b6c3874 Removed histogram buffer from histogram writing - seemed to be taking more time than it was worth 24 May 2013, 11:54:32 UTC
4da078c Fixes to histogram statistics 24 May 2013, 09:16:24 UTC
8035db1 Fixed normalisaiton 21 May 2013, 13:24:55 UTC
eceaa81 Fixed some typos 21 May 2013, 13:07:19 UTC
2602769 Added more statistical measures (from Duane) 21 May 2013, 13:04:36 UTC
c1bb6a9 Added extra information to histogram HDF5 file 21 May 2013, 11:29:50 UTC
8a4fa90 Commented out the spectrometer for speed 21 May 2013, 01:47:02 UTC
6b46a31 Need to add histogram.cpp to CMakeLists file 21 May 2013, 01:29:26 UTC
6672ea0 Remember to add to histograms 21 May 2013, 01:24:31 UTC
1469a75 Added pixel histogramming capability 20 May 2013, 23:57:00 UTC
bbd0d71 Updated Xcode project 20 May 2013, 21:58:21 UTC
7b5a808 Updated crawler 18 May 2013, 05:57:52 UTC
9b831c3 Added config file to crawler_view 18 May 2013, 01:39:53 UTC
a252cb2 Merge branch 'developer' of github.com:antonbarty/cheetah into developer 15 May 2013, 19:58:51 UTC
32317ef Merge branch 'testing' into developer Conflicts: source/cheetah.xcodeproj/project.xcworkspace/xcuserdata/barty.xcuserdatad/UserInterfaceState.xcuserstate 15 May 2013, 19:58:28 UTC
8569c4d Merge branch 'developer' of github.com:antonbarty/cheetah into developer 07 May 2013, 08:54:35 UTC
0c3bba9 added writing to new datasets in saveCXI 07 May 2013, 08:54:15 UTC
69cb2b0 expand peak memory (avoid potential seg. faults) 07 May 2013, 04:53:43 UTC
210aa9f remove redundant message in cheetah_ana_mod 07 May 2013, 03:41:14 UTC
f2c5864 Add peak separation filter to algorithm 3 07 May 2013, 01:43:50 UTC
01a6d9d small fixup 07 May 2013, 01:17:03 UTC
7c57490 Merge branch 'developer' of https://github.com/antonbarty/cheetah into developer 07 May 2013, 00:30:12 UTC
56b919f separate function for removing closely spaced peaks 07 May 2013, 00:30:06 UTC
c255f3b Added crystallographer and lithographer resolution rings 06 May 2013, 04:50:06 UTC
0a906ff Fixed up some inconsistencies in powder pattern creation 06 May 2013, 01:47:44 UTC
7c7ecba Added resolution rings to Cheetahview 06 May 2013, 01:34:38 UTC
19776f4 Updates 05 May 2013, 18:22:08 UTC
22145c9 Updates to cheetahview 05 May 2013, 18:20:39 UTC
83bfedc Added GUI control in form of some IDL scripts that crawl the output directories and compile data for an interactive table viewer 05 May 2013, 18:18:45 UTC
5cef309 make psana the default in hitfinder (myana optional) 04 May 2013, 23:47:23 UTC
ba5649e Removed pointless goto statement 04 May 2013, 05:45:52 UTC
cce2922 Tracking down segmentation fault - reported to be in destroyEvent() 03 May 2013, 18:57:44 UTC
94768a2 typo 03 May 2013, 07:29:52 UTC
75db08b Merge branch 'developer' of github.com:antonbarty/cheetah into developer 03 May 2013, 07:15:31 UTC
40b14ab change position in myana where CXI files are closed 03 May 2013, 07:14:32 UTC
7bb1864 Powder patterns need image assembly by default 03 May 2013, 04:27:52 UTC
087ebb7 Add to powder whilst background is subtracted. Ultimately we may want to make it an option whether to powder sum the background corrected or not background corrected data, but for now this is a quick hack 03 May 2013, 03:14:14 UTC
a4329a6 Updated install instructions to reflect new directory structure. 30 April 2013, 14:17:52 UTC
da740e4 Modified CMakeList.txt files to follow new structure. 30 April 2013, 13:54:56 UTC
32c3084 moved cmake build files back up to the top level as per convention 30 April 2013, 13:49:14 UTC
421fa51 Added missing geometry file 30 April 2013, 08:49:24 UTC
5d8e1f0 Use OPTION Command instead of SET A variable defined in an option command appears as a boolean choice in the CMake GUI or when running CMake interactively using cmake -i. 24 April 2013, 15:05:01 UTC
f305014 ignore build directory in git 24 April 2013, 15:04:12 UTC
f8c77aa Revert "moved cmake directory back up to the top level" This reverts commit 4aa06dcf90d320c96dccbff431bc5d87c8e36f24. 24 April 2013, 15:01:14 UTC
4aa06dc moved cmake directory back up to the top level cmake directory doesn't really belong in source as it is used during the build configuration. 24 April 2013, 14:13:42 UTC
530643b Merge branch 'developer' of github.com:antonbarty/cheetah into developer 24 April 2013, 11:22:59 UTC
1d76db3 cheetah configuration, event variables and powder stored to CXI file 24 April 2013, 11:22:23 UTC
7ad94fd Merge branch 'anton' into developer 22 April 2013, 14:01:35 UTC
ee33504 Peak finding is working again (please don't mess with peak masks!) 22 April 2013, 14:00:58 UTC
ed15e35 Problem located in definition of resolution mask (???) 22 April 2013, 13:56:07 UTC
a0d0d2c Still chasing peak finding failure 22 April 2013, 13:53:45 UTC
6bc3dd5 Still tracking down peak finding 22 April 2013, 13:46:37 UTC
19e9f57 Still chasing down cause of hitfinding failure 22 April 2013, 13:22:50 UTC
10dbc26 Chasing down failure in peak counting 22 April 2013, 13:00:48 UTC
4d203af Trying to revert a bug (no peaks found) 22 April 2013, 12:49:23 UTC
d034dad Updated hitrate, resolution to column format 22 April 2013, 07:24:26 UTC
ac46c59 Added hitrate and resolution scripts 21 April 2013, 21:24:11 UTC
5fc3510 Curr. hitrate printed with every processed event 21 April 2013, 19:02:14 UTC
1e18636 new simple processing script 21 April 2013, 17:35:47 UTC
ae40429 check for overflow during downsampling (2) 21 April 2013, 15:45:10 UTC
ae4c5c3 check for overflow during downsampling, clip in case. 21 April 2013, 15:33:59 UTC
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