| 91dca8c | Mihai Surdeanu | 25 August 2020, 19:35:01 UTC | Added export functionality with assembly | 25 August 2020, 19:35:01 UTC |
| e30b958 | Mihai Surdeanu | 25 August 2020, 17:53:58 UTC | Added arizona and cmu exporters | 25 August 2020, 17:53:58 UTC |
| f4e0eab | Mihai Surdeanu | 24 August 2020, 21:32:22 UTC | tests and conf | 24 August 2020, 21:32:22 UTC |
| 3f67e2b | Mihai Surdeanu | 24 August 2020, 21:22:31 UTC | README | 24 August 2020, 21:22:31 UTC |
| b29adc9 | Mihai Surdeanu | 24 August 2020, 21:14:15 UTC | CHANGES | 24 August 2020, 21:14:15 UTC |
| e6fe953 | Mihai Surdeanu | 24 August 2020, 21:11:36 UTC | Added the assembly subproject | 24 August 2020, 21:11:36 UTC |
| 15453e1 | Mihai Surdeanu | 24 August 2020, 21:10:42 UTC | build and ashell | 24 August 2020, 21:10:42 UTC |
| 2c02ec7 | Mihai Surdeanu | 30 June 2020, 20:37:30 UTC | Merge pull request #690 from clulab/master_polarity_sync_20200630 change processor version and fix synchronization | 30 June 2020, 20:37:30 UTC |
| cc8edb0 | Zhengzhong Liang | 30 June 2020, 19:05:15 UTC | change processor version and fix synchronization | 30 June 2020, 19:05:15 UTC |
| 04f3345 | Mihai Surdeanu | 24 June 2020, 14:12:29 UTC | Merge pull request #689 from clulab/master_polarity_sync_20200623 fix synchronization issue | 24 June 2020, 14:12:29 UTC |
| fef8db0 | Zhengzhong Liang | 24 June 2020, 05:01:00 UTC | fix synchronization issue | 24 June 2020, 05:01:00 UTC |
| 677da1e | Mihai Surdeanu | 26 May 2020, 20:14:27 UTC | Setting version to 1.6.1-SNAPSHOT | 26 May 2020, 20:14:27 UTC |
| ba0b206 | Mihai Surdeanu | 26 May 2020, 20:14:26 UTC | Setting version to 1.6.0 | 26 May 2020, 20:14:26 UTC |
| a90542b | Mihai Surdeanu | 26 May 2020, 20:07:41 UTC | CHANGES | 26 May 2020, 20:07:41 UTC |
| 6f8a7ae | Mihai Surdeanu | 26 May 2020, 20:05:29 UTC | Merge pull request #687 from clulab/master_crash_fix_20200512 Master crash fix 20200512 | 26 May 2020, 20:05:29 UTC |
| 7efd9c3 | Zhengzhong Liang | 26 May 2020, 17:55:18 UTC | fix code review request before merging | 26 May 2020, 17:55:18 UTC |
| 296607e | Zhengzhong Liang | 26 May 2020, 04:29:46 UTC | clear debugging code for merge | 26 May 2020, 04:29:46 UTC |
| 05fd542 | Zhengzhong Liang | 25 May 2020, 22:13:46 UTC | debug | 25 May 2020, 22:13:46 UTC |
| 3d815a0 | Zhengzhong Liang | 22 May 2020, 20:39:46 UTC | fix synchronization in more functions | 22 May 2020, 20:39:46 UTC |
| db9c225 | Zhengzhong Liang | 22 May 2020, 18:36:02 UTC | fix synchronize issue | 22 May 2020, 18:36:02 UTC |
| 4248b3b | Zhengzhong Liang | 21 May 2020, 18:49:30 UTC | change dynet memory size to 512 | 21 May 2020, 18:49:30 UTC |
| 4a5a27a | Zhengzhong Liang | 20 May 2020, 03:16:51 UTC | eliminiate thread limit for debugging for debugging | 20 May 2020, 03:16:51 UTC |
| ccb1270 | Zhengzhong Liang | 19 May 2020, 17:00:39 UTC | increase dynet size to 4096 | 19 May 2020, 17:00:39 UTC |
| e11a5eb | Zhengzhong Liang | 19 May 2020, 16:53:16 UTC | try to debug on the full corpus | 19 May 2020, 16:53:16 UTC |
| 7ca4fb6 | Zhengzhong Liang | 18 May 2020, 23:32:50 UTC | fix the dynet memory issue and test | 18 May 2020, 23:32:50 UTC |
| 727082d | Zhengzhong Liang | 18 May 2020, 23:22:28 UTC | fix the dynet memory issue and test | 18 May 2020, 23:22:28 UTC |
| 9e84581 | Zhengzhong Liang | 16 May 2020, 18:13:53 UTC | debug | 16 May 2020, 18:13:53 UTC |
| 554640f | Mihai Surdeanu | 07 May 2020, 15:53:18 UTC | Merge pull request #686 from clulab/mesh Integrate Disease entity type and grounding | 07 May 2020, 15:53:18 UTC |
| c379909 | Ben Gyori | 07 May 2020, 14:44:58 UTC | Change to released version of bioresources | 07 May 2020, 14:44:58 UTC |
| 6a695e9 | Ben Gyori | 07 May 2020, 03:01:00 UTC | Remove test added accidentally | 07 May 2020, 03:01:00 UTC |
| 4d7445b | Ben Gyori | 07 May 2020, 02:37:04 UTC | Add disease to entities.yml | 07 May 2020, 02:37:04 UTC |
| a39f7aa | Ben Gyori | 07 May 2020, 02:30:41 UTC | Some fixes in MeSH integration | 07 May 2020, 02:30:41 UTC |
| 15050d4 | Ben Gyori | 06 May 2020, 15:21:00 UTC | Integrate MeSH diseases | 06 May 2020, 15:36:42 UTC |
| aa4405a | Mihai Surdeanu | 30 April 2020, 14:45:02 UTC | Merge pull request #684 from clulab/conf_output Remove deprecated output formats from conf and export | 30 April 2020, 14:45:02 UTC |
| d60793a | Mihai Surdeanu | 30 April 2020, 03:17:27 UTC | Merge pull request #683 from clulab/conversion Conversion | 30 April 2020, 03:17:27 UTC |
| 12b8a19 | Ben Gyori | 30 April 2020, 03:12:36 UTC | Remove deprecated export formats from exports | 30 April 2020, 03:12:36 UTC |
| de41284 | Ben Gyori | 30 April 2020, 03:05:30 UTC | Remove deprecated output formats from config | 30 April 2020, 03:05:30 UTC |
| 72f2d20 | Ben Gyori | 30 April 2020, 02:08:14 UTC | Add one shared variable | 30 April 2020, 02:08:14 UTC |
| ba72f2b | Ben Gyori | 30 April 2020, 01:59:59 UTC | Merge some rules and change names | 30 April 2020, 01:59:59 UTC |
| 0fcfc69 | Ben Gyori | 30 April 2020, 01:33:30 UTC | Add two more trigger words | 30 April 2020, 01:33:30 UTC |
| 3739ade | Ben Gyori | 30 April 2020, 00:53:26 UTC | Relax controller requirement in rules | 30 April 2020, 00:53:26 UTC |
| d98a6f1 | Ben Gyori | 29 April 2020, 19:41:10 UTC | Handle Conversion in fries output | 29 April 2020, 19:41:10 UTC |
| 516e31e | Ben Gyori | 29 April 2020, 19:18:20 UTC | Fix arguments complete check for conversions | 29 April 2020, 19:18:20 UTC |
| c950bd9 | Ben Gyori | 29 April 2020, 00:16:19 UTC | Make required entities more strict | 29 April 2020, 00:16:19 UTC |
| 2936ff5 | Ben Gyori | 28 April 2020, 03:17:43 UTC | Update and generalize some more rules | 28 April 2020, 03:17:43 UTC |
| 227b3b7 | Ben Gyori | 28 April 2020, 02:50:31 UTC | Update two more rules and change all to BioChemicalEntity | 28 April 2020, 02:50:31 UTC |
| dcc3cbd | Ben Gyori | 28 April 2020, 02:38:31 UTC | Workaround to make extractions work | 28 April 2020, 02:38:31 UTC |
| ae979d3 | Ben Gyori | 28 April 2020, 02:38:16 UTC | Update one rule to new syntax | 28 April 2020, 02:38:16 UTC |
| 510fb35 | John Bachman | 27 April 2020, 20:17:34 UTC | Conversion tests | 28 April 2020, 02:17:59 UTC |
| 5af6242 | John Bachman | 26 May 2017, 17:56:41 UTC | More conversion rules | 28 April 2020, 02:17:58 UTC |
| ce456d4 | John Bachman | 25 May 2017, 22:21:21 UTC | Add conversion rule file | 28 April 2020, 02:17:58 UTC |
| 9e4534f | John Bachman | 25 May 2017, 20:58:08 UTC | Update taxonomy and events_master | 28 April 2020, 02:17:58 UTC |
| 3ebcb2e | Mihai Surdeanu | 25 April 2020, 19:34:40 UTC | Merge pull request #681 from clulab/master_cleaning_20200409 fix bug, now loading c2i and w2i as resources | 25 April 2020, 19:34:40 UTC |
| 835e8c5 | Zhengzhong Liang | 25 April 2020, 04:32:09 UTC | fix bug, now loading c2i w2i as resources | 25 April 2020, 04:32:09 UTC |
| cab16a1 | Mihai Surdeanu | 24 April 2020, 23:30:00 UTC | Merge pull request #679 from clulab/chebi Integrating ChEBI, GO and new stopwords from bioresources | 24 April 2020, 23:30:00 UTC |
| e7181c5 | Ben Gyori | 24 April 2020, 20:20:50 UTC | Use released bioresources 1.1.32 | 24 April 2020, 20:20:50 UTC |
| 6ee66d0 | Ben Gyori | 24 April 2020, 15:53:03 UTC | Change another test that now has more extractions | 24 April 2020, 16:20:47 UTC |
| 0182921 | Ben Gyori | 24 April 2020, 15:27:51 UTC | Make more test updates to adapt to GO changes | 24 April 2020, 15:27:51 UTC |
| ce187cf | Ben Gyori | 24 April 2020, 13:06:44 UTC | Start adapting tests with updated bio processes | 24 April 2020, 13:06:44 UTC |
| 1d97fe0 | Ben Gyori | 24 April 2020, 03:43:47 UTC | Fix more test cases that have changed grounding | 24 April 2020, 03:43:47 UTC |
| 749998c | Ben Gyori | 23 April 2020, 16:57:34 UTC | Update test and bioresources version | 23 April 2020, 16:57:34 UTC |
| 6509035 | Ben Gyori | 23 April 2020, 15:47:00 UTC | Fix source file for chebi | 23 April 2020, 15:49:53 UTC |
| 9c61273 | Ben Gyori | 23 April 2020, 15:32:25 UTC | Add ChEBI in one more place | 23 April 2020, 15:32:25 UTC |
| b72ce54 | Ben Gyori | 23 April 2020, 15:27:01 UTC | Add ChEBI to grounding | 23 April 2020, 15:27:01 UTC |
| 48814b8 | Benjamin M. Gyori | 17 April 2020, 17:03:29 UTC | Merge pull request #678 from clulab/docker_update Docker update | 17 April 2020, 17:03:29 UTC |
| ef2fe90 | Ben Gyori | 17 April 2020, 16:36:44 UTC | Fix workdir setting in test build | 17 April 2020, 16:36:44 UTC |
| 7a61eea | Ben Gyori | 17 April 2020, 16:33:57 UTC | Update Dockerfiles and README | 17 April 2020, 16:33:57 UTC |
| bafd4b8 | Ben Gyori | 17 April 2020, 15:39:20 UTC | Rename the base Dockerfile to dev | 17 April 2020, 15:39:20 UTC |
| e09f1e3 | Ben Gyori | 17 April 2020, 15:01:03 UTC | Update test docker after reorganization | 17 April 2020, 15:01:03 UTC |
| 17afaa2 | Benjamin M. Gyori | 16 April 2020, 04:25:39 UTC | Merge pull request #677 from clulab/timeouts Increase some timeouts for the API server | 16 April 2020, 04:25:39 UTC |
| 09a9507 | Benjamin M. Gyori | 16 April 2020, 04:21:32 UTC | Merge pull request #676 from clulab/fplx_fix Change deprecated be to fplx | 16 April 2020, 04:21:32 UTC |
| 750a3c2 | Ben Gyori | 16 April 2020, 03:45:00 UTC | Increase some timeouts for the api server | 16 April 2020, 03:45:00 UTC |
| 74bb888 | Ben Gyori | 16 April 2020, 03:28:13 UTC | Change deprecated be to fplx | 16 April 2020, 03:28:13 UTC |
| 8323ae6 | Mihai Surdeanu | 14 April 2020, 15:13:10 UTC | Merge pull request #675 from clulab/bio31 Bio31 | 14 April 2020, 15:13:10 UTC |
| 415b305 | Mihai Surdeanu | 14 April 2020, 03:00:57 UTC | CHANGES | 14 April 2020, 03:00:57 UTC |
| 60a832d | Mihai Surdeanu | 14 April 2020, 02:59:49 UTC | updated bioresources version | 14 April 2020, 02:59:49 UTC |
| c308eb9 | Ben Gyori | 13 April 2020, 21:19:21 UTC | Fix one more test with new priority order | 13 April 2020, 21:19:21 UTC |
| 9cb4c6b | Mihai Surdeanu | 13 April 2020, 00:04:23 UTC | removed FamilyOrComplex | 13 April 2020, 00:04:23 UTC |
| 2984bef | Mihai Surdeanu | 12 April 2020, 19:23:53 UTC | Add FamilyOrComplex to NER; prioritize FamPlex over other Family KBs | 12 April 2020, 19:23:53 UTC |
| 614bcaf | Ben Gyori | 12 April 2020, 17:58:23 UTC | Fix some more family groundings | 12 April 2020, 17:58:23 UTC |
| 1ef250a | Ben Gyori | 12 April 2020, 16:23:45 UTC | First round of test fixes | 12 April 2020, 16:23:45 UTC |
| 13bf2d6 | Ben Gyori | 12 April 2020, 14:59:42 UTC | Merge remote-tracking branch 'origin/master' into bio31 | 12 April 2020, 14:59:42 UTC |
| 7bc72e6 | Mihai Surdeanu | 11 April 2020, 23:52:35 UTC | Merge pull request #674 from clulab/master_cleaning_20200409 Master cleaning 20200409 | 11 April 2020, 23:52:35 UTC |
| c8f0cb5 | Zhengzhong Liang | 11 April 2020, 21:37:11 UTC | clean | 11 April 2020, 21:37:11 UTC |
| f95dc2d | Zhengzhong Liang | 11 April 2020, 20:33:53 UTC | added saved w2i and c2i | 11 April 2020, 20:33:53 UTC |
| fe3883c | Mihai Surdeanu | 11 April 2020, 20:02:31 UTC | This fails because it still depends on uncommitted changes in bioresources. | 11 April 2020, 20:02:31 UTC |
| f27fc8e | Mihai Surdeanu | 11 April 2020, 20:00:44 UTC | Adjusted unit tests for new bioresources | 11 April 2020, 20:00:44 UTC |
| 5062fa1 | Mihai Surdeanu | 11 April 2020, 16:03:35 UTC | Merge pull request #672 from clulab/kwalcock-gitattributes Add .gitattributes | 11 April 2020, 16:03:35 UTC |
| 20644ca | Mihai Surdeanu | 11 April 2020, 16:02:45 UTC | Merge pull request #673 from clulab/cross cross compile | 11 April 2020, 16:02:45 UTC |
| d158a2b | Marco Antonio Valenzuela Escárcega | 11 April 2020, 12:15:53 UTC | cross compile | 11 April 2020, 12:15:53 UTC |
| 7aa8edc | Keith Alcock | 11 April 2020, 05:49:04 UTC | Add .gitattributes | 11 April 2020, 06:10:06 UTC |
| 8bbd893 | Mihai Surdeanu | 10 April 2020, 03:08:59 UTC | Merge pull request #670 from clulab/kwalcock-fixOOM Restore comment explaining merge | 10 April 2020, 03:08:59 UTC |
| 6b45ec1 | Keith Alcock | 10 April 2020, 00:22:27 UTC | Restore comment explaining merge | 10 April 2020, 00:22:27 UTC |
| 8a85deb | Mihai Surdeanu | 10 April 2020, 00:21:22 UTC | Merge pull request #669 from clulab/kwalcock-fixOOM Enable assembly again | 10 April 2020, 00:21:22 UTC |
| 6375a58 | Keith Alcock | 10 April 2020, 00:06:59 UTC | Replace travis build badge with jenkins | 10 April 2020, 00:06:59 UTC |
| 69d6648 | Keith Alcock | 09 April 2020, 20:28:37 UTC | Handle the merge conflict | 09 April 2020, 20:28:37 UTC |
| b5f0c72 | Keith Alcock | 09 April 2020, 19:54:17 UTC | Update assembly plugin | 09 April 2020, 19:54:17 UTC |
| a02c74c | Mihai Surdeanu | 08 April 2020, 16:40:06 UTC | Merge pull request #667 from clulab/assembly-rip Infanticide | 08 April 2020, 16:40:06 UTC |
| da5f44a | Gus Hahn-Powell | 08 April 2020, 05:04:13 UTC | Removed stale arg | 08 April 2020, 05:04:13 UTC |
| 9544374 | Gus Hahn-Powell | 08 April 2020, 04:48:52 UTC | Merge branch 'master' into assembly-rip | 08 April 2020, 04:48:52 UTC |
