| ef57fe3 | Enrique Noriega | 07 April 2021, 23:18:57 UTC | Updated the instructions | 07 April 2021, 23:18:57 UTC |
| 5883efa | Enrique Noriega | 07 April 2021, 22:29:43 UTC | Created an SBT task (generateKBs) to update the NER files from the KB files. This task supersedes the shell scripts that had to be run outside of SBT for the same purpose | 07 April 2021, 22:29:43 UTC |
| ee4069b | Enrique Noriega | 07 April 2021, 20:42:07 UTC | Merge pull request #745 from clulab/bioresources Fixed the tests | 07 April 2021, 20:42:07 UTC |
| 12e8c18 | Enrique Noriega | 06 April 2021, 19:39:50 UTC | Fixed the tests | 06 April 2021, 19:39:50 UTC |
| cf38772 | Enrique Noriega | 06 April 2021, 16:38:20 UTC | Merge pull request #744 from clulab/bioresources Uncompressed bioresources kb files | 06 April 2021, 16:38:20 UTC |
| 90f358d | Ben Gyori | 06 April 2021, 16:04:29 UTC | Remove gzipping from update scripts | 06 April 2021, 16:04:29 UTC |
| 1a45d40 | Enrique Noriega | 06 April 2021, 15:56:21 UTC | Uncompressed bioresources kb files | 06 April 2021, 15:56:21 UTC |
| c404a87 | Keith Alcock | 17 February 2021, 00:06:57 UTC | Merge pull request #741 from clulab/kwalcock/testHeadlessDep Add test related to headless dependencies | 17 February 2021, 00:06:57 UTC |
| 26a8d47 | Keith Alcock | 16 February 2021, 23:13:47 UTC | Add test related to headless dependencies | 16 February 2021, 23:13:47 UTC |
| 543d937 | Keith Alcock | 16 February 2021, 22:42:06 UTC | Merge pull request #740 from clulab/kwalcock/updateProcessors Update processors | 16 February 2021, 22:42:06 UTC |
| 783fd34 | Keith Alcock | 16 February 2021, 20:13:06 UTC | Update processors | 16 February 2021, 20:13:06 UTC |
| ee84553 | Enrique Noriega | 09 February 2021, 18:36:25 UTC | Merge pull request #739 from clulab/context_module Context Module | 09 February 2021, 18:36:25 UTC |
| 30cd0da | Keith Alcock | 09 February 2021, 07:32:07 UTC | Merge pull request #727 from clulab/kwalcock-menu Use menu components from processors | 09 February 2021, 07:32:07 UTC |
| 04a4d27 | Keith Alcock | 09 February 2021, 06:33:21 UTC | Update for processors | 09 February 2021, 06:33:21 UTC |
| b9a13d4 | Keith Alcock | 09 February 2021, 04:41:50 UTC | Merge branch 'master' into kwalcock-menu | 09 February 2021, 04:41:50 UTC |
| e0781b2 | Keith Alcock | 09 February 2021, 04:39:58 UTC | Update changes | 09 February 2021, 04:39:58 UTC |
| 8585aab | Keith Alcock | 09 February 2021, 04:37:32 UTC | Merge pull request #738 from clulab/kwalcock-unionType Be more explicit with union type | 09 February 2021, 04:37:32 UTC |
| 01292d8 | Keith Alcock | 09 February 2021, 04:34:10 UTC | Update version of processors | 09 February 2021, 04:34:10 UTC |
| 730e020 | Keith Alcock | 09 February 2021, 04:30:28 UTC | Fix compilation problem | 09 February 2021, 04:30:28 UTC |
| 7773b67 | Enrique Noriega | 09 February 2021, 01:10:38 UTC | Added the files for feature extraction and the scafolding code to train the svm classifier and the skeleton of the SVM context engine | 09 February 2021, 01:10:38 UTC |
| e18eee3 | Keith Alcock | 01 February 2021, 23:56:51 UTC | Be more explicit with union type Also remove a debug println | 01 February 2021, 23:56:51 UTC |
| 3e632c5 | Enrique Noriega | 27 January 2021, 21:05:43 UTC | Merge pull request #737 from clulab/readme-patch Update README.md | 27 January 2021, 21:05:43 UTC |
| 3dfbdbc | Enrique Noriega | 27 January 2021, 18:59:18 UTC | Update README.md Declared support for Java 11 | 27 January 2021, 18:59:18 UTC |
| aab9eb8 | Keith Alcock | 27 January 2021, 17:50:27 UTC | Merge pull request #724 from clulab/kwalcock-indexCard Catch errors | 27 January 2021, 17:50:27 UTC |
| d410442 | Keith Alcock | 26 January 2021, 04:31:02 UTC | Ignore the long test | 26 January 2021, 04:31:02 UTC |
| 26ee8b9 | Keith Alcock | 26 January 2021, 03:35:13 UTC | Fix InvocationTargetException Rearrange tests Organize test files Bring over clean version Remove temporary files | 26 January 2021, 03:35:53 UTC |
| eb4ea0d | Keith Alcock | 22 January 2021, 18:21:21 UTC | Fix hyphenation when some of entries are missing | 26 January 2021, 03:35:53 UTC |
| b002fe9 | Keith Alcock | 22 January 2021, 16:08:49 UTC | Revise participants in IndexCardOutput Move inner class to the top | 26 January 2021, 03:35:53 UTC |
| 5f524f1 | Keith Alcock | 22 January 2021, 19:45:47 UTC | Merge pull request #735 from clulab/bioresources Removed bioresources' CHANGES.md and updated reach's CHANGES.md | 22 January 2021, 19:45:47 UTC |
| fc90830 | Keith Alcock | 22 January 2021, 18:05:25 UTC | Update CHANGES.md | 22 January 2021, 18:05:25 UTC |
| 62ab718 | Enrique Noriega | 22 January 2021, 17:49:36 UTC | Removed bioresources' CHANGES.md and updated reach's CHANGES.md | 22 January 2021, 17:49:36 UTC |
| 04a3f6f | Keith Alcock | 22 January 2021, 17:03:36 UTC | Merge pull request #734 from clulab/bioresources Bioresources | 22 January 2021, 17:03:36 UTC |
| adf3bdc | Keith Alcock | 22 January 2021, 02:42:36 UTC | Merge pull request #733 from clulab/kwalcock-uazId Fix some problems with assembly output and UAZ IDs | 22 January 2021, 02:42:36 UTC |
| cedfc45 | Keith Alcock | 22 January 2021, 02:38:22 UTC | Fix mkArgument | 22 January 2021, 02:38:22 UTC |
| fde0685 | Enrique Noriega | 21 January 2021, 21:44:50 UTC | Updated the shell scripts to process the KBs. Removed the version.sbt file, we no longer need it as bioresources is a subproject of reach | 21 January 2021, 21:44:50 UTC |
| 46d0168 | Enrique Noriega | 21 January 2021, 21:14:21 UTC | Ported bioresources directly into reach | 21 January 2021, 21:14:21 UTC |
| 2e1420b | Keith Alcock | 21 January 2021, 19:52:27 UTC | Add synchronization to ID generation | 21 January 2021, 19:53:11 UTC |
| 3214de1 | Keith Alcock | 21 January 2021, 18:12:52 UTC | Make IDs based on content | 21 January 2021, 19:53:11 UTC |
| 10b97e7 | Keith Alcock | 17 January 2021, 05:57:08 UTC | Pick EER group representative consistently Make sure IncrementingCounter is threadsafe | 21 January 2021, 16:44:31 UTC |
| 399fc87 | Keith Alcock | 21 January 2021, 16:38:02 UTC | Perform deduplication in repeatable way | 21 January 2021, 16:38:02 UTC |
| e5b6503 | Keith Alcock | 21 January 2021, 03:13:00 UTC | Cache to change machines | 21 January 2021, 03:13:00 UTC |
| 6bb1278 | Keith Alcock | 20 January 2021, 23:28:58 UTC | Patch fries format | 20 January 2021, 23:28:58 UTC |
| 1e25b49 | Keith Alcock | 20 January 2021, 20:55:24 UTC | Patch cmu format | 20 January 2021, 20:55:24 UTC |
| f7b67bd | Keith Alcock | 20 January 2021, 19:36:16 UTC | Start streamlining | 20 January 2021, 19:36:16 UTC |
| d3cb84b | Keith Alcock | 20 January 2021, 17:51:57 UTC | Improve tests | 20 January 2021, 17:51:57 UTC |
| 8a6ed30 | Keith Alcock | 20 January 2021, 16:39:12 UTC | Start testing crashes | 20 January 2021, 16:39:12 UTC |
| ac08083 | Keith Alcock | 20 January 2021, 01:22:28 UTC | Merge pull request #728 from clulab/hgnc_up Remove references to separate HGNC resource | 20 January 2021, 01:22:28 UTC |
| 1fb4e80 | Keith Alcock | 19 January 2021, 22:52:26 UTC | Increment bioresources | 19 January 2021, 22:52:26 UTC |
| 7c18f07 | Keith Alcock | 19 January 2021, 20:25:54 UTC | Merge branch 'master' into hgnc_up | 19 January 2021, 20:25:54 UTC |
| 251d9d7 | Keith Alcock | 19 January 2021, 19:53:46 UTC | Merge pull request #726 from clulab/issue722 Integrate fix to #722 into master | 19 January 2021, 19:53:46 UTC |
| 9491da3 | Keith Alcock | 19 January 2021, 18:12:30 UTC | Bump bioresources to 1.1.37 | 19 January 2021, 18:12:30 UTC |
| 769a544 | Ben Gyori | 19 January 2021, 15:41:05 UTC | Remove references to separate HGNC resource | 19 January 2021, 15:41:05 UTC |
| 913172d | Ben Gyori | 19 January 2021, 03:03:09 UTC | Update tests to match resources | 19 January 2021, 03:03:09 UTC |
| f298e08 | Keith Alcock | 18 January 2021, 17:55:56 UTC | Add comment about disappearing input | 18 January 2021, 17:55:56 UTC |
| 741b184 | Keith Alcock | 18 January 2021, 17:30:32 UTC | Reuse Menu from processors for ReachShell | 18 January 2021, 17:30:32 UTC |
| 2be6afa | Enrique Noriega | 18 January 2021, 17:19:44 UTC | This commit fixes issue #722 | 18 January 2021, 17:19:44 UTC |
| d9be114 | Keith Alcock | 17 January 2021, 05:57:08 UTC | Pick EER group representative consistently Make sure IncrementingCounter is threadsafe | 17 January 2021, 05:57:08 UTC |
| 7654523 | Keith Alcock | 17 January 2021, 04:42:41 UTC | Add documentation about exceptions | 17 January 2021, 04:42:41 UTC |
| d13c037 | Keith Alcock | 15 January 2021, 20:34:52 UTC | Perform deduplication in repeatable way | 15 January 2021, 20:34:52 UTC |
| 015c47f | Keith Alcock | 15 January 2021, 17:04:29 UTC | Improve error handling | 15 January 2021, 17:04:29 UTC |
| 62748a4 | Keith Alcock | 14 January 2021, 22:54:36 UTC | Comment on exceptions Streamline code | 14 January 2021, 22:54:36 UTC |
| 5c4b606 | Keith Alcock | 14 January 2021, 21:32:35 UTC | Catch errors Don't allow error in one format to block other formats | 14 January 2021, 21:32:35 UTC |
| e8537b0 | Keith Alcock | 09 January 2021, 03:14:06 UTC | Bump to see if badge will change | 09 January 2021, 03:14:06 UTC |
| 7143c49 | Keith Alcock | 09 January 2021, 00:28:17 UTC | Update README.md | 09 January 2021, 00:28:17 UTC |
| 4a2abaa | Keith Alcock | 08 January 2021, 23:47:32 UTC | Setting version to 1.6.3-SNAPSHOT | 08 January 2021, 23:47:32 UTC |
| 10fe8e4 | Keith Alcock | 08 January 2021, 23:39:30 UTC | Setting version to 1.6.2 | 08 January 2021, 23:39:30 UTC |
| a08fb3c | Keith Alcock | 08 January 2021, 23:29:42 UTC | Merge pull request #720 from clulab/kwalcock-fixes Add tests and documentation | 08 January 2021, 23:29:42 UTC |
| d2cb7d4 | Keith Alcock | 08 January 2021, 20:04:51 UTC | Update dependencies | 08 January 2021, 20:04:51 UTC |
| 3ed15f7 | Keith Alcock | 08 January 2021, 17:58:23 UTC | Remove unreachable code | 08 January 2021, 17:58:23 UTC |
| 043f5d0 | Keith Alcock | 07 January 2021, 17:41:02 UTC | Merge branch 'master' into kwalcock-fixes | 07 January 2021, 17:41:02 UTC |
| 3ffcd05 | Keith Alcock | 07 January 2021, 17:33:14 UTC | Update change log | 07 January 2021, 17:33:14 UTC |
| df74fe4 | Keith Alcock | 07 January 2021, 17:25:49 UTC | Document output formats in application.conf | 07 January 2021, 17:25:49 UTC |
| aeb675f | Keith Alcock | 07 January 2021, 17:18:10 UTC | Test Java serialization of Modifications | 07 January 2021, 17:18:10 UTC |
| ac32d38 | Keith Alcock | 07 January 2021, 17:17:03 UTC | Test new Modifications in rudimentary way | 07 January 2021, 17:17:03 UTC |
| 68f289b | Keith Alcock | 07 January 2021, 04:42:54 UTC | Fix some problems in reach (#719) * Change $HOME to ${user.home} for compatibility * Check Seq bounds more reliably * Stick with processor's version of json4s * Account for new Modification types in json serialization * Share some Modification code to reduce redundancy * Deserialize new Modifications Account for serialization in other places * Reuse code for other Modification formats * Sort text output consistently | 07 January 2021, 04:42:54 UTC |
| b20cd77 | Keith Alcock | 07 January 2021, 01:10:53 UTC | Sort text output consistently | 07 January 2021, 01:10:53 UTC |
| 3a07ff3 | Keith Alcock | 07 January 2021, 00:02:42 UTC | Reuse code for other Modification formats | 07 January 2021, 00:02:42 UTC |
| 87925f2 | Keith Alcock | 06 January 2021, 22:49:01 UTC | Deserialize new Modifications Account for serialization in other places | 06 January 2021, 22:49:01 UTC |
| 0380b72 | Keith Alcock | 06 January 2021, 22:27:06 UTC | Share some Modification code to reduce redundancy | 06 January 2021, 22:27:06 UTC |
| 15c0c83 | Keith Alcock | 06 January 2021, 21:06:26 UTC | Account for new Modification types in json serialization | 06 January 2021, 21:06:26 UTC |
| 65fd86a | Keith Alcock | 06 January 2021, 03:51:29 UTC | Stick with processor's version of json4s | 06 January 2021, 03:51:29 UTC |
| ab21b8e | Keith Alcock | 06 January 2021, 00:59:40 UTC | Check Seq bounds more reliably | 06 January 2021, 00:59:40 UTC |
| 859cafe | Keith Alcock | 05 January 2021, 01:38:25 UTC | Change $HOME to ${user.home} for compatibility | 05 January 2021, 01:38:25 UTC |
| 6bcc1b5 | Mihai Surdeanu | 29 December 2020, 21:13:43 UTC | Merge pull request #691 from clulab/myedibleenso/assembly assembly reassembled | 29 December 2020, 21:13:43 UTC |
| 3f16df1 | Mihai Surdeanu | 29 December 2020, 19:28:49 UTC | CHANGES | 29 December 2020, 19:28:49 UTC |
| 9847696 | Mihai Surdeanu | 29 December 2020, 19:28:05 UTC | things finally compile | 29 December 2020, 19:28:05 UTC |
| 76ed256 | Mihai Surdeanu | 29 December 2020, 14:48:41 UTC | adding missing outputters | 29 December 2020, 14:48:41 UTC |
| 49a8c72 | Mihai Surdeanu | 29 December 2020, 13:42:38 UTC | fixed wrietJSON | 29 December 2020, 13:42:38 UTC |
| 7330996 | Mihai Surdeanu | 29 December 2020, 02:45:15 UTC | correct scalatest version. Re-enabled AssemblySieve(precedence.intersententialRBPrecedence) in Assembler. | 29 December 2020, 02:45:15 UTC |
| cdc62c2 | Mihai Surdeanu | 28 December 2020, 17:25:42 UTC | removed last two assembly sieves | 28 December 2020, 17:25:42 UTC |
| 81b7292 | Mihai Surdeanu | 28 December 2020, 16:34:52 UTC | Merge branch 'master' into myedibleenso/assembly | 28 December 2020, 16:34:52 UTC |
| 17e2b72 | Keith Alcock | 20 October 2020, 15:01:07 UTC | Merge pull request #711 from clulab/kwalcock-progressive Uncomment some of release process | 20 October 2020, 15:01:07 UTC |
| 4dc6a85 | Keith Alcock | 20 October 2020, 05:58:04 UTC | Uncomment some of release process | 20 October 2020, 05:58:04 UTC |
| cf33902 | Keith Alcock | 20 October 2020, 05:30:03 UTC | Setting version to 1.6.2-SNAPSHOT | 20 October 2020, 05:30:03 UTC |
| adf7f5c | Keith Alcock | 20 October 2020, 05:25:16 UTC | Setting version to 1.6.1 | 20 October 2020, 05:25:16 UTC |
| 755fdcb | Keith Alcock | 20 October 2020, 05:15:21 UTC | Merge pull request #710 from clulab/kwalcock-rerelease Update release process | 20 October 2020, 05:15:21 UTC |
| 2016e49 | Keith Alcock | 20 October 2020, 03:54:15 UTC | Update release process | 20 October 2020, 03:54:15 UTC |
| e92943b | Keith Alcock | 19 October 2020, 23:56:52 UTC | Setting version to 1.6.2-SNAPSHOT | 19 October 2020, 23:56:52 UTC |
| f6b2a20 | Keith Alcock | 19 October 2020, 23:56:52 UTC | Setting version to 1.6.1 | 19 October 2020, 23:56:52 UTC |
| 695eb56 | Keith Alcock | 19 October 2020, 23:50:06 UTC | Merge pull request #708 from clulab/kwalcock-noSkip161 Don't skip version 1.6.1 | 19 October 2020, 23:50:06 UTC |
