| d4026fa | Mark T. Holder | 09 June 2014, 18:12:35 UTC | untested branch push | 09 June 2014, 18:12:35 UTC |
| 2facf54 | Mark T. Holder | 06 June 2014, 23:12:50 UTC | bug fix:last peyotl push changed convert arg. | 06 June 2014, 23:12:50 UTC |
| 2232675 | Mark T. Holder | 06 June 2014, 22:10:32 UTC | bug fix new conversion needs repo_nexml2json | 06 June 2014, 22:10:32 UTC |
| 990e1b9 | Mark T. Holder | 06 June 2014, 01:52:14 UTC | Merge pull request #92 from OpenTreeOfLife/treesource Treesource | 06 June 2014, 01:52:14 UTC |
| 6b7a861 | Mark T. Holder | 06 June 2014, 01:02:51 UTC | Merge branch 'master' of github.com:OpenTreeOfLife/phylesystem-api into treesource | 06 June 2014, 01:02:51 UTC |
| d12b85b | Mark T. Holder | 06 June 2014, 00:58:55 UTC | indentation | 06 June 2014, 00:58:55 UTC |
| ec30ccd | Mark T. Holder | 05 June 2014, 22:29:05 UTC | Merge pull request #91 from OpenTreeOfLife/prod-setup Tweak URLs for repo to match current name | 05 June 2014, 22:29:05 UTC |
| 726f119 | Jonathan A Rees | 05 June 2014, 21:04:13 UTC | Tweak URLs for repo to match current name | 05 June 2014, 21:04:13 UTC |
| 6b6c0db | Mark T. Holder | 05 June 2014, 18:52:06 UTC | Merge branch 'master' into treesource | 05 June 2014, 18:52:06 UTC |
| 1392ca6 | Jonathan A Rees | 05 June 2014, 12:40:58 UTC | Deal with URLs and branding Change 'dev' to 'api' in URLs (since 'dev' doesn't work; 'api' works for reading but is not being updated) and change 'API' to 'Phylesystem API' in running text to emphasize that this is only one component of the larger open tree suite. | 05 June 2014, 12:40:58 UTC |
| 3410837 | Mark T. Holder | 05 June 2014, 05:57:30 UTC | documenting new fine-grained access via GET | 05 June 2014, 05:57:30 UTC |
| d9ee768 | Mark T. Holder | 05 June 2014, 05:57:11 UTC | ignoring .json suffix | 05 June 2014, 05:57:11 UTC |
| 83ff1ad | Mark T. Holder | 05 June 2014, 05:18:46 UTC | subtree and otu-related slicing of studies | 05 June 2014, 05:18:46 UTC |
| 6cf5a66 | Mark T. Holder | 04 June 2014, 20:52:04 UTC | not passing content_id for study | 04 June 2014, 20:52:04 UTC |
| aff7b39 | Mark T. Holder | 04 June 2014, 20:05:24 UTC | merged manually | 04 June 2014, 20:05:24 UTC |
| 8d7fd57 | Mark T. Holder | 04 June 2014, 19:08:29 UTC | bug fix: bogus import in last commit | 04 June 2014, 19:08:29 UTC |
| 9623efd | Mark T. Holder | 04 June 2014, 19:01:39 UTC | updated README | 04 June 2014, 19:01:39 UTC |
| c3cfcb4 | Mark T. Holder | 04 June 2014, 17:38:15 UTC | Consolidating nexml import This change only corrects code that is commented out. But if we ever uncomment it, this should fix (the phylesystem-api part of): https://github.com/OpenTreeOfLife/phylesystem-api/issues/86 Untested commit. | 04 June 2014, 17:38:15 UTC |
| 15e1854 | Mark T. Holder | 03 June 2014, 22:45:26 UTC | getting the file extension for output sniffing request.extension | 03 June 2014, 22:45:26 UTC |
| c966905 | Mark T. Holder | 03 June 2014, 20:57:36 UTC | file extension in content negotiation Using the PhyloSchema format specifier in peyotl to make it easier to extend. | 03 June 2014, 20:57:36 UTC |
| 1c79ffb | Mark T. Holder | 02 June 2014, 22:50:13 UTC | GET .../study/ID/tree/ID syntax | 02 June 2014, 22:50:13 UTC |
| edc4c68 | Mark T. Holder | 31 May 2014, 03:52:42 UTC | typo in var name fixed | 31 May 2014, 03:52:42 UTC |
| 2866523 | Mark T. Holder | 31 May 2014, 03:47:07 UTC | newick and nexus export of trees | 31 May 2014, 03:47:07 UTC |
| aed3e4b | Mark T. Holder | 27 May 2014, 18:38:05 UTC | minor whitespace and doc fix | 27 May 2014, 18:38:05 UTC |
| c70e6bd | Mark T. Holder | 22 May 2014, 14:15:22 UTC | terser bullet points | 22 May 2014, 14:15:22 UTC |
| 7a411a9 | Mark T. Holder | 22 May 2014, 09:27:32 UTC | correct screenshot + tweaks | 22 May 2014, 09:27:32 UTC |
| 3ef0e8e | Mark T. Holder | 22 May 2014, 09:22:18 UTC | images from new curator | 22 May 2014, 09:22:18 UTC |
| dab1773 | Mark T. Holder | 22 May 2014, 09:08:05 UTC | tweaks | 22 May 2014, 09:08:05 UTC |
| 5684677 | Mark T. Holder | 20 May 2014, 21:09:39 UTC | disabling the gate on invalid studies making it into the corpus | 20 May 2014, 21:09:39 UTC |
| 9fb8980 | Mark T. Holder | 20 May 2014, 12:15:59 UTC | initial draft | 20 May 2014, 12:15:59 UTC |
| 3aca709 | Mark T. Holder | 19 May 2014, 20:08:01 UTC | recap of 2013 arch | 19 May 2014, 20:08:01 UTC |
| ba967a4 | Mark T. Holder | 19 May 2014, 19:42:10 UTC | Merge branch 'master' of github.com:OpenTreeOfLife/api.opentreeoflife.org | 19 May 2014, 19:42:10 UTC |
| 03ad274 | Mark T. Holder | 19 May 2014, 19:41:59 UTC | more slides | 19 May 2014, 19:41:59 UTC |
| 3e26ebe | Jim Allman | 19 May 2014, 16:41:04 UTC | Merge pull request #88 from OpenTreeOfLife/streamlined-study-creation Match UI in same-named branch | 19 May 2014, 16:41:04 UTC |
| df0ab54 | Jim Allman | 19 May 2014, 16:37:13 UTC | Match UI in same-named branch | 19 May 2014, 16:37:13 UTC |
| 0480953 | Mark T. Holder | 19 May 2014, 16:36:34 UTC | hiding bookmarks bar | 19 May 2014, 16:36:34 UTC |
| eb8ed4e | Mark T. Holder | 19 May 2014, 13:54:23 UTC | pg screenshots | 19 May 2014, 13:54:23 UTC |
| 7c11a8e | Mark T. Holder | 19 May 2014, 12:52:02 UTC | beginnings of a software presentation slides for May DC meeting | 19 May 2014, 12:52:02 UTC |
| 61be2ae | Mark T. Holder | 09 May 2014, 01:20:01 UTC | minor: more verbose test | 09 May 2014, 01:20:01 UTC |
| d37e5ca | Mark T. Holder | 06 May 2014, 04:12:38 UTC | allowing specification of ID in POST - not tested | 06 May 2014, 04:12:38 UTC |
| d74c699 | Jim Allman | 05 May 2014, 04:00:56 UTC | Merge pull request #84 from OpenTreeOfLife/modified-study-creation Modified study creation | 05 May 2014, 04:00:56 UTC |
| 0c992e0 | Jim Allman | 05 May 2014, 03:58:36 UTC | Merge branch 'master' into modified-study-creation | 05 May 2014, 03:58:36 UTC |
| 16d2eb1 | Mark T. Holder | 05 May 2014, 03:52:07 UTC | whitespace only to trigger travis | 05 May 2014, 03:52:07 UTC |
| a559c04 | Mark T. Holder | 05 May 2014, 03:50:04 UTC | whitespace only to trigger travis | 05 May 2014, 03:50:04 UTC |
| 0850dde | Jim Allman | 05 May 2014, 03:29:15 UTC | Merge branch 'master' into modified-study-creation | 05 May 2014, 03:29:15 UTC |
| 43cf068 | Jim Allman | 05 May 2014, 02:13:29 UTC | Add cc0 waiver if needed, for all import methods. | 05 May 2014, 02:13:29 UTC |
| 3baacbe | Jim Allman | 04 May 2014, 20:22:24 UTC | Fix (misnamed arg) for importing from NeXML URL | 04 May 2014, 20:22:24 UTC |
| b993efc | Mark T. Holder | 04 May 2014, 19:34:42 UTC | tests fixed | 04 May 2014, 19:34:42 UTC |
| 8362d16 | Mark T. Holder | 04 May 2014, 19:04:19 UTC | phylesystem_config controller and tests that work with hbf_phylesystem_test | 04 May 2014, 19:04:19 UTC |
| bd7e887 | Jim Allman | 04 May 2014, 02:58:48 UTC | Match new client-side logic for study creation. | 04 May 2014, 02:58:48 UTC |
| d38f846 | Mark T. Holder | 03 May 2014, 04:03:42 UTC | logging PUT errors | 03 May 2014, 04:03:42 UTC |
| d53f7cf | Mark T. Holder | 03 May 2014, 00:51:09 UTC | bugfix in debug message | 03 May 2014, 00:51:09 UTC |
| 75a417b | Mark T. Holder | 03 May 2014, 00:40:18 UTC | debug log of PUT | 03 May 2014, 00:40:18 UTC |
| 10057c3 | Mark T. Holder | 02 May 2014, 17:37:10 UTC | trying to keep logger from stuttering | 02 May 2014, 17:37:10 UTC |
| 6f5dcc6 | Mark T. Holder | 02 May 2014, 17:31:13 UTC | newline at file end | 02 May 2014, 17:31:13 UTC |
| a22bfb7 | Mark T. Holder | 02 May 2014, 17:27:25 UTC | Allowing empty logging config strings Plus added logging variables to config.example to allow deploy-specific settings. | 02 May 2014, 17:27:25 UTC |
| 2ce967e | Mark T. Holder | 02 May 2014, 17:19:25 UTC | Refactor to get logging from conf rather than env Sounds simple, right? Think again web2py obnoxious system of getting the config from the request object makes this a brittle, inefficient pain. | 02 May 2014, 17:19:25 UTC |
| 8292819 | Mark T. Holder | 02 May 2014, 16:31:43 UTC | debugging lack of env | 02 May 2014, 16:31:43 UTC |
| 7dc302e | Mark T. Holder | 02 May 2014, 16:19:15 UTC | logging GET in default controller | 02 May 2014, 16:19:15 UTC |
| 4f59dfd | Mark T. Holder | 02 May 2014, 16:03:07 UTC | partially rolled-back the last change to add_or_update_webhooks.py | 02 May 2014, 16:03:07 UTC |
| bc20003 | Mark T. Holder | 02 May 2014, 15:22:46 UTC | adding log file paths to env-sensitivity | 02 May 2014, 15:22:46 UTC |
| 3019420 | Mark T. Holder | 02 May 2014, 03:00:06 UTC | catching exeption from string hook | 02 May 2014, 03:00:06 UTC |
| 2179a02 | Mark T. Holder | 02 May 2014, 02:44:07 UTC | bug fix in bad study ID GET | 02 May 2014, 02:44:07 UTC |
| 7661c55 | Jim Allman | 25 April 2014, 04:56:48 UTC | Merge pull request #83 from OpenTreeOfLife/get-version-history Get version history (also includes celery and webhooks) | 25 April 2014, 04:56:48 UTC |
| 2bc9b72 | Jim Allman | 25 April 2014, 04:50:20 UTC | Merge branch 'master' into get-version-history | 25 April 2014, 04:50:20 UTC |
| 6b1695c | Jim Allman | 20 April 2014, 05:02:02 UTC | Carry commit msg from curator when saving a study. | 20 April 2014, 05:02:02 UTC |
| f98e110 | Jim Allman | 19 April 2014, 04:26:21 UTC | error messages | 19 April 2014, 04:26:21 UTC |
| 01eb9fd | Jim Allman | 19 April 2014, 04:18:37 UTC | typo | 19 April 2014, 04:18:37 UTC |
| becd2a8 | Jim Allman | 19 April 2014, 04:14:07 UTC | More failure messages | 19 April 2014, 04:14:07 UTC |
| 3d17de6 | Jim Allman | 19 April 2014, 04:04:47 UTC | Add version-history to NexSON "wrapper" in API GET | 19 April 2014, 04:04:47 UTC |
| 11db0e4 | Jim Allman | 09 April 2014, 03:34:26 UTC | Relaxing CC0 requirement when adding new studies. | 09 April 2014, 03:34:26 UTC |
| 352fedd | Jim Allman | 08 April 2014, 23:28:47 UTC | typo | 08 April 2014, 23:28:47 UTC |
| b70ac6b | Jim Allman | 08 April 2014, 23:26:27 UTC | Graceful degration to manual webhooks. | 08 April 2014, 23:26:27 UTC |
| 162f929 | Jim Allman | 08 April 2014, 23:20:24 UTC | Test code | 08 April 2014, 23:20:24 UTC |
| b4bdfa3 | Jim Allman | 08 April 2014, 23:17:57 UTC | Script cleanup | 08 April 2014, 23:17:57 UTC |
| 386bdf0 | Jim Allman | 08 April 2014, 23:13:27 UTC | Relaxing requirement for OAuth token on deployment. | 08 April 2014, 23:13:27 UTC |
| 671a75e | Jim Allman | 08 April 2014, 20:26:45 UTC | Clean up webhook script. | 08 April 2014, 20:26:45 UTC |
| 607f6c2 | Jim Allman | 08 April 2014, 20:22:40 UTC | more test info | 08 April 2014, 20:22:40 UTC |
| 6bc2a26 | Jim Allman | 08 April 2014, 20:16:48 UTC | Add webhook from script (full behavior for test) | 08 April 2014, 20:16:48 UTC |
| 99ea07e | Jim Allman | 08 April 2014, 19:21:02 UTC | Manage webhooks via GitHub API (initial test) | 08 April 2014, 19:21:02 UTC |
| c62c408 | Jim Allman | 02 April 2014, 21:44:17 UTC | Tweak to README | 02 April 2014, 21:44:17 UTC |
| c6feacf | Mark T. Holder | 02 April 2014, 17:43:07 UTC | ignore file | 02 April 2014, 17:43:07 UTC |
| 31304de | Mark T. Holder | 02 April 2014, 05:18:35 UTC | celery task code | 02 April 2014, 05:18:35 UTC |
| 824aab3 | Mark T. Holder | 02 April 2014, 04:54:17 UTC | pushing with celery | 02 April 2014, 04:54:17 UTC |
| 77a8105 | Mark T. Holder | 02 April 2014, 04:23:04 UTC | untested use of celery | 02 April 2014, 04:23:04 UTC |
| 9ca3e49 | Mark T. Holder | 02 April 2014, 02:13:34 UTC | Merge branch 'external-urls' | 02 April 2014, 02:13:34 UTC |
| 98f61f1 | Mark T. Holder | 02 April 2014, 02:13:12 UTC | commented out old parentsha | 02 April 2014, 02:13:12 UTC |
| 630e1e6 | Mark T. Holder | 02 April 2014, 02:12:40 UTC | docs and parentsha for tests | 02 April 2014, 02:12:40 UTC |
| 1b70f2f | Mark T. Holder | 02 April 2014, 02:04:44 UTC | Merge pull request #82 from OpenTreeOfLife/external-urls External urls | 02 April 2014, 02:04:44 UTC |
| f0e9ea3 | Mark T. Holder | 02 April 2014, 02:02:33 UTC | test for new service | 02 April 2014, 02:02:33 UTC |
| d68432d | Mark T. Holder | 02 April 2014, 02:02:12 UTC | new web service for returning an external, github, URL for a study | 02 April 2014, 02:02:12 UTC |
| 2b8d4a1 | Jim Allman | 01 April 2014, 19:54:16 UTC | Merge branch 'master' of github.com:OpenTreeOfLife/api.opentreeoflife.org | 01 April 2014, 19:54:16 UTC |
| c1e6da0 | Jim Allman | 01 April 2014, 19:53:33 UTC | Update nudge-index to match latest docstore format | 01 April 2014, 19:53:33 UTC |
| 87d229e | Mark T. Holder | 01 April 2014, 11:33:38 UTC | Merge branch 'master' of github.com:OpenTreeOfLife/api.opentreeoflife.org | 01 April 2014, 11:33:38 UTC |
| 2357870 | Mark T. Holder | 01 April 2014, 11:14:22 UTC | repo_nexml2json config setting is not longer needed | 01 April 2014, 11:14:22 UTC |
| b0a9e51 | Jim Allman | 01 April 2014, 05:45:58 UTC | Block encoding of %s in URL template | 01 April 2014, 05:45:58 UTC |
| 270af95 | Jim Allman | 01 April 2014, 05:41:02 UTC | Add diagnostic info to oti-nudge | 01 April 2014, 05:41:02 UTC |
| c13c8f7 | Jim Allman | 01 April 2014, 05:35:19 UTC | Fix call to URL() | 01 April 2014, 05:35:19 UTC |
| 75b90b9 | Jim Allman | 01 April 2014, 05:15:56 UTC | Merge branch 'master' of github.com:OpenTreeOfLife/api.opentreeoflife.org | 01 April 2014, 05:15:56 UTC |
| 5f0b90d | Jim Allman | 01 April 2014, 05:14:52 UTC | Coerce to expected format when indexing studies. | 01 April 2014, 05:14:52 UTC |
