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https://github.com/AuReMe/metage2metabo
28 April 2020, 23:27:41 UTC
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Revision Author Date Message Commit Date
966e0cf Clémence Frioux 06 June 2019, 10:39:27 UTC Merge branch 'master' into clyngor 06 June 2019, 10:39:27 UTC
3a59abc Arnaud Belcour 03 June 2019, 20:44:58 UTC Try to fix Travis build. 03 June 2019, 20:44:58 UTC
cdd9e93 Arnaud Belcour 03 June 2019, 20:37:48 UTC Install m2m with setup.py develop in Travis build. 03 June 2019, 20:37:48 UTC
d6edcef cfrioux 03 June 2019, 17:19:45 UTC clean and prepare release for use of clyngor 03 June 2019, 17:19:45 UTC
f5ebb1d Arnaud Belcour 03 June 2019, 15:04:17 UTC First try to fix m2m with clyngor. 03 June 2019, 15:04:17 UTC
04e16a0 cfrioux 03 June 2019, 14:46:37 UTC first changes towards the support of clyngor 03 June 2019, 14:46:37 UTC
2fecdd6 Clémence Frioux 01 June 2019, 09:02:26 UTC Update README.md 01 June 2019, 09:02:26 UTC
a63220b cfrioux 31 May 2019, 21:17:45 UTC force miscoto version and update version of m2m 31 May 2019, 21:17:45 UTC
0b8cbd6 cfrioux 31 May 2019, 17:35:44 UTC force a version of menetools and update version of m2m 31 May 2019, 17:35:44 UTC
12922da cfrioux 23 May 2019, 15:01:49 UTC require latest miscoto version, add requirements in setup.py 23 May 2019, 15:01:49 UTC
833fb01 cfrioux 18 April 2019, 10:04:35 UTC fix typo 18 April 2019, 10:04:35 UTC
b8d2436 Arnaud Belcour 18 April 2019, 08:35:57 UTC Test removing dependencies in setup.py 18 April 2019, 08:35:57 UTC
c06fdc3 Arnaud Belcour 18 April 2019, 08:26:20 UTC Try another way to mock numpy. 18 April 2019, 08:26:20 UTC
c912184 Arnaud Belcour 18 April 2019, 08:15:25 UTC Mock numpy and hide static. 18 April 2019, 08:15:25 UTC
6fda4b4 Arnaud Belcour 16 April 2019, 09:25:57 UTC Try to fix mock. 16 April 2019, 09:25:57 UTC
8507e08 Arnaud Belcour 16 April 2019, 09:14:12 UTC Try to fix import issue with readthedocs. 16 April 2019, 09:14:12 UTC
7cc2b7c Arnaud Belcour 16 April 2019, 09:06:34 UTC Merge branch 'master' of github.com:AuReMe/metage2metabo 16 April 2019, 09:06:34 UTC
c22b1a5 Arnaud Belcour 16 April 2019, 09:04:15 UTC Move to version 0.0.8. Fix issue with __main__.py in Doc. Fix issue when only m2m is called. Add m2m test argument, move data folder according to this. 16 April 2019, 09:04:15 UTC
1641fcb cfrioux 04 April 2019, 05:45:28 UTC Precise pathway tools requirements Pathway Tools is not required for all commands, only recon and workflow 04 April 2019, 05:45:28 UTC
0c667b7 Arnaud Belcour 03 April 2019, 12:17:18 UTC Compatibility patch for new version of padmet-utils. 03 April 2019, 12:17:18 UTC
adba131 Arnaud Belcour 01 April 2019, 14:14:28 UTC Fix Readme TOC. 01 April 2019, 14:14:28 UTC
bea7b64 Arnaud Belcour 01 April 2019, 14:05:18 UTC Add Docker/Singularity part in Readme. 01 April 2019, 14:05:18 UTC
8620012 cfrioux 01 April 2019, 13:55:54 UTC upgrade version number 01 April 2019, 13:55:54 UTC
71baaed cfrioux 01 April 2019, 13:55:28 UTC add argument type for sbml level parser to overcome error 01 April 2019, 13:55:28 UTC
899a450 cfrioux 01 April 2019, 11:34:22 UTC Merge branch 'master' of https://github.com/AuReMe/metage2metabo 01 April 2019, 11:34:22 UTC
1e407eb cfrioux 01 April 2019, 11:34:18 UTC remove special character in log 01 April 2019, 11:34:18 UTC
6c45fd4 cfrioux 01 April 2019, 07:28:03 UTC remove typo in README 01 April 2019, 07:28:03 UTC
8c1d3f7 cfrioux 01 April 2019, 06:53:52 UTC add new recon option in tuto 01 April 2019, 06:53:52 UTC
80c8783 cfrioux 01 April 2019, 06:22:35 UTC update doc and README with commands latest help message 01 April 2019, 06:22:35 UTC
7388e16 cfrioux 29 March 2019, 13:03:41 UTC add noorphan option for recon and workflow 29 March 2019, 13:03:41 UTC
bc5c9ab cfrioux 29 March 2019, 07:10:25 UTC add details on scope computation 29 March 2019, 07:10:25 UTC
7c6ddad Arnaud Belcour 28 March 2019, 16:12:19 UTC Move to version 0.0.4. Fix package name in pip install. 28 March 2019, 16:12:19 UTC
6611544 cfrioux 28 March 2019, 14:56:05 UTC add runtimes for each step 28 March 2019, 14:56:05 UTC
61bf203 cfrioux 28 March 2019, 13:13:08 UTC prevent error if no sbmls in inputs dir 28 March 2019, 13:13:08 UTC
ab9501d cfrioux 28 March 2019, 12:38:44 UTC add sentence in tuto 28 March 2019, 12:38:44 UTC
02e4781 cfrioux 28 March 2019, 12:36:00 UTC fix syntax tuto 28 March 2019, 12:36:00 UTC
c1a9fbb cfrioux 28 March 2019, 11:11:15 UTC fix syntax tuto 28 March 2019, 11:11:15 UTC
d215271 cfrioux 28 March 2019, 10:56:35 UTC finish workflow tuto and add its data in test 28 March 2019, 10:56:35 UTC
02a4de7 cfrioux 28 March 2019, 10:27:12 UTC add running time at the end of the programm 28 March 2019, 10:27:12 UTC
e3e28f1 cfrioux 28 March 2019, 08:28:56 UTC Update README.md 28 March 2019, 08:28:56 UTC
f227a9a cfrioux 28 March 2019, 08:23:02 UTC forgot image for supp information 28 March 2019, 08:23:02 UTC
32099da cfrioux 28 March 2019, 08:21:22 UTC add supp info and add references in doc 28 March 2019, 08:21:22 UTC
89c4479 cfrioux 27 March 2019, 14:47:29 UTC fix typos tuto 27 March 2019, 14:47:29 UTC
22ce155 cfrioux 27 March 2019, 14:18:45 UTC add host doc in tuto, fix a typo in level2 sbml name for conversion 27 March 2019, 14:18:45 UTC
77dc5ea cfrioux 27 March 2019, 13:12:23 UTC continue tuto 27 March 2019, 13:12:23 UTC
bf66301 Arnaud Belcour 27 March 2019, 10:48:15 UTC Fix typos. 27 March 2019, 10:48:15 UTC
5fdf1bb Arnaud Belcour 27 March 2019, 09:00:27 UTC Fix issue with sbml_level in workflow. 27 March 2019, 09:00:27 UTC
a3fb2be cfrioux 27 March 2019, 07:49:46 UTC add average size of scopes in iscope, continue tutorial 27 March 2019, 07:49:46 UTC
f6e199f cfrioux 26 March 2019, 16:06:06 UTC fix typos and start tutorial 26 March 2019, 16:06:06 UTC
5776a3a Arnaud Belcour 26 March 2019, 12:56:59 UTC Update doc and Singularity. 26 March 2019, 12:56:59 UTC
6b4c56c Arnaud Belcour 26 March 2019, 09:23:16 UTC Add before_script in travis.yml. 26 March 2019, 09:23:16 UTC
2eb9bd1 Arnaud Belcour 26 March 2019, 09:09:23 UTC Add new tests in travis.yml. 26 March 2019, 09:09:23 UTC
a8ecf38 cfrioux 26 March 2019, 08:45:53 UTC remove useless import 26 March 2019, 08:45:53 UTC
af23ec8 cfrioux 26 March 2019, 08:44:57 UTC add metabolic data for tests 26 March 2019, 08:44:57 UTC
d7fe335 Arnaud Belcour 26 March 2019, 08:32:13 UTC Add sbml_level variable in pgdb_to_sbml multiprocessing. 26 March 2019, 08:32:13 UTC
6245932 cfrioux 26 March 2019, 08:14:28 UTC create tests for mincom and fix a typo in logs description for mincom 26 March 2019, 08:14:28 UTC
349cc58 cfrioux 26 March 2019, 07:42:16 UTC prepare option for SBML level choice in recon, add todos in sbml management to finish 26 March 2019, 07:42:16 UTC
29b9abb cfrioux 26 March 2019, 07:41:05 UTC Merge branch 'master' of https://github.com/AuReMe/metage2metabo 26 March 2019, 07:41:05 UTC
7f5eca7 cfrioux 26 March 2019, 07:33:09 UTC fix typo 26 March 2019, 07:33:09 UTC
7aa01a8 cfrioux 26 March 2019, 07:32:53 UTC add a --quiet option and use it for tests 26 March 2019, 07:32:53 UTC
7ff4b91 Arnaud Belcour 25 March 2019, 17:02:29 UTC Remove libsbml warnings from test in travis. Add Doc for Docker and Singularity. 25 March 2019, 17:02:29 UTC
c1a3638 cfrioux 25 March 2019, 16:04:01 UTC test addedvalue subcommand 25 March 2019, 16:04:01 UTC
8767d8a cfrioux 25 March 2019, 15:54:23 UTC add a todo for mincom json export 25 March 2019, 15:54:23 UTC
477701b cfrioux 25 March 2019, 15:38:34 UTC Merge branch 'master' of https://github.com/AuReMe/metage2metabo 25 March 2019, 15:38:34 UTC
bf61af3 cfrioux 25 March 2019, 15:15:12 UTC produce a json with the output of miscoto_scope for m2m cscope 25 March 2019, 15:15:12 UTC
31bdef9 cfrioux 25 March 2019, 12:03:18 UTC Update README.md 25 March 2019, 12:03:18 UTC
cca6e60 cfrioux 25 March 2019, 11:49:12 UTC add a python packages requirements file 25 March 2019, 11:49:12 UTC
3e2c877 Arnaud Belcour 25 March 2019, 09:21:23 UTC Update Readme and rename test data folder. 25 March 2019, 09:21:23 UTC
3c7275b Arnaud Belcour 25 March 2019, 08:57:35 UTC Add a test function. 25 March 2019, 08:57:35 UTC
ed21ccf Arnaud Belcour 25 March 2019, 08:50:12 UTC Update travis CI file. 25 March 2019, 08:50:12 UTC
9f15bc1 Arnaud Belcour 25 March 2019, 08:40:45 UTC Fix travis filename. 25 March 2019, 08:40:45 UTC
7dc2ca9 Arnaud Belcour 25 March 2019, 08:38:56 UTC Add travis CI. 25 March 2019, 08:38:56 UTC
40c4b57 cfrioux 22 March 2019, 17:30:18 UTC remove a TODO 22 March 2019, 17:30:18 UTC
d31a19a cfrioux 22 March 2019, 17:29:40 UTC test validity of files and directories paths 22 March 2019, 17:29:40 UTC
6911873 cfrioux 22 March 2019, 17:16:55 UTC Merge branch 'master' of https://github.com/AuReMe/metage2metabo 22 March 2019, 17:16:55 UTC
a24a2a6 cfrioux 22 March 2019, 17:16:44 UTC check if host is in correct sbml level 22 March 2019, 17:16:44 UTC
1568342 Arnaud Belcour 22 March 2019, 16:19:22 UTC Update docs according to readme. Add TODO in test. 22 March 2019, 16:19:22 UTC
b1381f7 cfrioux 22 March 2019, 16:15:25 UTC add NCBI Blast download page to README 22 March 2019, 16:15:25 UTC
ff11336 cfrioux 22 March 2019, 16:06:33 UTC fix package name error 22 March 2019, 16:06:33 UTC
e92c2fa cfrioux 22 March 2019, 16:04:28 UTC add more mock_imports 22 March 2019, 16:04:28 UTC
cf9cbf0 cfrioux 22 March 2019, 16:03:36 UTC add more mock_imports 22 March 2019, 16:03:36 UTC
517ec28 cfrioux 22 March 2019, 16:00:18 UTC fix syntax error 22 March 2019, 16:00:18 UTC
9d3a415 cfrioux 22 March 2019, 15:59:23 UTC add mock_import 22 March 2019, 15:59:23 UTC
9efbc44 cfrioux 22 March 2019, 15:49:27 UTC change path import in conf.py 22 March 2019, 15:49:27 UTC
af73b36 cfrioux 22 March 2019, 15:41:04 UTC Merge branch 'master' of https://github.com/AuReMe/metage2metabo 22 March 2019, 15:41:04 UTC
b4000df cfrioux 22 March 2019, 15:40:48 UTC uncomment imports in doc conf 22 March 2019, 15:40:48 UTC
8e84be0 Arnaud Belcour 22 March 2019, 14:50:50 UTC Add test for m2m recon. 22 March 2019, 14:50:50 UTC
e4087d8 cfrioux 22 March 2019, 14:09:00 UTC update README 22 March 2019, 14:09:00 UTC
b58e948 cfrioux 22 March 2019, 12:55:28 UTC Merge branch 'master' of https://github.com/AuReMe/metage2metabo 22 March 2019, 12:55:28 UTC
f3380e6 cfrioux 22 March 2019, 12:55:24 UTC provide and test requirements 22 March 2019, 12:55:24 UTC
b290611 cfrioux 22 March 2019, 09:54:06 UTC Update README.md 22 March 2019, 09:54:06 UTC
58e8fbe cfrioux 22 March 2019, 09:49:45 UTC Update README.md 22 March 2019, 09:49:45 UTC
e4b9c9d cfrioux 22 March 2019, 09:43:53 UTC update README ptools must be in PATH 22 March 2019, 09:43:53 UTC
fe39e6f Arnaud Belcour 22 March 2019, 09:36:35 UTC Merge branch 'master' of github.com:AuReMe/metage2metabo 22 March 2019, 09:36:35 UTC
6ed1b64 Arnaud Belcour 22 March 2019, 09:36:10 UTC Update doc according to readme. 22 March 2019, 09:36:10 UTC
7673386 cfrioux 22 March 2019, 09:34:24 UTC add main to API in doc 22 March 2019, 09:34:24 UTC
40fc38b cfrioux 22 March 2019, 08:34:41 UTC Update README.md 22 March 2019, 08:34:41 UTC
e5443bf cfrioux 22 March 2019, 08:29:45 UTC detail table of contents 22 March 2019, 08:29:45 UTC
08159df cfrioux 22 March 2019, 08:27:28 UTC tiny format change 22 March 2019, 08:27:28 UTC
b6277a0 cfrioux 22 March 2019, 08:22:28 UTC add pypi shield 22 March 2019, 08:22:28 UTC
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