| ea6dcc5 | Dan Durkin | 25 November 2012, 21:28:56 UTC | added some fixes for tests that were failing | 25 November 2012, 21:28:56 UTC |
| 11edb8b | Jacob Asiedu | 23 November 2012, 21:34:10 UTC | Pointing to new schema | 23 November 2012, 21:34:10 UTC |
| f7c3b46 | Jacob Asiedu | 23 November 2012, 21:25:54 UTC | Cleaning up uni tests | 23 November 2012, 21:25:54 UTC |
| 50a3837 | Jacob Asiedu | 23 November 2012, 18:40:12 UTC | Adding change log to java directory | 23 November 2012, 18:40:12 UTC |
| c48ce52 | Jacob Asiedu | 23 November 2012, 18:38:59 UTC | Updating tests around Project | 23 November 2012, 18:38:59 UTC |
| 297271a | Jacob Asiedu | 23 November 2012, 15:30:27 UTC | Adding Project Document. No tests yet,waiting to refactor Project Contexts etc | 23 November 2012, 15:30:27 UTC |
| d24d409 | Jacob Asiedu | 23 November 2012, 14:04:49 UTC | Adding link generation of external references and systems to Projects and Experiments | 23 November 2012, 14:04:49 UTC |
| 9546f9d | Jacob Asiedu | 22 November 2012, 00:13:18 UTC | Adding generation of external reference and external system resources | 22 November 2012, 00:13:18 UTC |
| 22f37d9 | Jacob Asiedu | 22 November 2012, 00:12:26 UTC | Adding generation of external reference and external system resources | 22 November 2012, 00:12:26 UTC |
| 70f1312 | Jacob Asiedu | 21 November 2012, 22:38:31 UTC | Merge branch 'domain-model-updates-dataExport-updates' of github.com:broadinstitute/BARD into domain-model-updates-dataExport-updates | 21 November 2012, 22:38:31 UTC |
| c53171a | Jacob Asiedu | 21 November 2012, 22:38:16 UTC | Adding externalReferences and externalSystems code | 21 November 2012, 22:38:16 UTC |
| 3136c67 | Dan Durkin | 21 November 2012, 22:24:09 UTC | fixes for having assay use links to refer to assayDocuments | 21 November 2012, 22:24:09 UTC |
| e51acf0 | Dan Durkin | 21 November 2012, 21:33:08 UTC | removed AssayDocuments elements from assay - assay Documents will be represented in links | 21 November 2012, 21:33:08 UTC |
| fe55010 | Dan Durkin | 21 November 2012, 21:32:32 UTC | updated comment on link, to indicate links point to any top level resource not just Elements | 21 November 2012, 21:32:32 UTC |
| adc4f33 | Dan Durkin | 21 November 2012, 21:31:45 UTC | fixed dictionary test - unit is now represented as a link instead of a text attribute | 21 November 2012, 21:31:45 UTC |
| 6fd3717 | Dan Durkin | 21 November 2012, 20:33:45 UTC | fixed broken test | 21 November 2012, 20:33:45 UTC |
| 5fe70ca | Dan Durkin | 21 November 2012, 20:21:17 UTC | some work on assay document have questions around this need to discuss with Jacob | 21 November 2012, 20:21:17 UTC |
| 229a2d8 | Dan Durkin | 21 November 2012, 19:49:50 UTC | Merge remote-tracking branch 'upstream/domain-model-updates-dataExport-updates' into domain-model-updates-dataExport-updates | 21 November 2012, 19:49:50 UTC |
| 54255ce | Jacob Asiedu | 21 November 2012, 19:44:29 UTC | Adding external references schema | 21 November 2012, 19:44:29 UTC |
| 404d226 | Dan Durkin | 21 November 2012, 19:33:44 UTC | Step contexts have a display order so modeling as a list | 21 November 2012, 19:33:44 UTC |
| 6320f55 | Dan Durkin | 21 November 2012, 17:49:22 UTC | Merge remote-tracking branch 'upstream/domain-model-updates-dataExport-updates' into domain-model-updates-dataExport-updates | 21 November 2012, 17:49:22 UTC |
| 7204ddd | Dan Durkin | 21 November 2012, 17:48:57 UTC | finished tests for AssaySchema changes | 21 November 2012, 17:48:57 UTC |
| e993e5d | Jacob Asiedu | 21 November 2012, 17:37:11 UTC | Adding asbtract types for Context's and ContextItems | 21 November 2012, 17:37:11 UTC |
| 818a861 | Jacob Asiedu | 21 November 2012, 17:33:27 UTC | Adding asbtract types for Context's and ContextItems | 21 November 2012, 17:33:27 UTC |
| c32b48d | Jacob Asiedu | 21 November 2012, 16:05:52 UTC | Adding an abstract context item | 21 November 2012, 16:05:52 UTC |
| 2c965b7 | Jacob Asiedu | 21 November 2012, 15:39:39 UTC | Adding projectDocument to schema | 21 November 2012, 15:39:39 UTC |
| cf6f2b7 | Dan Durkin | 21 November 2012, 14:57:34 UTC | there was a difference between the grails command line and and Intellij command line was using the TestDataConfig for the Build test data plugin but Intellij wasn't. we updated the buildConfigs so the BardDomainModel exports the build-test-data plugin, removed it as a dependency from dataExport and moved the TestDataConfig.groovy file to src/groovy so it appears on the classpath both on command line and in Intellij | 21 November 2012, 14:57:34 UTC |
| 1eb0fb5 | Dan Durkin | 20 November 2012, 21:17:16 UTC | WIP more work on getting the unit tests working again. | 20 November 2012, 21:17:16 UTC |
| e689d08 | Dan Durkin | 20 November 2012, 17:48:19 UTC | WIP updated tests for xml generation for measure - updated the code for generating measure xml - added refs to assayContexts via the new assayContextMeasure join table | 20 November 2012, 17:48:19 UTC |
| 6b1e02b | Dan Durkin | 20 November 2012, 15:57:39 UTC | updated assaySchema to use the suffix of Ref when referencing other entities whether the entity is in the doc or external to the doc | 20 November 2012, 15:57:39 UTC |
| 5eac056 | Dan Durkin | 20 November 2012, 14:52:29 UTC | WIP fixing broken tests and modifying xml producing code to match new schema | 20 November 2012, 14:52:29 UTC |
| 6670297 | Dan Durkin | 20 November 2012, 14:42:11 UTC | fixed project import package | 20 November 2012, 14:42:11 UTC |
| 7b3fc00 | Dan Durkin | 19 November 2012, 21:56:23 UTC | restored all the unit tests for subclasses of AbstractElement | 19 November 2012, 21:56:23 UTC |
| 1bcdd1f | Dan Durkin | 19 November 2012, 21:13:55 UTC | Revert "Fixed the Element unit tests" This reverts commit eff08798b33bd17a50e1017428568370e383d0e0. The dataExport was using these, so we're adding them back. | 19 November 2012, 21:13:55 UTC |
| dfed76f | Dan Durkin | 19 November 2012, 21:10:29 UTC | Merge branch 'domain-model-updates-cap-updates' into domain-model-updates-dataExport-updates | 19 November 2012, 21:10:29 UTC |
| d94bfa7 | Dan Durkin | 19 November 2012, 21:10:05 UTC | correcting imports for Project related classes that got moved into a project package | 19 November 2012, 21:10:05 UTC |
| 2f97def | Dan Durkin | 19 November 2012, 20:39:19 UTC | added plugin dependencies on build-test-data and fixtures | 19 November 2012, 20:40:05 UTC |
| c548cda | Dan Durkin | 19 November 2012, 20:18:41 UTC | updated assaySchema to reflect the domain model factoring | 19 November 2012, 20:40:05 UTC |
| e09c89f | Dan Durkin | 19 November 2012, 20:18:02 UTC | putting schemas and some example docs in src/java so their on the classpath for validations these all already existed but were in gh-pages branch | 19 November 2012, 20:40:04 UTC |
| 9202b0c | Dan Durkin | 19 November 2012, 16:12:38 UTC | removed static import it was unneeded and moved | 19 November 2012, 16:12:38 UTC |
| 6a9d8bc | Dan Durkin | 15 November 2012, 21:25:20 UTC | some initial updates to CAP for the domain model changes - updated failing unit tests - removed the static typing of fixture as this was failing to compile in Intellij, fine on command line for the inline plugin | 19 November 2012, 14:52:49 UTC |
| 7e0f82c | Dan Durkin | 17 November 2012, 03:17:05 UTC | updated Descriptor instances: - converted unit from string to Element - added new columns for leaf and fullPath - added tests | 17 November 2012, 03:17:05 UTC |
| 5c4c090 | Dan Durkin | 15 November 2012, 16:55:09 UTC | test ran in the IDE but not on command line - specifically wiring assay, assayContex, measure and assayContextMeasure | 15 November 2012, 16:55:09 UTC |
| 064605a | Dan Durkin | 15 November 2012, 16:47:31 UTC | test wasn't extending IntegrationSpec | 15 November 2012, 16:47:31 UTC |
| f79e3e6 | Dan Durkin | 15 November 2012, 04:14:16 UTC | added a transitional load_data routine | 15 November 2012, 04:14:16 UTC |
| a7aeb11 | Dan Durkin | 14 November 2012, 20:50:55 UTC | updated tables with additional stats_modifier_id columns (Result and Measure) - added tests | 14 November 2012, 20:57:26 UTC |
| df096e1 | Dan Durkin | 14 November 2012, 15:40:14 UTC | Added missing index for AssayContextMeasure, added unit and integration tests | 14 November 2012, 15:40:14 UTC |
| 091967e | Dan Durkin | 13 November 2012, 21:06:09 UTC | fix for failing test - need to flush session - added notThrown call to indicate we're testing for the absence of an exception | 13 November 2012, 21:06:09 UTC |
| 9862f78 | Dan Durkin | 13 November 2012, 20:53:49 UTC | added a belongsTo parentMeasure config - fixed column mapping for entryUnitElement ( was Entry_unit, now entry_unit_id ) - added unit and integration tests | 13 November 2012, 20:53:49 UTC |
| 4375136 | Dan Durkin | 13 November 2012, 20:51:55 UTC | added integration test for ExternalSystem | 13 November 2012, 20:51:55 UTC |
| 706d605 | Dan Durkin | 13 November 2012, 20:48:33 UTC | removed the save from unit test, only used in integration test and was causing problems on the command line | 13 November 2012, 20:48:33 UTC |
| 829da44 | Dan Durkin | 13 November 2012, 19:10:08 UTC | added validator for requiring an experiment or project but not both added unit and integration tests | 13 November 2012, 19:10:08 UTC |
| f443bf1 | Dan Durkin | 13 November 2012, 19:08:51 UTC | removed unneeded lines and added inherit(false) to prevent getting any additional repo config from plugins | 13 November 2012, 19:08:51 UTC |
| da32876 | Dan Durkin | 13 November 2012, 17:27:50 UTC | fixed belongsTo mapping to fix failing test | 13 November 2012, 17:27:50 UTC |
| bbc4ce6 | Dan Durkin | 13 November 2012, 17:03:06 UTC | added config for clover | 13 November 2012, 17:03:06 UTC |
| a02a3f6 | Dan Durkin | 13 November 2012, 17:01:50 UTC | Removed belongsTo mapping in Experiment and added test to ensure no cascade delete from Assay | 13 November 2012, 17:01:50 UTC |
| a376ebc | Dan Durkin | 09 November 2012, 22:08:03 UTC | added clover | 09 November 2012, 22:08:03 UTC |
| 38af21f | Dan Durkin | 09 November 2012, 20:39:06 UTC | WIP, added AssayContextMeasure and adding tests - corrected Measure mapping | 09 November 2012, 20:39:06 UTC |
| 98b1668 | Dan Durkin | 09 November 2012, 16:56:20 UTC | moved project related tests into project package | 09 November 2012, 16:56:20 UTC |
| 50448b9 | Dan Durkin | 09 November 2012, 16:40:19 UTC | moved project related domains into project package | 09 November 2012, 16:40:19 UTC |
| 6095a02 | Dan Durkin | 09 November 2012, 16:16:09 UTC | cleaned up idea ignores | 09 November 2012, 16:16:09 UTC |
| 22f6778 | Dan Durkin | 09 November 2012, 16:13:08 UTC | moved abstract specs for Document, Context and ContextItems to a model package | 09 November 2012, 16:13:08 UTC |
| da654cc | Dan Durkin | 08 November 2012, 22:03:19 UTC | moved AbstractContext, ContextItem and Document UnitSpecs to a model package | 08 November 2012, 22:03:19 UTC |
| 3d73fac | Dan Durkin | 08 November 2012, 21:58:10 UTC | moved ElementStatus enum to it's own file | 08 November 2012, 21:58:10 UTC |
| 3d083e9 | Dan Durkin | 08 November 2012, 21:57:22 UTC | moved the abstract classes into a model package | 08 November 2012, 21:57:22 UTC |
| ed6d10a | Dan Durkin | 08 November 2012, 21:31:27 UTC | refactored around Contexts and ContextItems - created abstractContext and AbstractContextItem - fixed tests | 08 November 2012, 21:31:27 UTC |
| 9c06c9f | Dan Durkin | 07 November 2012, 18:12:44 UTC | renamed RunContextItem to AbstractContextItem | 07 November 2012, 18:12:44 UTC |
| 777541e | Dan Durkin | 07 November 2012, 17:12:36 UTC | Refactored around Contexts abstracting an AbstractContext - added analogous abstractions for unit and integration tests | 07 November 2012, 17:12:36 UTC |
| d703f61 | Dan Durkin | 06 November 2012, 21:00:11 UTC | cleaned up context unit specs to use shared parent variable for owning object | 06 November 2012, 21:00:11 UTC |
| e270746 | Dan Durkin | 05 November 2012, 22:17:53 UTC | created AbstractDocument which Assay and Project Documents extend and added unit tests for each refactored Project integration spec and tested cascade saves | 05 November 2012, 22:17:53 UTC |
| 3153d85 | Dan Durkin | 05 November 2012, 19:51:24 UTC | fixed unit test | 05 November 2012, 19:51:24 UTC |
| f00733e | Dan Durkin | 05 November 2012, 14:52:39 UTC | Work in Progress, added unit tests and refactored around Contexts and ContextItems | 05 November 2012, 14:52:39 UTC |
| caee3bd | Dan Durkin | 02 November 2012, 14:53:06 UTC | moved AssayStatus to top level enum - @Build annotation didn't like the AssayStatus enum in the same file as Assay - cleaned up unit and integration tests | 02 November 2012, 14:53:06 UTC |
| b1660de | Dan Durkin | 02 November 2012, 14:51:19 UTC | added ExperimentContext - added unit and integration tests - moved ExperimentStatus enum to top level class as @Build annotation didn't like when it was in the same file as Experiment | 02 November 2012, 14:51:19 UTC |
| d3d1f75 | Dan Durkin | 01 November 2012, 17:12:36 UTC | Added unit and integration tests for Experiment updated constraints to reflect current values | 01 November 2012, 17:48:40 UTC |
| ec0a266 | Dan Durkin | 01 November 2012, 16:22:03 UTC | renamed assayTitle to assayShortName - fixed tests | 01 November 2012, 16:22:03 UTC |
| fad3788 | Dan Durkin | 01 November 2012, 15:46:21 UTC | updated project in list and unit and integration tests | 01 November 2012, 15:46:21 UTC |
| eff0879 | Dan Durkin | 01 November 2012, 15:08:22 UTC | Fixed the Element unit tests - updated unit to be a reference to another Element - eliminated all the Type specific elements as we're currently not using this, we can add it back if it has value - remove the unneeded integration and unit tests | 01 November 2012, 15:08:22 UTC |
| ff00a34 | Dan Durkin | 01 November 2012, 14:29:12 UTC | updated Element to have foreign key for unit instead of string fixed integration tests | 01 November 2012, 14:52:18 UTC |
| d0a5edb | Dan Durkin | 01 November 2012, 14:23:56 UTC | updated changelogs and sql files with changes from Simon | 01 November 2012, 14:23:56 UTC |
| 5962a5b | dllahr | 26 October 2012, 17:41:29 UTC | fix application.properties that I broke | 26 October 2012, 17:41:29 UTC |
| 9ef3a85 | dllahr | 26 October 2012, 17:33:51 UTC | Merge branch 'master' of github.com:broadinstitute/BARD Conflicts: BARD/application.properties | 26 October 2012, 17:33:51 UTC |
| a69fe29 | Dan Durkin | 25 October 2012, 19:39:15 UTC | added back reference to svn to fix build TODO: track done this dependency and eliminate it | 25 October 2012, 19:39:15 UTC |
| c645c90 | dllahr | 25 October 2012, 19:34:59 UTC | add back application.properties file - had to run grails upgrade again and it added this file | 25 October 2012, 19:34:59 UTC |
| ca51deb | Dan Durkin | 25 October 2012, 19:24:18 UTC | adding back application.properties file | 25 October 2012, 19:24:18 UTC |
| 25b63af | Dan Durkin | 25 October 2012, 19:03:40 UTC | changed code for fixtures to dynamically name beans and use a for loop | 25 October 2012, 19:06:49 UTC |
| 3a59637 | Dan Durkin | 25 October 2012, 17:14:48 UTC | cleaned up some the the data setup | 25 October 2012, 19:06:49 UTC |
| 773c383 | Yasel Cruz | 25 October 2012, 18:01:06 UTC | WIP | 25 October 2012, 18:01:06 UTC |
| 9f8741f | Yasel Cruz | 25 October 2012, 16:27:00 UTC | New changes: Create View Assay Definition page. On view assay definition page change assay to assay definition, put ADID in title. Add edit button to View Assay Definition page. Change title of Edit page, add ADID to title, shorten title of 1st collapsible panel. Add save and cancel buttons to Edit Assay page. Add Add Item Wizard button to each card in Edit Assay Definition page. | 25 October 2012, 16:27:00 UTC |
| b471dc7 | gwalzer | 25 October 2012, 14:25:22 UTC | adding another test-case to AssayServiceIntegrationSpec | 25 October 2012, 14:25:22 UTC |
| f0ab7b3 | gwalzer | 25 October 2012, 14:03:42 UTC | Merge branch 'master' of github.com:broadinstitute/BARD into assayService_with_fixture | 25 October 2012, 14:03:42 UTC |
| e484276 | gwalzer | 25 October 2012, 14:03:23 UTC | adding Fixture to the AssayServiceIntegrationSpec test | 25 October 2012, 14:03:23 UTC |
| a8532d4 | dllahr | 24 October 2012, 19:53:56 UTC | fix indent in CbipCrowd section of Config.groovy | 24 October 2012, 19:53:56 UTC |
| 745357c | dllahr | 24 October 2012, 18:07:45 UTC | upgrade to grails 2.11 | 24 October 2012, 18:07:45 UTC |
| ef2b901 | gwalzer | 24 October 2012, 17:25:30 UTC | Merge branch 'master' of github.com:broadinstitute/BARD | 24 October 2012, 17:25:30 UTC |
| fc653a8 | gwalzer | 24 October 2012, 17:25:12 UTC | re-upgrading to grails 2.1.1 | 24 October 2012, 17:25:12 UTC |
| 5c9e51b | gwalzer | 24 October 2012, 16:43:24 UTC | Fixing the association problem between ExternalReference and Experiment | 24 October 2012, 16:43:24 UTC |
| 1fc5038 | Yasel Cruz | 23 October 2012, 16:51:20 UTC | Merge branch 'master' of https://github.com/broadinstitute/BARD | 23 October 2012, 16:51:20 UTC |
| 68909f8 | Yasel Cruz | 23 October 2012, 16:46:28 UTC | change to display field in select card | 23 October 2012, 16:46:28 UTC |
| 279bcba | gwalzer | 23 October 2012, 16:09:50 UTC | merging from master | 23 October 2012, 16:09:50 UTC |
