| 02a5359 | Mihai Surdeanu | 21 September 2016, 14:10:27 UTC | Added test for E2F | 21 September 2016, 14:10:27 UTC |
| 38b27b4 | Mihai Surdeanu | 19 September 2016, 02:11:30 UTC | better logging | 19 September 2016, 02:11:30 UTC |
| 020fe2f | Mihai Surdeanu | 19 September 2016, 02:07:52 UTC | better loggin | 19 September 2016, 02:07:52 UTC |
| e68c8f7 | Mihai Surdeanu | 19 September 2016, 02:02:11 UTC | Merge branch 'master' of github.com:clulab/reach | 19 September 2016, 02:02:11 UTC |
| b7c1124 | Mihai Surdeanu | 19 September 2016, 02:01:44 UTC | Minor improvement to NxmlSearcher | 19 September 2016, 02:01:44 UTC |
| ed85a9a | Tom Hicks | 16 September 2016, 23:44:07 UTC | Merge pull request #366 from clulab/drugkb Drug KB added to Reach | 16 September 2016, 23:44:07 UTC |
| 45ede1f | Tom Hicks | 16 September 2016, 22:44:10 UTC | Merge latest 'master' into drugkb | 16 September 2016, 22:44:10 UTC |
| e541ce6 | Tom Hicks | 16 September 2016, 22:41:49 UTC | Update build to use Bioresources 1.1.17. | 16 September 2016, 22:41:49 UTC |
| a92e047 | Tom Hicks | 16 September 2016, 02:21:35 UTC | Update for addition of HMS drug KB. | 16 September 2016, 02:21:35 UTC |
| 5f8bf03 | Tom Hicks | 16 September 2016, 00:26:33 UTC | Merge grounding from branch (atcc) with 2nd cell line. | 16 September 2016, 00:26:33 UTC |
| 632c222 | Tom Hicks | 15 September 2016, 22:51:13 UTC | Merge latest 'master' into hanserrs | 15 September 2016, 22:51:13 UTC |
| f1910b2 | Tom Hicks | 15 September 2016, 22:49:45 UTC | This branch depends on Bioresources 1.1.16. | 15 September 2016, 22:49:45 UTC |
| 7efc968 | Tom Hicks | 15 September 2016, 22:45:31 UTC | Add tests for overrides as a result of Hans error analysis. | 15 September 2016, 22:45:31 UTC |
| aae3fb1 | Mihai Surdeanu | 15 September 2016, 22:33:50 UTC | Merge pull request #365 from clulab/Issue375_context_engine Bug fix for the context engine error in Issue 357 | 15 September 2016, 22:33:50 UTC |
| 9c282ec | Mihai Surdeanu | 14 September 2016, 18:58:35 UTC | Merge pull request #362 from clulab/issue338 Problems with complex formation from ligation | 14 September 2016, 18:58:35 UTC |
| 0206ec2 | Marco Antonio Valenzuela Escárcega | 14 September 2016, 18:13:40 UTC | removed "ligation" from binding triggers | 14 September 2016, 18:13:40 UTC |
| fa9a235 | Marco Antonio Valenzuela Escárcega | 14 September 2016, 17:51:21 UTC | disallow bindings with overlapping participants | 14 September 2016, 17:51:21 UTC |
| 49c0d83 | Mihai Surdeanu | 09 September 2016, 15:46:55 UTC | Merge pull request #360 from clulab/json-serialization Json serialization of CorefMention | 09 September 2016, 15:46:55 UTC |
| d4a5843 | Gus Hahn-Powell | 09 September 2016, 09:02:04 UTC | Updated CHANGES and README | 09 September 2016, 09:02:04 UTC |
| 9defc82 | Gus Hahn-Powell | 09 September 2016, 08:28:48 UTC | More tests for json serialization of CorefMention | 09 September 2016, 08:28:48 UTC |
| 6741003 | Gus Hahn-Powell | 09 September 2016, 08:28:03 UTC | Bug fix in json serialization of CorefMention | 09 September 2016, 08:28:24 UTC |
| 872e257 | Gus Hahn-Powell | 09 September 2016, 08:27:10 UTC | Cleanup | 09 September 2016, 08:27:10 UTC |
| 2f0860f | Gus Hahn-Powell | 09 September 2016, 05:27:19 UTC | Added tests for json serialization | 09 September 2016, 05:27:19 UTC |
| 2e2f47f | Gus Hahn-Powell | 09 September 2016, 05:25:40 UTC | Cleanup for json serialization | 09 September 2016, 05:25:40 UTC |
| 09051c5 | Gus Hahn-Powell | 08 September 2016, 23:39:06 UTC | Merge branch 'master' into json-serialization | 08 September 2016, 23:39:06 UTC |
| 938980c | Gus Hahn-Powell | 08 September 2016, 23:27:40 UTC | CorefMention => json | 08 September 2016, 23:27:40 UTC |
| e86574b | Gus Hahn-Powell | 08 September 2016, 23:25:20 UTC | Keep track of paths whenever possible | 08 September 2016, 23:25:20 UTC |
| 7435b3c | Gus Hahn-Powell | 08 September 2016, 23:20:42 UTC | Use processors v5.9.6 | 08 September 2016, 23:20:42 UTC |
| 6785d09 | enoriega | 08 September 2016, 20:42:23 UTC | Bug fix for the context engine error in Issue 375 | 08 September 2016, 20:42:23 UTC |
| 240781c | Mihai Surdeanu | 08 September 2016, 19:04:56 UTC | Update CHANGES.md | 08 September 2016, 19:04:56 UTC |
| 1b70b32 | Mihai Surdeanu | 07 September 2016, 17:44:32 UTC | Merge pull request #348 from clulab/issue346 Issue 346 | 07 September 2016, 17:44:32 UTC |
| 891c400 | Dane Bell | 06 September 2016, 19:57:35 UTC | Allow ComplexEvents that have ComplexEvents as args | 06 September 2016, 19:57:35 UTC |
| b0d7c95 | Gus Hahn-Powell | 06 September 2016, 10:30:44 UTC | Prelim. json serialization support for BioMentions | 06 September 2016, 10:30:44 UTC |
| 1a7da79 | Gus Hahn-Powell | 04 September 2016, 23:12:53 UTC | Typo | 04 September 2016, 23:12:53 UTC |
| d9317e8 | Gus Hahn-Powell | 04 September 2016, 23:11:07 UTC | Simplify debugging lines | 04 September 2016, 23:12:16 UTC |
| 1ccc66c | Gus Hahn-Powell | 04 September 2016, 23:10:46 UTC | Changes to display package object | 04 September 2016, 23:10:46 UTC |
| 5993323 | Gus Hahn-Powell | 04 September 2016, 05:32:42 UTC | Even more debugging | 04 September 2016, 05:32:42 UTC |
| 70cfc93 | Gus Hahn-Powell | 04 September 2016, 05:20:28 UTC | More debugging | 04 September 2016, 05:20:28 UTC |
| b3c4c92 | Gus Hahn-Powell | 04 September 2016, 05:13:51 UTC | Debugging | 04 September 2016, 05:13:51 UTC |
| 0d3d02d | Mihai Surdeanu | 03 September 2016, 22:53:41 UTC | Merge pull request #344 from clulab/issue332 Issue332 | 03 September 2016, 22:53:41 UTC |
| 40915d5 | Mihai Surdeanu | 03 September 2016, 22:25:08 UTC | Temporary fix for the failing coref test. | 03 September 2016, 22:25:08 UTC |
| aada036 | Tom Hicks | 03 September 2016, 21:39:39 UTC | Merge pull request #345 from clulab/plain-text-reader Plain text reader | 03 September 2016, 21:39:39 UTC |
| 59542f1 | Gus Hahn-Powell | 03 September 2016, 21:00:08 UTC | resolves #343 | 03 September 2016, 21:00:08 UTC |
| dda2c4a | Gus Hahn-Powell | 03 September 2016, 20:59:30 UTC | Construct FriesEntry from paperID and text | 03 September 2016, 20:59:30 UTC |
| 0781afe | Mihai Surdeanu | 03 September 2016, 20:38:04 UTC | Controllers and controlleds in regs can not have overlapping spans. | 03 September 2016, 20:38:04 UTC |
| e3748d6 | Mihai Surdeanu | 03 September 2016, 03:20:46 UTC | Commented out the path overlap. | 03 September 2016, 03:20:46 UTC |
| 0f01dbb | Mihai Surdeanu | 02 September 2016, 22:50:04 UTC | Better grammars! | 02 September 2016, 22:50:04 UTC |
| b18ba9d | Tom Hicks | 02 September 2016, 03:36:34 UTC | Merge pull request #341 from clulab/usecases New use cases for CMU | 02 September 2016, 03:36:34 UTC |
| f0a5934 | Mihai Surdeanu | 02 September 2016, 02:36:26 UTC | Added patterns for "early" activations. Improved some rules. More tests. | 02 September 2016, 02:36:26 UTC |
| ac09250 | Tom Hicks | 01 September 2016, 20:42:15 UTC | Update CHANGES file to reflect Processors version 5.9.5. | 01 September 2016, 20:42:15 UTC |
| 2e9f6ac | Tom Hicks | 01 September 2016, 20:29:01 UTC | Update build file to use Processors version 5.9.5. | 01 September 2016, 20:29:01 UTC |
| 0c6c9ea | Mihai Surdeanu | 01 September 2016, 20:05:11 UTC | Renamed use cases for consistency. | 01 September 2016, 20:05:11 UTC |
| 7134699 | Mihai Surdeanu | 01 September 2016, 18:45:12 UTC | Added 3c and 3d | 01 September 2016, 18:45:12 UTC |
| 18ac4fa | Mihai Surdeanu | 01 September 2016, 18:19:38 UTC | 3b | 01 September 2016, 18:19:38 UTC |
| bf82a78 | Mihai Surdeanu | 01 September 2016, 18:09:08 UTC | Added use case 3a | 01 September 2016, 18:09:08 UTC |
| 6ff6fff | Mihai Surdeanu | 01 September 2016, 17:38:08 UTC | Added tests for XREF*. Commented out for now. | 01 September 2016, 17:38:08 UTC |
| 3e5177f | Mihai Surdeanu | 01 September 2016, 02:04:00 UTC | Merge branch 'master' of github.com:clulab/reach | 01 September 2016, 02:04:00 UTC |
| e623792 | Mihai Surdeanu | 01 September 2016, 02:02:31 UTC | Added knockout as extra trigger for polarity reversal. | 01 September 2016, 02:02:31 UTC |
| 41cd0ce | Mihai Surdeanu | 01 September 2016, 02:00:21 UTC | Merge pull request #336 from clulab/issue187 Issue187 | 01 September 2016, 02:00:21 UTC |
| e636410 | Dane Bell | 31 August 2016, 17:26:37 UTC | Disable over-generating templatic simple event rule | 31 August 2016, 17:26:37 UTC |
| af0eb71 | Dane Bell | 30 August 2016, 23:35:20 UTC | Merge branch 'master' into issue187 | 30 August 2016, 23:35:20 UTC |
| 0aa18cf | Mihai Surdeanu | 30 August 2016, 22:20:39 UTC | Improved lexicon for polarity reversal. | 30 August 2016, 22:20:39 UTC |
| c706385 | Mihai Surdeanu | 30 August 2016, 17:55:53 UTC | Merge branch 'master' of github.com:clulab/reach | 30 August 2016, 17:55:53 UTC |
| b4ad618 | Mihai Surdeanu | 30 August 2016, 17:55:41 UTC | usecase2 | 30 August 2016, 17:55:41 UTC |
| 6097513 | Tom Hicks | 29 August 2016, 23:54:41 UTC | Merge pull request #333 from clulab/assembly-tsv-fix Remove illicit whitespace chars from output | 29 August 2016, 23:54:41 UTC |
| eb297e2 | Gus Hahn-Powell | 29 August 2016, 22:26:17 UTC | Remove illicit whitespace chars from output | 29 August 2016, 22:26:17 UTC |
| 96b544f | Mihai Surdeanu | 26 August 2016, 16:02:53 UTC | Close io.Source all the time! | 26 August 2016, 16:02:53 UTC |
| 8187caa | Mihai Surdeanu | 25 August 2016, 21:33:36 UTC | Handle NXML errors robustly | 25 August 2016, 21:33:36 UTC |
| 617251b | Mihai Surdeanu | 25 August 2016, 21:17:11 UTC | Added indexing for pub year to NxmlIndexer | 25 August 2016, 21:17:11 UTC |
| 3865344 | Mihai Surdeanu | 24 August 2016, 21:41:03 UTC | Merge pull request #329 from clulab/nxmlindexer Add hoc solution to text preprocessing for the nxml indexer | 24 August 2016, 21:41:03 UTC |
| ef617a0 | Enrique Noriega | 24 August 2016, 21:36:27 UTC | Pending comments | 24 August 2016, 21:36:27 UTC |
| 07c28df | Enrique Noriega | 24 August 2016, 21:35:40 UTC | Pending comments | 24 August 2016, 21:35:40 UTC |
| 54e09cf | Enrique Noriega | 24 August 2016, 21:22:20 UTC | Add hoc solution to text preprocessing for the nxml indexer | 24 August 2016, 21:22:20 UTC |
| 86ddb11 | Mihai Surdeanu | 23 August 2016, 22:36:34 UTC | Added the TB use case. | 23 August 2016, 22:36:34 UTC |
| 59d4785 | Tom Hicks | 21 August 2016, 22:20:28 UTC | Merge pull request #323 from clulab/issue314 Update build to use ai.lum 0.0.6: fixes NXML reader problems. | 21 August 2016, 22:20:28 UTC |
| ec7d754 | Tom Hicks | 21 August 2016, 21:06:54 UTC | Update build to use ai.lum 0.0.6: fixes NXML reader problems. | 21 August 2016, 21:06:54 UTC |
| d230c10 | Mihai Surdeanu | 19 August 2016, 12:10:22 UTC | Merge pull request #320 from clulab/hansbug Hansbug | 19 August 2016, 12:10:22 UTC |
| 749cd34 | Tom Hicks | 19 August 2016, 10:40:59 UTC | Merge latest 'master' into hansbug | 19 August 2016, 10:40:59 UTC |
| ebebbdc | Tom Hicks | 19 August 2016, 10:21:26 UTC | Rewrite order dependent tests of FRIES outputter. | 19 August 2016, 10:21:26 UTC |
| dfb7acf | Gus Hahn-Powell | 19 August 2016, 04:45:05 UTC | Don't add event's args to top-level frame list | 19 August 2016, 04:45:05 UTC |
| 42f2801 | Gus Hahn-Powell | 19 August 2016, 04:33:14 UTC | check eventsDone | 19 August 2016, 04:33:14 UTC |
| 90c8e3a | Tom Hicks | 19 August 2016, 01:17:12 UTC | Sort mention maps by sentence order. Undo event id. | 19 August 2016, 01:17:12 UTC |
| 792098d | Tom Hicks | 18 August 2016, 23:42:31 UTC | Cleanups. | 18 August 2016, 23:42:31 UTC |
| 01b8cc0 | Gus Hahn-Powell | 18 August 2016, 22:34:38 UTC | Used EMaps for model output | 18 August 2016, 22:34:38 UTC |
| 2b99cd5 | Tom Hicks | 18 August 2016, 19:09:42 UTC | Handle event and relation mentions together. | 18 August 2016, 19:09:42 UTC |
| bd2690c | Gus Hahn-Powell | 18 August 2016, 18:13:51 UTC | Don't need BioMentions | 18 August 2016, 18:13:51 UTC |
| ab1d025 | Gus Hahn-Powell | 18 August 2016, 17:54:58 UTC | .toBioMention fix | 18 August 2016, 17:54:58 UTC |
| c8b5897 | Gus Hahn-Powell | 18 August 2016, 17:45:23 UTC | Merge branch 'hansbug' of github.com:clulab/reach into hansbug | 18 August 2016, 17:45:23 UTC |
| 355995b | Gus Hahn-Powell | 18 August 2016, 17:44:32 UTC | Use processors v5.9.4 | 18 August 2016, 17:44:32 UTC |
| 57bb34b | Tom Hicks | 18 August 2016, 17:44:06 UTC | Update build file to match master and use processors 5.9.4. | 18 August 2016, 17:44:06 UTC |
| aeca369 | Gus Hahn-Powell | 18 August 2016, 17:43:43 UTC | Use generic procedure for populating EMaps | 18 August 2016, 17:43:43 UTC |
| 647aad7 | Gus Hahn-Powell | 18 August 2016, 17:37:35 UTC | Changes to mkMapEntries mk -> make Take a Seq[BioMention] | 18 August 2016, 17:37:35 UTC |
| 51d6346 | Gus Hahn-Powell | 18 August 2016, 17:26:53 UTC | mkEventId -> mkEntityId | 18 August 2016, 17:26:53 UTC |
| cf192d0 | Gus Hahn-Powell | 18 August 2016, 17:16:57 UTC | More generic method for populating maps currently unused, but designed to merge mkEntityMapEntry and mkEventMapEntry | 18 August 2016, 17:16:57 UTC |
| 166e5d1 | Gus Hahn-Powell | 18 August 2016, 17:16:18 UTC | Handle args of a Complex | 18 August 2016, 17:16:18 UTC |
| 404ca18 | Tom Hicks | 18 August 2016, 01:07:03 UTC | Update to use Processors 5.9.4. Update CHANGES file. | 18 August 2016, 01:07:03 UTC |
| 3777e05 | Tom Hicks | 17 August 2016, 22:48:09 UTC | Fix first failing test as a test of fix. | 17 August 2016, 22:48:09 UTC |
| a63b210 | Tom Hicks | 17 August 2016, 13:03:43 UTC | Recursively process relation mention arguments of nested events. | 17 August 2016, 13:03:43 UTC |
| 388d352 | Tom Hicks | 17 August 2016, 09:44:02 UTC | Recursively process arguments of nested events. | 17 August 2016, 09:44:02 UTC |
| 4bd4be0 | Tom Hicks | 17 August 2016, 07:10:29 UTC | Better argument processing loop in makeEventMention. | 17 August 2016, 07:10:29 UTC |
