2f11a67 | Tadgh | 06 July 2020, 18:53:40 UTC | change test name | 06 July 2020, 18:53:40 UTC |
be42929 | Tadgh | 06 July 2020, 18:46:20 UTC | Change string name | 06 July 2020, 18:46:20 UTC |
84da932 | Tadgh | 06 July 2020, 18:36:47 UTC | fix test | 06 July 2020, 18:36:47 UTC |
b786006 | jamesagnew | 06 July 2020, 17:46:30 UTC | Credit for #1878 | 06 July 2020, 17:46:30 UTC |
1266619 | Joel Schneider (NMDP) | 06 July 2020, 17:43:51 UTC | quick fix to avoid including duplicate copies of hapi-fhir-testpage-overlay classes (#1878) | 06 July 2020, 17:43:51 UTC |
11ad41d | jamesagnew | 06 July 2020, 09:52:40 UTC | Credit for #1893 | 06 July 2020, 09:52:40 UTC |
df133d1 | Alexander Lukyanchikov | 06 July 2020, 09:50:44 UTC | #1892 Add support for :of-type Token Modifier (#1893) | 06 July 2020, 09:50:44 UTC |
9813c69 | jamesagnew | 06 July 2020, 09:45:35 UTC | Merge branch 'ConsultingMD-atlas-grand-rounds' | 06 July 2020, 09:45:35 UTC |
2b5c834 | jamesagnew | 06 July 2020, 09:45:19 UTC | Merge branch 'atlas-grand-rounds' of https://github.com/ConsultingMD/hapi-fhir into ConsultingMD-atlas-grand-rounds | 06 July 2020, 09:45:19 UTC |
4c883cf | Sumeet Chhetri | 06 July 2020, 09:43:20 UTC | Added an entry for Ohum/FHIR (#1930) | 06 July 2020, 09:43:20 UTC |
4b1546f | James Agnew | 06 July 2020, 09:29:48 UTC | Add support for ISO 3166 to validator (#1967) * Add ISO 3166 support * Add support for ISO-3166 * Add changelog * Test fixes | 06 July 2020, 09:29:48 UTC |
6fb6675 | James Agnew | 05 July 2020, 23:59:21 UTC | Resolve validation errors to ValueSet with UCUM (#1948) * Add tests for validation errors * Work on validation errors * Bump core version * Fix validation errors * Test fixes * Add changelog * Test fix * Test fix * Test fix | 05 July 2020, 23:59:21 UTC |
9e19b87 | jamesagnew | 04 July 2020, 23:32:40 UTC | Fix build | 04 July 2020, 23:32:40 UTC |
f356c7c | James Agnew | 04 July 2020, 22:28:16 UTC | Migrate to JUnit5 (#1952) * Work on junit * Work on junit 5 * Work on junit 5 * Bump errorprone vcersion * Work on tests * Junit 5 tweaks * Fixes * Work on tests * Work on junit5 * Work on tests * Test fixes * Work on junit5 * Test work * Get junit5 working * Test fix * Work on tests * WOrk on tests * Work on tests * fixes * Compile fix * One more tweak * Compile fix * Add changelog * Fix compile error * Compile fix | 04 July 2020, 22:28:16 UTC |
290577f | James Agnew | 03 July 2020, 21:54:25 UTC | Remove unnecessary type predicate (#1963) * Remove unnecessary type predicate * Add changelog | 03 July 2020, 21:54:25 UTC |
e23e222 | IanMMarshall | 03 July 2020, 20:29:34 UTC | Merge pull request #1960 from jamesagnew/im_20200630_code_system_load Accidentally merged pull request before pushing changes from code review | 03 July 2020, 20:29:34 UTC |
b1ff6cb | ianmarshall | 03 July 2020, 18:25:24 UTC | Changes from code review | 03 July 2020, 18:25:24 UTC |
63bf9cc | Tadgh | 03 July 2020, 18:19:51 UTC | Merge pull request #1961 from jamesagnew/bulk-intermittent Bulk intermittent bug | 03 July 2020, 18:19:51 UTC |
4ff63e2 | Tadgh | 03 July 2020, 17:21:04 UTC | Remove unnecessary logging. Spring batch already logs this | 03 July 2020, 17:21:04 UTC |
d09f410 | Tadgh | 03 July 2020, 17:15:57 UTC | Tidy logging, increase timeout to 120 because clocks | 03 July 2020, 17:15:57 UTC |
a84a416 | Tadgh | 03 July 2020, 17:08:34 UTC | Increase awaitility timeout for bulk export of ALL resources | 03 July 2020, 17:08:34 UTC |
4e5ca2e | ianmarshall | 03 July 2020, 17:08:11 UTC | Changes from code review | 03 July 2020, 17:08:11 UTC |
0e88506 | IanMMarshall | 03 July 2020, 17:06:42 UTC | Merge pull request #1958 from jamesagnew/im_20200630_code_system_load Im 20200630 code system load | 03 July 2020, 17:06:42 UTC |
38cb526 | Tadgh | 03 July 2020, 16:40:52 UTC | Add logging | 03 July 2020, 16:40:52 UTC |
46abdfa | ianmarshall | 02 July 2020, 17:29:17 UTC | Merge remote-tracking branch 'remotes/origin/master' into im_20200630_code_system_load | 02 July 2020, 17:29:17 UTC |
aa1e46f | jamesagnew | 02 July 2020, 17:09:49 UTC | Fix public hapi test server | 02 July 2020, 17:09:49 UTC |
ef86d26 | jamesagnew | 02 July 2020, 16:07:02 UTC | License header updates | 02 July 2020, 16:07:02 UTC |
a59b25c | jamesagnew | 02 July 2020, 16:06:33 UTC | Fix startup failure on hapi.fhir.org | 02 July 2020, 16:06:33 UTC |
557f732 | ianmarshall | 02 July 2020, 16:03:15 UTC | Cleanup and improved Unit tests. | 02 July 2020, 16:03:15 UTC |
fb0029c | dependabot[bot] | 01 July 2020, 22:30:07 UTC | Bump mysql-connector-java (#1956) Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 6.0.5 to 8.0.16. - [Release notes](https://github.com/mysql/mysql-connector-j/releases) - [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES) - [Commits](https://github.com/mysql/mysql-connector-j/compare/6.0.5...8.0.16) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 July 2020, 22:30:07 UTC |
ef4b79d | dependabot[bot] | 01 July 2020, 22:29:57 UTC | Bump mysql-connector-java in /hapi-fhir-jpaserver-migrate (#1955) Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 6.0.5 to 8.0.16. - [Release notes](https://github.com/mysql/mysql-connector-j/releases) - [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES) - [Commits](https://github.com/mysql/mysql-connector-j/compare/6.0.5...8.0.16) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 July 2020, 22:29:57 UTC |
d1ceb28 | dependabot[bot] | 01 July 2020, 22:29:45 UTC | Bump mysql-connector-java (#1954) Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 5.1.40 to 8.0.16. - [Release notes](https://github.com/mysql/mysql-connector-j/releases) - [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES) - [Commits](https://github.com/mysql/mysql-connector-j/compare/5.1.40...8.0.16) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 July 2020, 22:29:45 UTC |
714bd62 | Ken Stevens | 30 June 2020, 21:36:54 UTC | Empi 70 phonetic indexing (#1941) * start with failing test * test passes with fixmes * javadoc and config * pre-review cleanup * generalize encoding * test passes, but indexing needs to be optimized * test passes, but indexing needs to be optimized * step 1 of optimization. big refactor of all predicates * step 2 of optimization: determine phonetic encoder at time of RuntimeSearchParam creation * integrated new phonetic encoders into empi * phonetic search implemented * IT passes * pre-review cleanup * final pre-review cleanup * final pre-review cleanup * Fix compile error Co-authored-by: James Agnew <jamesagnew@gmail.com> | 30 June 2020, 21:36:54 UTC |
bb17688 | jamesagnew | 30 June 2020, 21:03:16 UTC | Add test for #1780 | 30 June 2020, 21:03:16 UTC |
349c752 | jamesagnew | 30 June 2020, 19:13:38 UTC | License headers | 30 June 2020, 19:13:38 UTC |
0788e79 | ianmarshall | 30 June 2020, 19:07:14 UTC | Fix to address deferred save of TermConcept when code system version changes prior to save. | 30 June 2020, 19:07:14 UTC |
2cdef05 | jamesagnew | 30 June 2020, 18:31:40 UTC | Missed commit on #1951 Squashed commit of the following: commit f820135996bf25d13483012074b38878085e2384 Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Jun 30 14:29:24 2020 -0400 Address review comments commit 11c4f9defba581132a340a2e5f189a934e829b67 Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Jun 30 09:38:16 2020 -0400 Fix LGTM warning commit b650fdb9ea7d09bdc1f9f811727e6d23bbf153ce Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Jun 30 09:20:52 2020 -0400 Test fix commit 6ebcceeb5ca314313c197ff8543a87343e82a7a1 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 18:49:01 2020 -0400 Add changelog commit 4a1d7383b0c7d119acf0f97866be902c61cff0f5 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 18:46:52 2020 -0400 Bundle transmission commit 88bd4abf0cf105765e622a2fedd18b265ec8fbbe Merge: 7cde945281 25fc747b9f Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 17:31:23 2020 -0400 Merge branch 'master' into ja_20200617_subscription_send_bundles commit 7cde945281890ce34023a1e954a24503f2741809 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 17:10:33 2020 -0400 Work on seed bundles commit ed2e62752efc828c16e0ca772c76ca1428610777 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 09:39:10 2020 -0400 Work on subscriptions commit 52addcff5916ee3f32b245f464dfa13f4e1c6ac8 Merge: 64a9eaa4de bf8de84801 Author: jamesagnew <jamesagnew@gmail.com> Date: Sat Jun 27 18:09:23 2020 -0400 Merge branch 'master' into ja_20200617_subscription_send_bundles commit 64a9eaa4de38b5b16c0b5d8f3727634c897f06de Author: jamesagnew <jamesagnew@gmail.com> Date: Wed Jun 17 18:32:17 2020 -0400 Start work commit f74eba5397d40f948970c0fc77ef721b021de46a Author: jamesagnew <jamesagnew@gmail.com> Date: Wed Jun 17 18:28:18 2020 -0400 Terser should create correct Enumeration on create | 30 June 2020, 18:31:40 UTC |
fa4bbe3 | James Agnew | 30 June 2020, 18:29:09 UTC | Allow search criteria as subscription delivery mechanism (#1951) * Terser should create correct Enumeration on create * Start work * Work on subscriptions * Work on seed bundles * Bundle transmission * Add changelog * Test fix * Fix LGTM warning | 30 June 2020, 18:29:09 UTC |
cd69a14 | James Agnew | 30 June 2020, 15:58:29 UTC | Create codeql-analysis.yml | 30 June 2020, 15:58:29 UTC |
072f3a4 | James Agnew | 29 June 2020, 22:22:27 UTC | Use read partition for finding update candidate on upsert (#1945) * Use read partition for finding update candidate on upsert * Add changelog | 29 June 2020, 22:22:27 UTC |
25fc747 | Tadgh | 29 June 2020, 20:23:52 UTC | Merge pull request #1950 from jamesagnew/hotfix-test-import Hotfix test import | 29 June 2020, 20:23:52 UTC |
bb7d889 | jamesagnew | 29 June 2020, 19:15:51 UTC | License header updates | 29 June 2020, 19:15:51 UTC |
8df0448 | Tadgh | 29 June 2020, 18:04:03 UTC | Fix import | 29 June 2020, 18:04:03 UTC |
4e789fb | Tadgh | 29 June 2020, 18:01:38 UTC | Fix import error | 29 June 2020, 18:01:38 UTC |
e365e64 | Tadgh | 28 June 2020, 23:10:43 UTC | Merge pull request #1906 from jamesagnew/spring-batch-integration Spring batch integration | 28 June 2020, 23:10:43 UTC |
be23eb3 | jamesagnew | 27 June 2020, 22:06:37 UTC | Move the flush into the existing transaction | 27 June 2020, 22:06:37 UTC |
bf8de84 | jamesagnew | 26 June 2020, 23:25:36 UTC | License header | 26 June 2020, 23:25:36 UTC |
dac5168 | jamesagnew | 26 June 2020, 22:31:13 UTC | Move validation settings bean | 26 June 2020, 22:31:13 UTC |
16039af | Tadgh | 26 June 2020, 20:15:31 UTC | Fix up samlpe starters | 26 June 2020, 20:15:31 UTC |
8f6aee6 | Tadgh | 26 June 2020, 19:22:23 UTC | Fix batch project to now use an async task launcher | 26 June 2020, 19:22:23 UTC |
b31b665 | Tadgh | 26 June 2020, 18:51:01 UTC | Add async to the job launcher, fix test to reflect this | 26 June 2020, 18:51:01 UTC |
0b62259 | Tadgh | 26 June 2020, 17:13:03 UTC | Muck with initial loading to allow EMF and platformtransactionmanager to be available | 26 June 2020, 17:13:03 UTC |
ceeff0c | IanMMarshall | 26 June 2020, 00:05:24 UTC | Merge pull request #1942 from jamesagnew/im_20200619_mariadb_expand_valueset_fix Im 20200619 mariadb expand valueset fix | 26 June 2020, 00:05:24 UTC |
13bbdde | Tadgh | 25 June 2020, 22:38:15 UTC | pipeline fun | 25 June 2020, 22:38:15 UTC |
484f390 | Tadgh | 25 June 2020, 20:00:59 UTC | Fix batch test | 25 June 2020, 20:00:59 UTC |
7322760 | Ken Stevens | 25 June 2020, 19:27:46 UTC | Merge remote-tracking branch 'origin/spring-batch-integration' into spring-batch-integration | 25 June 2020, 19:27:46 UTC |
c11b6ee | Ken Stevens | 25 June 2020, 19:27:31 UTC | back out Tx wrap use qualifier | 25 June 2020, 19:27:31 UTC |
21567fd | Tadgh | 25 June 2020, 18:42:17 UTC | Tidy await | 25 June 2020, 18:42:17 UTC |
ed155e7 | Tadgh | 25 June 2020, 17:37:02 UTC | wip | 25 June 2020, 17:37:02 UTC |
1d9641a | Tadgh | 25 June 2020, 17:28:03 UTC | fix empilinks | 25 June 2020, 17:28:03 UTC |
93da042 | Ken Stevens | 25 June 2020, 15:14:42 UTC | fix empi tests so they work with Spring Batch (all but one test fixed) | 25 June 2020, 15:14:42 UTC |
e51c5b5 | Tadgh | 25 June 2020, 04:03:02 UTC | change transactionmanager name so it doesnt shadow the batchprocessing one | 25 June 2020, 04:03:02 UTC |
06e1368 | Tadgh | 25 June 2020, 04:00:45 UTC | Re-add comment | 25 June 2020, 04:00:45 UTC |
6875740 | Tadgh | 25 June 2020, 03:15:47 UTC | Merge branch 'spring-batch-integration' of github.com:jamesagnew/hapi-fhir into spring-batch-integration | 25 June 2020, 03:15:47 UTC |
3da4ad2 | Tadgh | 25 June 2020, 03:00:52 UTC | undoes merge issues | 25 June 2020, 03:00:52 UTC |
a69c147 | Ken Stevens | 25 June 2020, 02:07:38 UTC | Merge remote-tracking branch 'remotes/origin/master' into spring-batch-integration | 25 June 2020, 02:07:38 UTC |
55ff15d | ianmarshall | 24 June 2020, 21:43:34 UTC | Merge remote-tracking branch 'remotes/origin/master' into im_20200619_mariadb_expand_valueset_fix | 24 June 2020, 21:43:34 UTC |
053094f | ianmarshall | 24 June 2020, 21:42:46 UTC | Apply recent fixes for MySQL migration tasks to MariaDB as well. | 24 June 2020, 21:42:46 UTC |
571589d | Tadgh | 24 June 2020, 20:46:13 UTC | Merge branch 'master' into spring-batch-integration | 24 June 2020, 20:46:13 UTC |
64dbd03 | Tadgh | 24 June 2020, 20:16:11 UTC | Increase min thread count for batch. Add new which waits for all bulkexport jobs to be done | 24 June 2020, 20:16:11 UTC |
5e3e7c4 | ianmarshall | 24 June 2020, 19:48:06 UTC | Changes to support valueset expansion with Elasticsearch. | 24 June 2020, 19:48:06 UTC |
99fe66b | Tadgh | 24 June 2020, 18:52:05 UTC | Fix pom to use project.version | 24 June 2020, 18:52:05 UTC |
a774092 | Tadgh | 24 June 2020, 18:02:52 UTC | Specify version | 24 June 2020, 18:02:52 UTC |
59659b2 | Tadgh | 24 June 2020, 17:11:30 UTC | Move order of modules | 24 June 2020, 17:11:30 UTC |
2bd1780 | Tadgh | 24 June 2020, 16:46:56 UTC | Update changelog | 24 June 2020, 16:46:56 UTC |
38a2b00 | Ken Stevens | 24 June 2020, 13:12:56 UTC | Empi 69 and candidates (#1936) broaden empi blocking searches to support and searchparams as well as ors | 24 June 2020, 13:12:56 UTC |
4cccc98 | Tadgh | 23 June 2020, 23:29:36 UTC | nop for CI | 23 June 2020, 23:29:36 UTC |
bb7a773 | Tadgh | 23 June 2020, 23:02:41 UTC | Merge branch 'master' into spring-batch-integration | 23 June 2020, 23:02:41 UTC |
e65c264 | James Agnew | 23 June 2020, 21:58:47 UTC | Support double _has expressions (#1939) * Support nested _has queries * Add changelog | 23 June 2020, 21:58:47 UTC |
6825d2f | James Agnew | 23 June 2020, 20:26:04 UTC | Reduce DB roundtrips for revincludes (#1937) * Reduce DB roundtrips for revincludes * Add changelog | 23 June 2020, 20:26:04 UTC |
f88298a | James Agnew | 23 June 2020, 15:35:26 UTC | Remote terminology service enhancements (#1934) * Remote terminology service enhancements * Add changelog | 23 June 2020, 15:35:26 UTC |
67d363f | James Agnew | 23 June 2020, 15:35:10 UTC | Add setting to allow validation of reference targets (#1932) * Add setting to allow validation of reference targets * Add changelog * Add changelog * License headers * Plugin version bump * Experiment with Maven build | 23 June 2020, 15:35:10 UTC |
e849ff2 | Diederik Muylwyk | 22 June 2020, 22:30:22 UTC | Merge pull request #1933 from jamesagnew/dm-20200622-fix-valueset-expand-with-offset-and-count Fix ValueSet$expand with offset and count parameters. | 22 June 2020, 22:30:22 UTC |
ce0cb89 | Diederik Muylwyk | 22 June 2020, 21:22:21 UTC | Improve tests. | 22 June 2020, 21:22:21 UTC |
ced376f | Diederik Muylwyk | 22 June 2020, 21:02:08 UTC | Add changelog entry; fix typo. | 22 June 2020, 21:02:08 UTC |
314df43 | Diederik Muylwyk | 22 June 2020, 20:52:52 UTC | BaseValidationSupportWrapper.expandValueSet(...) and ValidationSupportChain.expandValueSet(...) were incorrectly replacing expansion options (i.e. offset and count) with null. | 22 June 2020, 20:52:52 UTC |
5bf1e94 | ianmarshall | 19 June 2020, 21:26:45 UTC | Fix to accomodate MySQL and MariaDB. | 19 June 2020, 21:26:45 UTC |
0e86732 | Tadgh | 19 June 2020, 21:03:22 UTC | Add changelog | 19 June 2020, 21:03:22 UTC |
46c00f4 | James Agnew | 18 June 2020, 20:55:11 UTC | Update for Loinc 2.68 (#1917) * Work on loinc updates * Work on loinc upload * Clean up CLI config * Add changelog * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/TerminologyUploaderProviderR4Test.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincUploadPropertiesEnum.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Clean up imports * LOINC fixes * Loinc loader fixes Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> | 18 June 2020, 20:55:11 UTC |
4119cbb | jamesagnew | 17 June 2020, 22:28:18 UTC | Terser should create correct Enumeration on create | 17 June 2020, 22:32:27 UTC |
abf0a00 | IanMMarshall | 17 June 2020, 18:21:17 UTC | Merge pull request #1928 from jamesagnew/im_20200615_mysql_migration_syntax Im 20200615 mysql migration syntax | 17 June 2020, 18:21:17 UTC |
b654006 | James Agnew | 17 June 2020, 18:04:12 UTC | Improve TX scoping for validation (#1925) * Improve TX scoping for validation * Test fix * Test fix * Some cleanup * Test fixes * Test fix | 17 June 2020, 18:04:12 UTC |
5b120ee | ianmarshall | 17 June 2020, 15:57:37 UTC | Removed unused code and import statement. | 17 June 2020, 15:57:37 UTC |
5d22af4 | ianmarshall | 17 June 2020, 15:56:20 UTC | Added tests for cases where a renamed column is used in a Foreign Key constraint. | 17 June 2020, 15:56:20 UTC |
eb990e9 | ianmarshall | 17 June 2020, 13:05:53 UTC | Enhance added JUnit test. | 17 June 2020, 13:05:53 UTC |
cc7ed1b | ianmarshall | 16 June 2020, 21:21:17 UTC | Cleanup JUnit test. | 16 June 2020, 21:21:17 UTC |
2d857f4 | ianmarshall | 16 June 2020, 21:13:00 UTC | Fix broken JUnit. | 16 June 2020, 21:13:00 UTC |
0bd8084 | ianmarshall | 16 June 2020, 20:05:10 UTC | Additional fixes to migration tasks for MySQL. | 16 June 2020, 20:05:10 UTC |
d32ad74 | Tadgh | 16 June 2020, 04:49:34 UTC | some renaming | 16 June 2020, 04:49:34 UTC |
9222fa3 | Tadgh | 15 June 2020, 22:17:25 UTC | change transaction call | 15 June 2020, 22:17:25 UTC |