https://github.com/jamesagnew/hapi-fhir

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Revision Author Date Message Commit Date
2f11a67 change test name 06 July 2020, 18:53:40 UTC
be42929 Change string name 06 July 2020, 18:46:20 UTC
84da932 fix test 06 July 2020, 18:36:47 UTC
b786006 Credit for #1878 06 July 2020, 17:46:30 UTC
1266619 quick fix to avoid including duplicate copies of hapi-fhir-testpage-overlay classes (#1878) 06 July 2020, 17:43:51 UTC
11ad41d Credit for #1893 06 July 2020, 09:52:40 UTC
df133d1 #1892 Add support for :of-type Token Modifier (#1893) 06 July 2020, 09:50:44 UTC
9813c69 Merge branch 'ConsultingMD-atlas-grand-rounds' 06 July 2020, 09:45:35 UTC
2b5c834 Merge branch 'atlas-grand-rounds' of https://github.com/ConsultingMD/hapi-fhir into ConsultingMD-atlas-grand-rounds 06 July 2020, 09:45:19 UTC
4c883cf Added an entry for Ohum/FHIR (#1930) 06 July 2020, 09:43:20 UTC
4b1546f Add support for ISO 3166 to validator (#1967) * Add ISO 3166 support * Add support for ISO-3166 * Add changelog * Test fixes 06 July 2020, 09:29:48 UTC
6fb6675 Resolve validation errors to ValueSet with UCUM (#1948) * Add tests for validation errors * Work on validation errors * Bump core version * Fix validation errors * Test fixes * Add changelog * Test fix * Test fix * Test fix 05 July 2020, 23:59:21 UTC
9e19b87 Fix build 04 July 2020, 23:32:40 UTC
f356c7c Migrate to JUnit5 (#1952) * Work on junit * Work on junit 5 * Work on junit 5 * Bump errorprone vcersion * Work on tests * Junit 5 tweaks * Fixes * Work on tests * Work on junit5 * Work on tests * Test fixes * Work on junit5 * Test work * Get junit5 working * Test fix * Work on tests * WOrk on tests * Work on tests * fixes * Compile fix * One more tweak * Compile fix * Add changelog * Fix compile error * Compile fix 04 July 2020, 22:28:16 UTC
290577f Remove unnecessary type predicate (#1963) * Remove unnecessary type predicate * Add changelog 03 July 2020, 21:54:25 UTC
e23e222 Merge pull request #1960 from jamesagnew/im_20200630_code_system_load Accidentally merged pull request before pushing changes from code review 03 July 2020, 20:29:34 UTC
b1ff6cb Changes from code review 03 July 2020, 18:25:24 UTC
63bf9cc Merge pull request #1961 from jamesagnew/bulk-intermittent Bulk intermittent bug 03 July 2020, 18:19:51 UTC
4ff63e2 Remove unnecessary logging. Spring batch already logs this 03 July 2020, 17:21:04 UTC
d09f410 Tidy logging, increase timeout to 120 because clocks 03 July 2020, 17:15:57 UTC
a84a416 Increase awaitility timeout for bulk export of ALL resources 03 July 2020, 17:08:34 UTC
4e5ca2e Changes from code review 03 July 2020, 17:08:11 UTC
0e88506 Merge pull request #1958 from jamesagnew/im_20200630_code_system_load Im 20200630 code system load 03 July 2020, 17:06:42 UTC
38cb526 Add logging 03 July 2020, 16:40:52 UTC
46abdfa Merge remote-tracking branch 'remotes/origin/master' into im_20200630_code_system_load 02 July 2020, 17:29:17 UTC
aa1e46f Fix public hapi test server 02 July 2020, 17:09:49 UTC
ef86d26 License header updates 02 July 2020, 16:07:02 UTC
a59b25c Fix startup failure on hapi.fhir.org 02 July 2020, 16:06:33 UTC
557f732 Cleanup and improved Unit tests. 02 July 2020, 16:03:15 UTC
fb0029c Bump mysql-connector-java (#1956) Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 6.0.5 to 8.0.16. - [Release notes](https://github.com/mysql/mysql-connector-j/releases) - [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES) - [Commits](https://github.com/mysql/mysql-connector-j/compare/6.0.5...8.0.16) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 01 July 2020, 22:30:07 UTC
ef4b79d Bump mysql-connector-java in /hapi-fhir-jpaserver-migrate (#1955) Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 6.0.5 to 8.0.16. - [Release notes](https://github.com/mysql/mysql-connector-j/releases) - [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES) - [Commits](https://github.com/mysql/mysql-connector-j/compare/6.0.5...8.0.16) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 01 July 2020, 22:29:57 UTC
d1ceb28 Bump mysql-connector-java (#1954) Bumps [mysql-connector-java](https://github.com/mysql/mysql-connector-j) from 5.1.40 to 8.0.16. - [Release notes](https://github.com/mysql/mysql-connector-j/releases) - [Changelog](https://github.com/mysql/mysql-connector-j/blob/release/8.0/CHANGES) - [Commits](https://github.com/mysql/mysql-connector-j/compare/5.1.40...8.0.16) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 01 July 2020, 22:29:45 UTC
714bd62 Empi 70 phonetic indexing (#1941) * start with failing test * test passes with fixmes * javadoc and config * pre-review cleanup * generalize encoding * test passes, but indexing needs to be optimized * test passes, but indexing needs to be optimized * step 1 of optimization. big refactor of all predicates * step 2 of optimization: determine phonetic encoder at time of RuntimeSearchParam creation * integrated new phonetic encoders into empi * phonetic search implemented * IT passes * pre-review cleanup * final pre-review cleanup * final pre-review cleanup * Fix compile error Co-authored-by: James Agnew <jamesagnew@gmail.com> 30 June 2020, 21:36:54 UTC
bb17688 Add test for #1780 30 June 2020, 21:03:16 UTC
349c752 License headers 30 June 2020, 19:13:38 UTC
0788e79 Fix to address deferred save of TermConcept when code system version changes prior to save. 30 June 2020, 19:07:14 UTC
2cdef05 Missed commit on #1951 Squashed commit of the following: commit f820135996bf25d13483012074b38878085e2384 Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Jun 30 14:29:24 2020 -0400 Address review comments commit 11c4f9defba581132a340a2e5f189a934e829b67 Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Jun 30 09:38:16 2020 -0400 Fix LGTM warning commit b650fdb9ea7d09bdc1f9f811727e6d23bbf153ce Author: jamesagnew <jamesagnew@gmail.com> Date: Tue Jun 30 09:20:52 2020 -0400 Test fix commit 6ebcceeb5ca314313c197ff8543a87343e82a7a1 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 18:49:01 2020 -0400 Add changelog commit 4a1d7383b0c7d119acf0f97866be902c61cff0f5 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 18:46:52 2020 -0400 Bundle transmission commit 88bd4abf0cf105765e622a2fedd18b265ec8fbbe Merge: 7cde945281 25fc747b9f Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 17:31:23 2020 -0400 Merge branch 'master' into ja_20200617_subscription_send_bundles commit 7cde945281890ce34023a1e954a24503f2741809 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 17:10:33 2020 -0400 Work on seed bundles commit ed2e62752efc828c16e0ca772c76ca1428610777 Author: jamesagnew <jamesagnew@gmail.com> Date: Mon Jun 29 09:39:10 2020 -0400 Work on subscriptions commit 52addcff5916ee3f32b245f464dfa13f4e1c6ac8 Merge: 64a9eaa4de bf8de84801 Author: jamesagnew <jamesagnew@gmail.com> Date: Sat Jun 27 18:09:23 2020 -0400 Merge branch 'master' into ja_20200617_subscription_send_bundles commit 64a9eaa4de38b5b16c0b5d8f3727634c897f06de Author: jamesagnew <jamesagnew@gmail.com> Date: Wed Jun 17 18:32:17 2020 -0400 Start work commit f74eba5397d40f948970c0fc77ef721b021de46a Author: jamesagnew <jamesagnew@gmail.com> Date: Wed Jun 17 18:28:18 2020 -0400 Terser should create correct Enumeration on create 30 June 2020, 18:31:40 UTC
fa4bbe3 Allow search criteria as subscription delivery mechanism (#1951) * Terser should create correct Enumeration on create * Start work * Work on subscriptions * Work on seed bundles * Bundle transmission * Add changelog * Test fix * Fix LGTM warning 30 June 2020, 18:29:09 UTC
cd69a14 Create codeql-analysis.yml 30 June 2020, 15:58:29 UTC
072f3a4 Use read partition for finding update candidate on upsert (#1945) * Use read partition for finding update candidate on upsert * Add changelog 29 June 2020, 22:22:27 UTC
25fc747 Merge pull request #1950 from jamesagnew/hotfix-test-import Hotfix test import 29 June 2020, 20:23:52 UTC
bb7d889 License header updates 29 June 2020, 19:15:51 UTC
8df0448 Fix import 29 June 2020, 18:04:03 UTC
4e789fb Fix import error 29 June 2020, 18:01:38 UTC
e365e64 Merge pull request #1906 from jamesagnew/spring-batch-integration Spring batch integration 28 June 2020, 23:10:43 UTC
be23eb3 Move the flush into the existing transaction 27 June 2020, 22:06:37 UTC
bf8de84 License header 26 June 2020, 23:25:36 UTC
dac5168 Move validation settings bean 26 June 2020, 22:31:13 UTC
16039af Fix up samlpe starters 26 June 2020, 20:15:31 UTC
8f6aee6 Fix batch project to now use an async task launcher 26 June 2020, 19:22:23 UTC
b31b665 Add async to the job launcher, fix test to reflect this 26 June 2020, 18:51:01 UTC
0b62259 Muck with initial loading to allow EMF and platformtransactionmanager to be available 26 June 2020, 17:13:03 UTC
ceeff0c Merge pull request #1942 from jamesagnew/im_20200619_mariadb_expand_valueset_fix Im 20200619 mariadb expand valueset fix 26 June 2020, 00:05:24 UTC
13bbdde pipeline fun 25 June 2020, 22:38:15 UTC
484f390 Fix batch test 25 June 2020, 20:00:59 UTC
7322760 Merge remote-tracking branch 'origin/spring-batch-integration' into spring-batch-integration 25 June 2020, 19:27:46 UTC
c11b6ee back out Tx wrap use qualifier 25 June 2020, 19:27:31 UTC
21567fd Tidy await 25 June 2020, 18:42:17 UTC
ed155e7 wip 25 June 2020, 17:37:02 UTC
1d9641a fix empilinks 25 June 2020, 17:28:03 UTC
93da042 fix empi tests so they work with Spring Batch (all but one test fixed) 25 June 2020, 15:14:42 UTC
e51c5b5 change transactionmanager name so it doesnt shadow the batchprocessing one 25 June 2020, 04:03:02 UTC
06e1368 Re-add comment 25 June 2020, 04:00:45 UTC
6875740 Merge branch 'spring-batch-integration' of github.com:jamesagnew/hapi-fhir into spring-batch-integration 25 June 2020, 03:15:47 UTC
3da4ad2 undoes merge issues 25 June 2020, 03:00:52 UTC
a69c147 Merge remote-tracking branch 'remotes/origin/master' into spring-batch-integration 25 June 2020, 02:07:38 UTC
55ff15d Merge remote-tracking branch 'remotes/origin/master' into im_20200619_mariadb_expand_valueset_fix 24 June 2020, 21:43:34 UTC
053094f Apply recent fixes for MySQL migration tasks to MariaDB as well. 24 June 2020, 21:42:46 UTC
571589d Merge branch 'master' into spring-batch-integration 24 June 2020, 20:46:13 UTC
64dbd03 Increase min thread count for batch. Add new which waits for all bulkexport jobs to be done 24 June 2020, 20:16:11 UTC
5e3e7c4 Changes to support valueset expansion with Elasticsearch. 24 June 2020, 19:48:06 UTC
99fe66b Fix pom to use project.version 24 June 2020, 18:52:05 UTC
a774092 Specify version 24 June 2020, 18:02:52 UTC
59659b2 Move order of modules 24 June 2020, 17:11:30 UTC
2bd1780 Update changelog 24 June 2020, 16:46:56 UTC
38a2b00 Empi 69 and candidates (#1936) broaden empi blocking searches to support and searchparams as well as ors 24 June 2020, 13:12:56 UTC
4cccc98 nop for CI 23 June 2020, 23:29:36 UTC
bb7a773 Merge branch 'master' into spring-batch-integration 23 June 2020, 23:02:41 UTC
e65c264 Support double _has expressions (#1939) * Support nested _has queries * Add changelog 23 June 2020, 21:58:47 UTC
6825d2f Reduce DB roundtrips for revincludes (#1937) * Reduce DB roundtrips for revincludes * Add changelog 23 June 2020, 20:26:04 UTC
f88298a Remote terminology service enhancements (#1934) * Remote terminology service enhancements * Add changelog 23 June 2020, 15:35:26 UTC
67d363f Add setting to allow validation of reference targets (#1932) * Add setting to allow validation of reference targets * Add changelog * Add changelog * License headers * Plugin version bump * Experiment with Maven build 23 June 2020, 15:35:10 UTC
e849ff2 Merge pull request #1933 from jamesagnew/dm-20200622-fix-valueset-expand-with-offset-and-count Fix ValueSet$expand with offset and count parameters. 22 June 2020, 22:30:22 UTC
ce0cb89 Improve tests. 22 June 2020, 21:22:21 UTC
ced376f Add changelog entry; fix typo. 22 June 2020, 21:02:08 UTC
314df43 BaseValidationSupportWrapper.expandValueSet(...) and ValidationSupportChain.expandValueSet(...) were incorrectly replacing expansion options (i.e. offset and count) with null. 22 June 2020, 20:52:52 UTC
5bf1e94 Fix to accomodate MySQL and MariaDB. 19 June 2020, 21:26:45 UTC
0e86732 Add changelog 19 June 2020, 21:03:22 UTC
46c00f4 Update for Loinc 2.68 (#1917) * Work on loinc updates * Work on loinc upload * Clean up CLI config * Add changelog * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/TermLoaderSvcImpl.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/r4/TerminologyUploaderProviderR4Test.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincUploadPropertiesEnum.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/term/TerminologyLoaderSvcLoincTest.java Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> * Clean up imports * LOINC fixes * Loinc loader fixes Co-authored-by: IanMMarshall <49525404+IanMMarshall@users.noreply.github.com> 18 June 2020, 20:55:11 UTC
4119cbb Terser should create correct Enumeration on create 17 June 2020, 22:32:27 UTC
abf0a00 Merge pull request #1928 from jamesagnew/im_20200615_mysql_migration_syntax Im 20200615 mysql migration syntax 17 June 2020, 18:21:17 UTC
b654006 Improve TX scoping for validation (#1925) * Improve TX scoping for validation * Test fix * Test fix * Some cleanup * Test fixes * Test fix 17 June 2020, 18:04:12 UTC
5b120ee Removed unused code and import statement. 17 June 2020, 15:57:37 UTC
5d22af4 Added tests for cases where a renamed column is used in a Foreign Key constraint. 17 June 2020, 15:56:20 UTC
eb990e9 Enhance added JUnit test. 17 June 2020, 13:05:53 UTC
cc7ed1b Cleanup JUnit test. 16 June 2020, 21:21:17 UTC
2d857f4 Fix broken JUnit. 16 June 2020, 21:13:00 UTC
0bd8084 Additional fixes to migration tasks for MySQL. 16 June 2020, 20:05:10 UTC
d32ad74 some renaming 16 June 2020, 04:49:34 UTC
9222fa3 change transaction call 15 June 2020, 22:17:25 UTC
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