https://github.com/stan-dev/stan

sort by:
Revision Author Date Message Commit Date
77ea2b4 Merge branch 'develop' into feature/metropolis 14 July 2014, 21:01:16 UTC
b29dfc5 Merge pull request #759 from stan-dev/bugfix/issue-734-user-fun-name-var-conflict Fixes #734. Bugfix/issue 734 user fun name var conflict 14 July 2014, 15:41:24 UTC
0f46a60 Merge branch 'develop' into bugfix/issue-734-user-fun-name-var-conflict Conflicts: doc/stan-reference-2.3.0.pdf src/test/unit/gm/parser_test.cpp 14 July 2014, 04:30:09 UTC
5812d7d Merge pull request #758 from stan-dev/bugfix/issue-733-function-void-args Fixes #733. Bugfix/issue 733 function void args 13 July 2014, 10:55:19 UTC
43a7072 rewrote logic of void check for user-defined function args to actually fail when it should 12 July 2014, 00:57:47 UTC
cc7a5a7 Merge branch 'bugfix/issue-733-function-void-args' of https://github.com/stan-dev/stan into bugfix/issue-733-function-void-args 11 July 2014, 22:58:57 UTC
c7921f6 Merge pull request #767 from alyst/fix_self_transpose_doc Thanks --- looks good. fix typo in multiply_lower_tri_self_transpose() 11 July 2014, 19:30:00 UTC
3ded970 fix typo in multiply_lower_tri_self_transpose() 11 July 2014, 19:12:05 UTC
16c3569 updating test model -- had a typo 11 July 2014, 16:57:51 UTC
e5f2fa8 Merge pull request #751 from stan-dev/feature/issue-652-remove-nesterov-optimization Fixes #652. Feature/issue 652 remove nesterov optimization 11 July 2014, 16:52:07 UTC
2a293f7 Merge pull request #746 from stan-dev/feature/issue-331-error-message-1-indexed Fixes #331. Feature/issue 331 error message 1 indexed 11 July 2014, 16:49:50 UTC
906f4b3 removed extra param max_adapt from metro 11 July 2014, 15:52:05 UTC
272d788 fixed call to params_r in base_metro 11 July 2014, 15:49:30 UTC
f996595 changed params_r form std::vector to Eigen::Vector 11 July 2014, 15:48:53 UTC
34ac39c removed discrete parameters from base_metro 11 July 2014, 15:47:52 UTC
6911d56 Merge pull request #744 from stan-dev/feature/issue-743-von_mises-pi fixes #743. Instead of PI, multiplied by 2 and called it TWO_PI 11 July 2014, 07:25:18 UTC
2a075ca Merge pull request #716 from stan-dev/feature/issue-413-cholesky-corr-type Fixes #413. Feature/issue 413 cholesky corr type 11 July 2014, 07:23:02 UTC
4f77b2d adding test for 1-indexed check_corr_matrix message 11 July 2014, 05:12:48 UTC
cb93059 removed another exp_normal file 10 July 2014, 21:03:37 UTC
2b35a72 removed exp_normal files 10 July 2014, 21:03:02 UTC
6f4fcd0 added metropolis to command 10 July 2014, 21:00:54 UTC
8605923 removed rwm from args 10 July 2014, 21:00:46 UTC
2eef3a9 added metropolis to arguments 10 July 2014, 20:56:37 UTC
dea4956 modified metropolis to work with new interface 10 July 2014, 20:51:51 UTC
b2ed079 Merge branch 'develop' into feature/metropolis Conflicts: src/stan/gm/command.hpp src/test/models/basic_distributions/binormal_test.cpp src/test/models/basic_distributions/inv_wishart_test.cpp src/test/models/basic_distributions/normal_mixture_test.cpp src/test/models/basic_distributions/normal_test.cpp src/test/models/basic_distributions/ordered_pair_test.cpp src/test/models/basic_distributions/sorted_pair_test.cpp src/test/models/basic_distributions/triangle_test.cpp src/test/models/basic_distributions/uniform_test.cpp src/test/models/basic_distributions/wishart2_test.cpp src/test/models/basic_distributions/wishart2x2_test.cpp src/test/models/basic_distributions/wishart_test.cpp src/test/models/basic_estimators/bernoulli_test.cpp src/test/models/basic_estimators/normal_loc_test.cpp src/test/models/basic_estimators/normal_mixture_test.cpp src/test/models/bugs_examples/vol1/blocker/blocker_test.cpp src/test/models/bugs_examples/vol1/bones/bones_test.cpp src/test/models/bugs_examples/vol1/dogs/dogs_test.cpp src/test/models/bugs_examples/vol1/dyes/dyes_test.cpp src/test/models/bugs_examples/vol1/epil/epil_test.cpp src/test/models/bugs_examples/vol1/equiv/equiv_test.cpp src/test/models/bugs_examples/vol1/inhalers/inhalers_test.cpp src/test/models/bugs_examples/vol1/kidney/kidney_test.cpp src/test/models/bugs_examples/vol1/leuk/leuk_test.cpp src/test/models/bugs_examples/vol1/leukfr/leukfr_test.cpp src/test/models/bugs_examples/vol1/lsat/lsat_test.cpp src/test/models/bugs_examples/vol1/magnesium/magnesium_test.cpp src/test/models/bugs_examples/vol1/mice/mice_test.cpp src/test/models/bugs_examples/vol1/oxford/oxford_test.cpp src/test/models/bugs_examples/vol1/pump/pump_test.cpp src/test/models/bugs_examples/vol1/rats/rats_test.cpp src/test/models/bugs_examples/vol1/salm/salm2_test.cpp src/test/models/bugs_examples/vol1/salm/salm_test.cpp src/test/models/bugs_examples/vol1/seeds/seeds_test.cpp src/test/models/bugs_examples/vol1/stacks/stacks_a_normal_test.cpp src/test/models/bugs_examples/vol1/stacks/stacks_b_dexp_test.cpp src/test/models/bugs_examples/vol1/stacks/stacks_c_t4_test.cpp src/test/models/bugs_examples/vol1/stacks/stacks_d_normal_ridge_test.cpp src/test/models/bugs_examples/vol1/stacks/stacks_e_dexp_ridge_test.cpp src/test/models/bugs_examples/vol1/stacks/stacks_f_t4_ridge_test.cpp src/test/models/bugs_examples/vol1/surgical/surgical_simple_test.cpp src/test/models/bugs_examples/vol1/surgical/surgical_test.cpp src/test/models/bugs_examples/vol2/air/air_test.cpp src/test/models/bugs_examples/vol2/alli/alli2_test.cpp src/test/models/bugs_examples/vol2/beetles/beetles_cloglog_test.cpp src/test/models/bugs_examples/vol2/beetles/beetles_logit_test.cpp src/test/models/bugs_examples/vol2/beetles/beetles_probit_test.cpp src/test/models/bugs_examples/vol2/birats/birats_test.cpp src/test/models/bugs_examples/vol2/cervix/cervix2_test.cpp src/test/models/bugs_examples/vol2/dugongs/dugongs_test.cpp src/test/models/bugs_examples/vol2/endo/endo1_test.cpp src/test/models/bugs_examples/vol2/endo/endo2_test.cpp src/test/models/bugs_examples/vol2/endo/endo3_test.cpp src/test/models/bugs_examples/vol2/eyes/eyes_test.cpp src/test/models/bugs_examples/vol2/hearts/hearts_test.cpp src/test/models/bugs_examples/vol2/ice/ice_test.cpp src/test/models/bugs_examples/vol2/jaws/jaws_test.cpp src/test/models/bugs_examples/vol2/mvn_orange/mvn_orange_test.cpp src/test/models/bugs_examples/vol2/orange/orange_test.cpp src/test/models/bugs_examples/vol2/t_df/estdof_test.cpp src/test/models/bugs_examples/vol2/t_df/simt4_test.cpp src/test/models/bugs_examples/vol3/camel/camel2_test.cpp src/test/models/bugs_examples/vol3/camel/camel_test.cpp src/test/models/bugs_examples/vol3/data_cloning/seeds_test.cpp src/test/models/bugs_examples/vol3/funshapes/circle_test.cpp src/test/models/bugs_examples/vol3/funshapes/parallelagram_test.cpp src/test/models/bugs_examples/vol3/hepatitis/hepatitisME_test.cpp src/test/models/bugs_examples/vol3/hepatitis/hepatitis_test.cpp src/test/models/command_test.cpp src/test/models/misc/eight_schools/eight_schools_test.cpp src/test/models/model_test_fixture.hpp src/test/models/transforms/bounded_double_test.cpp src/test/models/transforms/correlation_matrix_test.cpp src/test/models/transforms/simplex_test.cpp src/test/prob/distributions/univariate/continuous/exponential_test.cpp src/test/prob/distributions/univariate/discrete/beta_binomial_test.cpp src/test/prob/distributions/univariate/discrete/binomial_test.cpp 10 July 2014, 20:43:54 UTC
c126722 fixes issue #734 by disallowing user-defined function names as variables 09 July 2014, 21:29:17 UTC
404abdc completes fix for issue #733, by printing warning and failing if user-defined functions contain void type arguments 09 July 2014, 18:31:46 UTC
e67855f Merge branch 'develop' of https://github.com/stan-dev/stan into develop 08 July 2014, 20:27:57 UTC
fc4b0df reorder factor_cov_matrix args to match convention, add remaining tests, completes fixes for issue 08 July 2014, 20:27:41 UTC
02044f9 fixed bug in K==2 boundary condition for factor_U, with test 08 July 2014, 18:45:33 UTC
7d45516 Merge branch 'develop' of https://github.com/stan-dev/stan into feature/issue-413-cholesky-corr-type 08 July 2014, 18:20:33 UTC
5928850 Update README.md I added all the new functionality to our top-level GitHub readme. 08 July 2014, 18:14:22 UTC
2d5b27b Merge branch 'develop' of https://github.com/stan-dev/stan into develop 08 July 2014, 16:09:48 UTC
9ab1917 added trnasform test for range 08 July 2014, 16:09:32 UTC
c21b5f4 updating gitignore 08 July 2014, 03:58:13 UTC
904a5ca removing nesterov option from command.hpp 08 July 2014, 03:50:02 UTC
74a3b84 removing nesterov from argument list 08 July 2014, 03:48:24 UTC
da7635a updating test with a failing test case for the expected behavior 08 July 2014, 03:47:08 UTC
686b0e7 adding unit test for arg_optimize_algo 08 July 2014, 03:46:27 UTC
02c5553 Merge pull request #741 from stan-dev/feature/issue-740-gitignore-testmodels Fixes #740. updating .gitignore to ignore generated .cpp files and not ignore .stan within test-models 08 July 2014, 03:23:18 UTC
01dbdbe Merge pull request #750 from stan-dev/feature/issue-749-fix-arg_init fixes #749. updating arg_init. The test for this is in CmdStan. 08 July 2014, 03:01:50 UTC
fa54ebc updating arg_init. The test for this is in CmdStan. 08 July 2014, 03:00:15 UTC
3033bb8 changed order of factor_U and removed unused factor_L 07 July 2014, 22:09:12 UTC
aef2ec7 Merge pull request #729 from stan-dev/feature/issue-726-move-executables-to-CmdStan removing bin/stanc and bin/print from Stan 07 July 2014, 21:50:08 UTC
f549c28 Merge pull request #608 from stan-dev/feature/fix-issue-589-vectorize-multi_normal Fixes #589. Feature/fix issue 589 vectorize multi normal 07 July 2014, 21:41:00 UTC
d614c3f Update von_mises.hpp 07 July 2014, 21:04:25 UTC
3cc9c5b added a ifdef for ERROR_INDEX 07 July 2014, 20:42:02 UTC
3ab93c9 replaced TWO_PI with 2*stan::math::pi() 07 July 2014, 20:22:46 UTC
e19d4fe removed unused commente code from transform.hpp and upgraded to multiply_lower_tri_self_transpose in corr_matrix_constrain 07 July 2014, 20:18:26 UTC
05ec8c7 Merge branch 'develop' into feature/issue-743-von_mises-pi 07 July 2014, 20:17:32 UTC
745d768 Merge branch 'feature/issue-413-cholesky-corr-type' of https://github.com/stan-dev/stan into feature/issue-413-cholesky-corr-type 07 July 2014, 20:08:52 UTC
aa7fa6c Merge branch 'develop' of https://github.com/stan-dev/stan into develop 07 July 2014, 20:08:31 UTC
a6c1d9c Merge pull request #747 from stan-dev/bugfix/issue-742-ARM-Ch2 Fixes #747. Bugfix/issue 747 arm ch2 07 July 2014, 19:58:52 UTC
18d46e0 fixed R script, updated README, polls.dat now has 1 row per survey 07 July 2014, 18:03:49 UTC
9609e7b Merge branch 'develop' of https://github.com/stan-dev/stan into develop 07 July 2014, 17:03:22 UTC
def020c fixing call to dom_err_vec 06 July 2014, 16:08:39 UTC
9810407 Merge branch 'develop' into feature/issue-331-error-message-1-indexed 06 July 2014, 03:39:38 UTC
872d0a7 fixes #743. Instead of PI, multiplied by 2 and called it TWO_PI 05 July 2014, 04:18:48 UTC
40c4d80 Merge pull request #728 from ariddell/feature/vs2008-iterator Use const_iterator to resolve Visual Studio 2008 compile error 04 July 2014, 03:04:50 UTC
b5c48a5 Merge pull request #719 from jrnold/doc-fix-formatting-reserved-names fix formatting of reserved names 04 July 2014, 01:55:43 UTC
db9f996 Merge pull request #587 from stan-dev/feature/lbfgs Feature/lbfgs 03 July 2014, 19:22:22 UTC
2984166 Merge pull request #717 from jrnold/minor-fix-doc-cholesky_corr-cov removed references to choleksy_(cor|cov) types 03 July 2014, 17:48:22 UTC
0d4f3ce Merge pull request #739 from stan-dev/feature/issue-696-remove-tabs removed tabs in stan and test files 03 July 2014, 17:33:01 UTC
11d13e4 Merge branch 'develop' into feature/issue-331-error-message-1-indexed Conflicts: src/test/unit/math/error_handling/matrix/check_ordered_test.cpp src/test/unit/math/error_handling/matrix/check_positive_ordered_test.cpp 03 July 2014, 16:46:15 UTC
189b14d Merge branch 'develop' into feature/issue-726-move-executables-to-CmdStan Conflicts: make/tests 03 July 2014, 16:38:03 UTC
5778d3f Merge pull request #738 from stan-dev/feature/issue-737-check_positive_ordered Fixes #737. updating spec and test for check_positive_ordered 03 July 2014, 16:06:27 UTC
8a48996 Merge pull request #732 from stan-dev/bugfix/issue-723-functions-in-23 Fixes #723. Bugfix/issue 723 functions in v2.3.0 03 July 2014, 16:05:38 UTC
7551d81 updating .gitignore to ignore generated .cpp files and not ignore .stan within test-models 03 July 2014, 15:47:15 UTC
950686d Merge branch 'develop' of https://github.com/stan-dev/stan into develop 03 July 2014, 15:32:44 UTC
e420f31 removed tabs in stan and test files 03 July 2014, 15:08:59 UTC
5f484a3 Merge branch 'develop' into feature/lbfgs 03 July 2014, 14:33:11 UTC
8a41bc5 Merge pull request #736 from stan-dev/feature/issue-725-remove-main Removes main from generated code 03 July 2014, 13:59:05 UTC
5bafc65 Merge pull request #727 from stan-dev/feature/issue-382-remove-cout-cerr Fixes #382. Remove std::cout and std::cerr from all tests 03 July 2014, 13:04:07 UTC
cc854dd Merge pull request #709 from stan-dev/feature/ARM Fixes #707. Feature/arm models 03 July 2014, 13:03:07 UTC
96da563 Merge pull request #687 from stan-dev/feature/issue-675-check-autodiff Fixes #675. Fixes #701. Fixes #309. Feature/issue 675 check autodiff 03 July 2014, 13:00:20 UTC
99dfeb7 Merge pull request #710 from stan-dev/feature/issue-491-add-litters fixes #491. Feature/issue 491 add litters 03 July 2014, 12:37:49 UTC
225c45b Merge pull request #718 from jrnold/doc-fix-variable-names-conflict good to go. 03 July 2014, 06:00:18 UTC
15b21a6 Merge pull request #722 from jrnold/doc-typo-effective-sample-size ok to merge small change 03 July 2014, 05:59:45 UTC
56eb15b adding int_fun that .gitignore previously masked 03 July 2014, 05:55:14 UTC
ec60b40 updated all code so it is 1-indexed 03 July 2014, 00:31:43 UTC
3e63de1 adding error_index as a trait 03 July 2014, 00:22:34 UTC
ca7304d adding tests for 1-indexed messages in matrix checks 02 July 2014, 23:46:01 UTC
365420a removing duplicate name in error message 02 July 2014, 23:45:50 UTC
d41a9f2 updating spec and test for check_positive 02 July 2014, 23:45:49 UTC
69ae88c updating spec and test for check_positive_ordered 02 July 2014, 23:45:49 UTC
0b5f3da updating spec and test for check_positive 02 July 2014, 23:38:30 UTC
1f1bea8 updating spec and test for check_positive_ordered 02 July 2014, 23:18:08 UTC
fdb4165 changed call to log_prob in bfgs 02 July 2014, 21:37:03 UTC
77004d8 Merge branch 'develop' into feature/lbfgs 02 July 2014, 21:18:44 UTC
dde8d5d updating with failing tests for 1-indexed error messages 02 July 2014, 21:09:42 UTC
a441904 modified make/tests for bfgs tests 02 July 2014, 21:04:58 UTC
c8751a2 added do_bfgs_optimize test 02 July 2014, 20:37:11 UTC
0d1e811 added bfgs tests 02 July 2014, 20:24:19 UTC
21765f9 added lbfgs_update tests 02 July 2014, 20:24:06 UTC
791273c adding test for 0 vs 1 indexing within dom_err_vec 02 July 2014, 20:15:18 UTC
3e584a5 added template parameter for dom_err_vec to handle indexing 02 July 2014, 19:57:59 UTC
e026ba6 removing --no_main option from makefile 02 July 2014, 19:13:53 UTC
03b9402 removed ability to generate main 02 July 2014, 19:09:47 UTC
e0b6888 adding test to show that 'int main' isn't in the generated code 02 July 2014, 19:04:48 UTC
b7bb18b fixed typo. 02 July 2014, 18:49:02 UTC
back to top