c1c9c46 | Stephen Von Worley | 07 March 2024, 03:01:31 UTC | change lf to cr in diagnostic outputs | 07 March 2024, 03:01:31 UTC |
238c8ad | Stephen Von Worley | 07 March 2024, 02:38:02 UTC | test cr lf 2 | 07 March 2024, 02:38:02 UTC |
374c0a0 | Stephen Von Worley | 06 March 2024, 19:03:41 UTC | make periodic and request diagnostics separately enableable | 06 March 2024, 19:03:41 UTC |
e5aacf9 | Stephen Von Worley | 06 March 2024, 02:36:49 UTC | add CensorHelper | 06 March 2024, 02:36:49 UTC |
b2a8856 | Stephen Von Worley | 06 March 2024, 01:38:31 UTC | improve test | 06 March 2024, 01:38:31 UTC |
6f59b42 | Stephen Von Worley | 06 March 2024, 01:02:59 UTC | refactor | 06 March 2024, 01:02:59 UTC |
56eca74 | Stephen Von Worley | 05 March 2024, 18:54:41 UTC | refactor | 05 March 2024, 18:54:41 UTC |
18bbb95 | Stephen Von Worley | 05 March 2024, 18:01:33 UTC | rename, add frequency resource and test | 05 March 2024, 18:01:33 UTC |
179da48 | Stephen Von Worley | 05 March 2024, 01:10:43 UTC | add config, refactor, add df output | 05 March 2024, 01:10:43 UTC |
c453fbb | Stephen Von Worley | 04 March 2024, 21:57:25 UTC | merge develop | 04 March 2024, 21:57:25 UTC |
88b32d1 | Denis Yuen | 04 March 2024, 18:32:46 UTC | Add security checklist checkbox (#5826) * Update PULL_REQUEST_TEMPLATE.md | 04 March 2024, 18:32:46 UTC |
6e22551 | Steve Von Worley | 04 March 2024, 18:07:57 UTC | improve error message when scalar is supplied where list is expected https://ucsc-cgl.atlassian.net/browse/DOCK-2468 #5683 | 04 March 2024, 18:07:57 UTC |
c345b41 | Nayeon Hyun | 01 March 2024, 18:55:19 UTC | SEAB-5910: add topic selection to elasticsearch (#5827) * add topic selection to elasticsearch * update comment | 01 March 2024, 18:55:19 UTC |
1e7da37 | Kathy Tran | 28 February 2024, 14:14:59 UTC | Remove deprecated aggregated executions field (#5824) https://ucsc-cgl.atlassian.net/browse/SEAB-6246 | 28 February 2024, 14:14:59 UTC |
54338e0 | Lucia Zhang | 27 February 2024, 21:59:04 UTC | SEAB-6266: Update deprecated CircleCI images (#5823) * try bumping linux image to 2023.10.1 * try updating remote docker to docker24 | 27 February 2024, 21:59:04 UTC |
9fc2412 | Denis Yuen | 26 February 2024, 19:13:21 UTC | Merge branch 'hotfix/1.15.2' into develop | 26 February 2024, 19:13:21 UTC |
19c99aa | dependabot[bot] | 26 February 2024, 15:45:12 UTC | Bump org.apache.commons:commons-compress from 1.24.0 to 1.26.0 in /bom-internal (#5816) * Bump org.apache.commons:commons-compress in /bom-internal Bumps org.apache.commons:commons-compress from 1.24.0 to 1.26.0. --- updated-dependencies: - dependency-name: org.apache.commons:commons-compress dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update related enforced libraries --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 26 February 2024, 15:45:12 UTC |
2006206 | Denis Yuen | 26 February 2024, 15:29:56 UTC | Reset version | 26 February 2024, 15:29:56 UTC |
a62e58c | Denis Yuen | 26 February 2024, 15:27:20 UTC | Update artifacts | 26 February 2024, 15:27:20 UTC |
970cbb9 | Denis Yuen | 23 February 2024, 22:22:55 UTC | Fix basic search authors (#5819) * add revealing test * add fix for multiple relevant authors in old search results | 23 February 2024, 22:22:55 UTC |
91643fe | Denis Yuen | 23 February 2024, 18:22:00 UTC | fix scala bytecode compilation and make property (#5820) * fix scala bytecode compilation and make property * tie in a couple other likely areas to be missed | 23 February 2024, 18:22:00 UTC |
71ecf9e | Stephen Von Worley | 23 February 2024, 16:30:01 UTC | add comment [skip ci] | 23 February 2024, 16:30:01 UTC |
d56e9a8 | Stephen Von Worley | 23 February 2024, 16:27:01 UTC | checkstyle + tweaks | 23 February 2024, 16:27:01 UTC |
368b0c9 | Stephen Von Worley | 23 February 2024, 15:52:12 UTC | add censoring code, refactor | 23 February 2024, 15:52:12 UTC |
5094aeb | Stephen Von Worley | 23 February 2024, 00:45:35 UTC | refactor | 23 February 2024, 00:45:35 UTC |
3ff70ef | Stephen Von Worley | 22 February 2024, 23:33:44 UTC | next revision | 22 February 2024, 23:33:44 UTC |
9fadbbf | dependabot[bot] | 22 February 2024, 18:14:23 UTC | Bump org.postgresql:postgresql from 42.4.3 to 42.7.2 in /bom-internal (#5814) * Bump org.postgresql:postgresql from 42.4.3 to 42.7.2 in /bom-internal Bumps [org.postgresql:postgresql](https://github.com/pgjdbc/pgjdbc) from 42.4.3 to 42.7.2. - [Release notes](https://github.com/pgjdbc/pgjdbc/releases) - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md) - [Commits](https://github.com/pgjdbc/pgjdbc/commits) --- updated-dependencies: - dependency-name: org.postgresql:postgresql dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update transitive dependency --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 22 February 2024, 18:14:23 UTC |
cb6f9dd | Steve Von Worley | 22 February 2024, 16:20:07 UTC | remove deprecated properties from Entry https://ucsc-cgl.atlassian.net/browse/SEAB-6083 | 22 February 2024, 16:20:07 UTC |
f4aa0bf | Stephen Von Worley | 22 February 2024, 16:17:11 UTC | use jersey eventlisteners | 22 February 2024, 16:17:11 UTC |
e8415a9 | Stephen Von Worley | 22 February 2024, 06:30:55 UTC | skeleton | 22 February 2024, 06:30:55 UTC |
0de8f19 | Denis Yuen | 16 February 2024, 15:39:45 UTC | Partial update to java 21 (#5805) * iterate dockstore version * test it all with Java 21 * fix version in github actions * just compile with newer scala (but do not use it as a dependency) | 16 February 2024, 15:39:45 UTC |
4910d24 | Denis Yuen | 15 February 2024, 15:40:43 UTC | Merge tag '1.15.1' into develop testing out release process | 15 February 2024, 15:40:43 UTC |
811c8e8 | Denis Yuen | 15 February 2024, 15:40:36 UTC | Merge branch 'hotfix/1.15.1' | 15 February 2024, 15:40:36 UTC |
284dab1 | Denis Yuen | 15 February 2024, 15:40:20 UTC | Reset version | 15 February 2024, 15:40:20 UTC |
5e45525 | Denis Yuen | 15 February 2024, 15:37:54 UTC | Update artifacts | 15 February 2024, 15:37:54 UTC |
f96d36b | Steve Von Worley | 15 February 2024, 15:22:59 UTC | DOCK-2512: Fix pushes of annotated tags (#5809) * fix pushes of annotated tags * add some tests to make sure branch pushes work, comment | 15 February 2024, 15:22:59 UTC |
8c96b1b | Denis Yuen | 06 February 2024, 19:54:45 UTC | Merge tag '1.15.0' into develop release | 06 February 2024, 19:54:45 UTC |
316fda7 | Denis Yuen | 06 February 2024, 19:54:17 UTC | Merge branch 'release/1.15.0' | 06 February 2024, 19:54:17 UTC |
24bdf4d | Denis Yuen | 06 February 2024, 19:53:39 UTC | Reset version | 06 February 2024, 19:53:39 UTC |
5bd1911 | Denis Yuen | 06 February 2024, 19:49:42 UTC | Update artifacts | 06 February 2024, 19:49:42 UTC |
73a34aa | Denis Yuen | 02 February 2024, 20:12:13 UTC | Merge branch 'release/1.15.0' into develop | 02 February 2024, 20:12:13 UTC |
ce2337e | Denis Yuen | 02 February 2024, 18:47:35 UTC | Reset version | 02 February 2024, 18:47:35 UTC |
d8c4b15 | Denis Yuen | 02 February 2024, 18:42:43 UTC | Update artifacts | 02 February 2024, 18:42:43 UTC |
6e61804 | Kathy Tran | 02 February 2024, 18:19:13 UTC | Separate execution metrics by status (#5800) https://ucsc-cgl.atlassian.net/browse/SEAB-6199 | 02 February 2024, 18:19:13 UTC |
970e4ed | Denis Yuen | 26 January 2024, 18:21:57 UTC | search workflow version as well as default version for authors (#5797) * search workflow version as well as default version for authors * sanity check test | 26 January 2024, 18:21:57 UTC |
7b3ffed | Denis Yuen | 25 January 2024, 23:04:23 UTC | Merge branch 'release/1.15.0' into develop | 25 January 2024, 23:04:23 UTC |
92be68c | Denis Yuen | 25 January 2024, 23:04:01 UTC | add zenodo patch (#5795) * add patch * Update ZenodoHelper.java | 25 January 2024, 23:04:01 UTC |
edbb65e | Denis Yuen | 23 January 2024, 22:00:57 UTC | Merge branch 'release/1.15.0' into develop | 23 January 2024, 22:00:57 UTC |
05a7424 | Denis Yuen | 23 January 2024, 21:47:01 UTC | Reset version | 23 January 2024, 21:47:01 UTC |
43415aa | Denis Yuen | 23 January 2024, 21:44:30 UTC | Update artifacts | 23 January 2024, 21:44:30 UTC |
fe81bc5 | Kathy Tran | 23 January 2024, 20:11:06 UTC | Fix duplicate validator versions in get aggregated metrics response for "ALL" platform (#5789) https://ucsc-cgl.atlassian.net/browse/SEAB-6183 * Use set for validator versions to remove duplicate response | 23 January 2024, 20:11:06 UTC |
a159961 | dependabot[bot] | 23 January 2024, 19:51:34 UTC | Bump actions/cache from 3 to 4 (#5787) Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 23 January 2024, 19:51:34 UTC |
d542752 | Kathy Tran | 19 January 2024, 17:52:22 UTC | Decode s3 key components (#5788) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 | 19 January 2024, 17:52:22 UTC |
0fcd0cd | Denis Yuen | 16 January 2024, 21:05:50 UTC | Reset version | 16 January 2024, 21:05:50 UTC |
7654cde | Denis Yuen | 16 January 2024, 21:01:52 UTC | Update artifacts | 16 January 2024, 21:01:52 UTC |
1355d37 | Kathy Tran | 16 January 2024, 20:49:27 UTC | Add update execution metrics endpoint (#5778) https://ucsc-cgl.atlassian.net/browse/SEAB-5943 | 16 January 2024, 20:49:27 UTC |
85bb103 | Kathy Tran | 16 January 2024, 19:46:58 UTC | Add Aborted and Failed statuses, and new endpoint to support ingesting broad metrics (#5768) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 | 16 January 2024, 19:46:58 UTC |
5bb0db8 | dependabot[bot] | 15 January 2024, 15:28:05 UTC | Bump org.apache.commons:commons-compress from 1.22 to 1.24.0 in /bom-internal (#5775) * Bump org.apache.commons:commons-compress in /bom-internal Bumps org.apache.commons:commons-compress from 1.22 to 1.24.0. --- updated-dependencies: - dependency-name: org.apache.commons:commons-compress dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 15 January 2024, 15:28:05 UTC |
3879929 | Denis Yuen | 11 January 2024, 18:20:13 UTC | clean-up zenodo reference to wrong repo (#5784) | 11 January 2024, 18:20:13 UTC |
763132a | Denis Yuen | 11 January 2024, 17:59:39 UTC | Merge branch 'release/1.15.0' into develop | 11 January 2024, 17:59:39 UTC |
30f9872 | Steve Von Worley | 10 January 2024, 20:50:09 UTC | add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 | 10 January 2024, 20:50:09 UTC |
4bad42b | Steve Von Worley | 10 January 2024, 19:57:17 UTC | reduce memory consumption of TRS tools get https://ucsc-cgl.atlassian.net/browse/SEAB-6100 | 10 January 2024, 19:57:17 UTC |
29a4789 | Steve Von Worley | 10 January 2024, 19:56:15 UTC | add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 | 10 January 2024, 19:56:15 UTC |
1d22561 | Denis Yuen | 10 January 2024, 15:35:58 UTC | test postgres 13.13 (#5780) * test postgres 13.13 | 10 January 2024, 15:35:58 UTC |
a4aa717 | Denis Yuen | 03 January 2024, 18:16:45 UTC | avro update (#5772) (#5776) | 03 January 2024, 18:16:45 UTC |
0c1fa47 | dependabot[bot] | 03 January 2024, 18:15:54 UTC | Bump github/codeql-action from 2 to 3 (#5770) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/github/codeql-action/compare/v2...v3) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 03 January 2024, 18:15:54 UTC |
fe29ee5 | dependabot[bot] | 03 January 2024, 15:29:05 UTC | Bump actions/upload-pages-artifact from 2 to 3 (#5774) Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 2 to 3. - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/v2...v3) --- updated-dependencies: - dependency-name: actions/upload-pages-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 03 January 2024, 15:29:05 UTC |
fb52400 | Denis Yuen | 02 January 2024, 16:55:25 UTC | upgrades, test them (#5772) | 02 January 2024, 16:55:25 UTC |
0e99533 | dependabot[bot] | 02 January 2024, 16:54:22 UTC | Bump actions/deploy-pages from 3 to 4 (#5773) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 3 to 4. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 January 2024, 16:54:22 UTC |
07f2c2f | Denis Yuen | 18 December 2023, 21:14:16 UTC | enforce entryname is null or nonempty for lambda events - sorting issue (#5769) * make lambda events match workflows for naming | 18 December 2023, 21:14:16 UTC |
3c3b4e6 | Denis Yuen | 14 December 2023, 22:30:36 UTC | Merge branch 'release/1.15.0' into develop | 14 December 2023, 22:30:36 UTC |
1f59ba3 | Nayeon Hyun | 14 December 2023, 16:56:20 UTC | DOCK-2376: remove deprecated author and email field in Entry (#5706) * Update artifacts * remove author and email field * drop columns * partial revert * make things a bit more backwards compatible for the cli --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 14 December 2023, 16:56:20 UTC |
b2b9399 | Charles Overbeck | 13 December 2023, 22:13:54 UTC | Review tables for dbcreatedate and dbupdatedate (#5767) SEAB-3083 | 13 December 2023, 22:13:54 UTC |
0a4fd86 | dependabot[bot] | 13 December 2023, 19:32:01 UTC | Bump actions/configure-pages from 3 to 4 (#5766) Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 3 to 4. - [Release notes](https://github.com/actions/configure-pages/releases) - [Commits](https://github.com/actions/configure-pages/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/configure-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 13 December 2023, 19:32:01 UTC |
d358ca0 | dependabot[bot] | 13 December 2023, 19:31:44 UTC | Bump actions/deploy-pages from 2 to 3 (#5765) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 2 to 3. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v2...v3) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 13 December 2023, 19:31:44 UTC |
c92f92c | Denis Yuen | 08 December 2023, 20:32:39 UTC | Reset version | 08 December 2023, 20:32:39 UTC |
acd13bf | Denis Yuen | 08 December 2023, 20:29:59 UTC | Update artifacts | 08 December 2023, 20:29:59 UTC |
83095ae | Steve Von Worley | 05 December 2023, 00:46:08 UTC | fix nextflow 500 error in getContent() https://ucsc-cgl.atlassian.net/browse/DOCK-2476 https://github.com/dockstore/dockstore/issues/5714 | 05 December 2023, 00:46:08 UTC |
021bf96 | Denis Yuen | 01 December 2023, 20:19:49 UTC | fix from https://github.com/dockstore/zenodo-client/pull/27 (#5755) | 01 December 2023, 20:19:49 UTC |
f827ff7 | dependabot[bot] | 01 December 2023, 16:15:06 UTC | Bump actions/setup-java from 3 to 4 (#5764) * Bump actions/setup-java from 3 to 4 Bumps [actions/setup-java](https://github.com/actions/setup-java) from 3 to 4. - [Release notes](https://github.com/actions/setup-java/releases) - [Commits](https://github.com/actions/setup-java/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/setup-java dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * Update mvnw.yml * Update macos_instructions.yml --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 01 December 2023, 16:15:06 UTC |
ac56134 | Steve Von Worley | 30 November 2023, 23:46:51 UTC | add endpoint that retrieves an Entry by alias https://ucsc-cgl.atlassian.net/browse/SEAB-6025 | 30 November 2023, 23:46:51 UTC |
2284c1a | dependabot[bot] | 30 November 2023, 22:11:49 UTC | Bump ch.qos.logback:logback-classic from 1.4.11 to 1.4.12 in /bom-internal (#5761) * Bump ch.qos.logback:logback-classic in /bom-internal Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-classic dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 30 November 2023, 22:11:49 UTC |
de3fcd1 | dependabot[bot] | 30 November 2023, 22:11:38 UTC | Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal (#5757) * Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-core dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 30 November 2023, 22:11:38 UTC |
af389b7 | Charles Overbeck | 30 November 2023, 17:21:37 UTC | Restore disabled BitBucket test (#5762) Needed to adjust for quay.io now being case-sensitive SEAB-2063 | 30 November 2023, 17:21:37 UTC |
8e89ee7 | Steve Von Worley | 29 November 2023, 00:33:25 UTC | fix checker workflow configuration methods in Service and Notebook https://ucsc-cgl.atlassian.net/browse/SEAB-6022 | 29 November 2023, 00:33:25 UTC |
ba09bb2 | Nayeon Hyun | 21 November 2023, 20:51:41 UTC | DOCK-2440: allow null values in sorting in the github apps logs table (#5749) * allow null values in sorting * add entryname in search | 21 November 2023, 20:51:41 UTC |
2e734c2 | Steve Von Worley | 21 November 2023, 19:47:14 UTC | don't display certain Events when the referenced entry is unpublished https://ucsc-cgl.atlassian.net/browse/SEAB-5422 | 21 November 2023, 19:47:14 UTC |
77df419 | Kathy Tran | 21 November 2023, 14:08:59 UTC | Allow the submission of task metrics (#5738) https://ucsc-cgl.atlassian.net/browse/SEAB-5944 | 21 November 2023, 14:08:59 UTC |
077e75a | Steve Von Worley | 18 November 2023, 01:04:05 UTC | remove "dockstore.org" from allowable values for "delete stubbed workflow" endpoint https://ucsc-cgl.atlassian.net/browse/DOCK-1946 #4513 | 18 November 2023, 01:04:05 UTC |
70435d1 | dependabot[bot] | 17 November 2023, 18:51:27 UTC | Bump org.json:json from 20230227 to 20231013 in /bom-internal (#5710) * Bump org.json:json from 20230227 to 20231013 in /bom-internal Bumps [org.json:json](https://github.com/douglascrockford/JSON-java) from 20230227 to 20231013. - [Release notes](https://github.com/douglascrockford/JSON-java/releases) - [Changelog](https://github.com/stleary/JSON-java/blob/master/docs/RELEASES.md) - [Commits](https://github.com/douglascrockford/JSON-java/commits) --- updated-dependencies: - dependency-name: org.json:json dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> | 17 November 2023, 18:51:27 UTC |
afc2257 | Charles Overbeck | 16 November 2023, 23:56:00 UTC | Only indicate admin/curator for yourself or if you're admin SEAB-5786 I removed the SLIM_USER_FILTER because I noticed that all the fields it's referencing have @JsonIgnore anyway. | 16 November 2023, 23:56:00 UTC |
e31557b | David Steinberg | 16 November 2023, 21:21:25 UTC | Update cromwell version to latest on jfrog (#5741) * Update cromwell version to latest on jfrog * Add flattened pom * Disable failing BitBucket test --------- Co-authored-by: Charles Overbeck <coverbec@ucsc.edu> | 16 November 2023, 21:21:25 UTC |
0aa977b | Nayeon Hyun | 15 November 2023, 17:05:11 UTC | DOCK-2440: added sort and filter values on GitHub Apps Logs endpoints (#5730) * added offset, sort, filter values on endpoints * fix test * sonarcloud * codacy * pr review * added test for filter * oops * review * review * add max property * add s | 15 November 2023, 17:05:11 UTC |
d039384 | Nayeon Hyun | 14 November 2023, 17:46:57 UTC | remove security property (#5739) | 14 November 2023, 17:46:57 UTC |
5cef678 | Steve Von Worley | 07 November 2023, 22:32:33 UTC | enable search in notebook EntryTypeMetadata https://ucsc-cgl.atlassian.net/browse/SEAB-6002 | 07 November 2023, 22:32:33 UTC |
7358d3b | Steve Von Worley | 02 November 2023, 17:12:02 UTC | add GitHub codespaces import URL property to UI config https://ucsc-cgl.atlassian.net/browse/SEAB-5951 | 02 November 2023, 17:12:02 UTC |
4cc27fb | Steve Von Worley | 01 November 2023, 19:18:42 UTC | support notebook "launch to GitHub Codespace" https://ucsc-cgl.atlassian.net/browse/SEAB-5951 | 01 November 2023, 19:18:42 UTC |
90436a8 | Kathy Tran | 01 November 2023, 13:00:57 UTC | Add AI topic column and AI topic selection option (#5716) https://ucsc-cgl.atlassian.net/browse/SEAB-5909 * Add topicAI * Specify maxLength in openapi * Add comment about why hosted entries can't have automatic topic selection * Only change topic selection for an empty string topic if the selection is manual | 01 November 2023, 13:00:57 UTC |
ba669db | Kathy Tran | 31 October 2023, 19:04:50 UTC | Add topic field in .dockstore.yml for GitHub app tools, workflows, and notebooks (#5713) https://github.com/dockstore/dockstore/issues/5625 https://ucsc-cgl.atlassian.net/browse/DOCK-2444 * Add topic to .dockstore.yml * Reset topicManual if topic is empty string | 31 October 2023, 19:04:50 UTC |
4c12b34 | Charles Overbeck | 25 October 2023, 22:26:56 UTC | Merge tag '1.14.3' into develop 1.14.3 tag | 25 October 2023, 22:26:56 UTC |