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https://github.com/ga4gh/dockstore
05 April 2024, 22:18:50 UTC
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Revision Author Date Message Commit Date
c1c9c46 Stephen Von Worley 07 March 2024, 03:01:31 UTC change lf to cr in diagnostic outputs 07 March 2024, 03:01:31 UTC
238c8ad Stephen Von Worley 07 March 2024, 02:38:02 UTC test cr lf 2 07 March 2024, 02:38:02 UTC
374c0a0 Stephen Von Worley 06 March 2024, 19:03:41 UTC make periodic and request diagnostics separately enableable 06 March 2024, 19:03:41 UTC
e5aacf9 Stephen Von Worley 06 March 2024, 02:36:49 UTC add CensorHelper 06 March 2024, 02:36:49 UTC
b2a8856 Stephen Von Worley 06 March 2024, 01:38:31 UTC improve test 06 March 2024, 01:38:31 UTC
6f59b42 Stephen Von Worley 06 March 2024, 01:02:59 UTC refactor 06 March 2024, 01:02:59 UTC
56eca74 Stephen Von Worley 05 March 2024, 18:54:41 UTC refactor 05 March 2024, 18:54:41 UTC
18bbb95 Stephen Von Worley 05 March 2024, 18:01:33 UTC rename, add frequency resource and test 05 March 2024, 18:01:33 UTC
179da48 Stephen Von Worley 05 March 2024, 01:10:43 UTC add config, refactor, add df output 05 March 2024, 01:10:43 UTC
c453fbb Stephen Von Worley 04 March 2024, 21:57:25 UTC merge develop 04 March 2024, 21:57:25 UTC
88b32d1 Denis Yuen 04 March 2024, 18:32:46 UTC Add security checklist checkbox (#5826) * Update PULL_REQUEST_TEMPLATE.md 04 March 2024, 18:32:46 UTC
6e22551 Steve Von Worley 04 March 2024, 18:07:57 UTC improve error message when scalar is supplied where list is expected https://ucsc-cgl.atlassian.net/browse/DOCK-2468 #5683 04 March 2024, 18:07:57 UTC
c345b41 Nayeon Hyun 01 March 2024, 18:55:19 UTC SEAB-5910: add topic selection to elasticsearch (#5827) * add topic selection to elasticsearch * update comment 01 March 2024, 18:55:19 UTC
1e7da37 Kathy Tran 28 February 2024, 14:14:59 UTC Remove deprecated aggregated executions field (#5824) https://ucsc-cgl.atlassian.net/browse/SEAB-6246 28 February 2024, 14:14:59 UTC
54338e0 Lucia Zhang 27 February 2024, 21:59:04 UTC SEAB-6266: Update deprecated CircleCI images (#5823) * try bumping linux image to 2023.10.1 * try updating remote docker to docker24 27 February 2024, 21:59:04 UTC
9fc2412 Denis Yuen 26 February 2024, 19:13:21 UTC Merge branch 'hotfix/1.15.2' into develop 26 February 2024, 19:13:21 UTC
19c99aa dependabot[bot] 26 February 2024, 15:45:12 UTC Bump org.apache.commons:commons-compress from 1.24.0 to 1.26.0 in /bom-internal (#5816) * Bump org.apache.commons:commons-compress in /bom-internal Bumps org.apache.commons:commons-compress from 1.24.0 to 1.26.0. --- updated-dependencies: - dependency-name: org.apache.commons:commons-compress dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update related enforced libraries --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> 26 February 2024, 15:45:12 UTC
2006206 Denis Yuen 26 February 2024, 15:29:56 UTC Reset version 26 February 2024, 15:29:56 UTC
a62e58c Denis Yuen 26 February 2024, 15:27:20 UTC Update artifacts 26 February 2024, 15:27:20 UTC
970cbb9 Denis Yuen 23 February 2024, 22:22:55 UTC Fix basic search authors (#5819) * add revealing test * add fix for multiple relevant authors in old search results 23 February 2024, 22:22:55 UTC
91643fe Denis Yuen 23 February 2024, 18:22:00 UTC fix scala bytecode compilation and make property (#5820) * fix scala bytecode compilation and make property * tie in a couple other likely areas to be missed 23 February 2024, 18:22:00 UTC
71ecf9e Stephen Von Worley 23 February 2024, 16:30:01 UTC add comment [skip ci] 23 February 2024, 16:30:01 UTC
d56e9a8 Stephen Von Worley 23 February 2024, 16:27:01 UTC checkstyle + tweaks 23 February 2024, 16:27:01 UTC
368b0c9 Stephen Von Worley 23 February 2024, 15:52:12 UTC add censoring code, refactor 23 February 2024, 15:52:12 UTC
5094aeb Stephen Von Worley 23 February 2024, 00:45:35 UTC refactor 23 February 2024, 00:45:35 UTC
3ff70ef Stephen Von Worley 22 February 2024, 23:33:44 UTC next revision 22 February 2024, 23:33:44 UTC
9fadbbf dependabot[bot] 22 February 2024, 18:14:23 UTC Bump org.postgresql:postgresql from 42.4.3 to 42.7.2 in /bom-internal (#5814) * Bump org.postgresql:postgresql from 42.4.3 to 42.7.2 in /bom-internal Bumps [org.postgresql:postgresql](https://github.com/pgjdbc/pgjdbc) from 42.4.3 to 42.7.2. - [Release notes](https://github.com/pgjdbc/pgjdbc/releases) - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md) - [Commits](https://github.com/pgjdbc/pgjdbc/commits) --- updated-dependencies: - dependency-name: org.postgresql:postgresql dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update transitive dependency --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> 22 February 2024, 18:14:23 UTC
cb6f9dd Steve Von Worley 22 February 2024, 16:20:07 UTC remove deprecated properties from Entry https://ucsc-cgl.atlassian.net/browse/SEAB-6083 22 February 2024, 16:20:07 UTC
f4aa0bf Stephen Von Worley 22 February 2024, 16:17:11 UTC use jersey eventlisteners 22 February 2024, 16:17:11 UTC
e8415a9 Stephen Von Worley 22 February 2024, 06:30:55 UTC skeleton 22 February 2024, 06:30:55 UTC
0de8f19 Denis Yuen 16 February 2024, 15:39:45 UTC Partial update to java 21 (#5805) * iterate dockstore version * test it all with Java 21 * fix version in github actions * just compile with newer scala (but do not use it as a dependency) 16 February 2024, 15:39:45 UTC
4910d24 Denis Yuen 15 February 2024, 15:40:43 UTC Merge tag '1.15.1' into develop testing out release process 15 February 2024, 15:40:43 UTC
811c8e8 Denis Yuen 15 February 2024, 15:40:36 UTC Merge branch 'hotfix/1.15.1' 15 February 2024, 15:40:36 UTC
284dab1 Denis Yuen 15 February 2024, 15:40:20 UTC Reset version 15 February 2024, 15:40:20 UTC
5e45525 Denis Yuen 15 February 2024, 15:37:54 UTC Update artifacts 15 February 2024, 15:37:54 UTC
f96d36b Steve Von Worley 15 February 2024, 15:22:59 UTC DOCK-2512: Fix pushes of annotated tags (#5809) * fix pushes of annotated tags * add some tests to make sure branch pushes work, comment 15 February 2024, 15:22:59 UTC
8c96b1b Denis Yuen 06 February 2024, 19:54:45 UTC Merge tag '1.15.0' into develop release 06 February 2024, 19:54:45 UTC
316fda7 Denis Yuen 06 February 2024, 19:54:17 UTC Merge branch 'release/1.15.0' 06 February 2024, 19:54:17 UTC
24bdf4d Denis Yuen 06 February 2024, 19:53:39 UTC Reset version 06 February 2024, 19:53:39 UTC
5bd1911 Denis Yuen 06 February 2024, 19:49:42 UTC Update artifacts 06 February 2024, 19:49:42 UTC
73a34aa Denis Yuen 02 February 2024, 20:12:13 UTC Merge branch 'release/1.15.0' into develop 02 February 2024, 20:12:13 UTC
ce2337e Denis Yuen 02 February 2024, 18:47:35 UTC Reset version 02 February 2024, 18:47:35 UTC
d8c4b15 Denis Yuen 02 February 2024, 18:42:43 UTC Update artifacts 02 February 2024, 18:42:43 UTC
6e61804 Kathy Tran 02 February 2024, 18:19:13 UTC Separate execution metrics by status (#5800) https://ucsc-cgl.atlassian.net/browse/SEAB-6199 02 February 2024, 18:19:13 UTC
970e4ed Denis Yuen 26 January 2024, 18:21:57 UTC search workflow version as well as default version for authors (#5797) * search workflow version as well as default version for authors * sanity check test 26 January 2024, 18:21:57 UTC
7b3ffed Denis Yuen 25 January 2024, 23:04:23 UTC Merge branch 'release/1.15.0' into develop 25 January 2024, 23:04:23 UTC
92be68c Denis Yuen 25 January 2024, 23:04:01 UTC add zenodo patch (#5795) * add patch * Update ZenodoHelper.java 25 January 2024, 23:04:01 UTC
edbb65e Denis Yuen 23 January 2024, 22:00:57 UTC Merge branch 'release/1.15.0' into develop 23 January 2024, 22:00:57 UTC
05a7424 Denis Yuen 23 January 2024, 21:47:01 UTC Reset version 23 January 2024, 21:47:01 UTC
43415aa Denis Yuen 23 January 2024, 21:44:30 UTC Update artifacts 23 January 2024, 21:44:30 UTC
fe81bc5 Kathy Tran 23 January 2024, 20:11:06 UTC Fix duplicate validator versions in get aggregated metrics response for "ALL" platform (#5789) https://ucsc-cgl.atlassian.net/browse/SEAB-6183 * Use set for validator versions to remove duplicate response 23 January 2024, 20:11:06 UTC
a159961 dependabot[bot] 23 January 2024, 19:51:34 UTC Bump actions/cache from 3 to 4 (#5787) Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 23 January 2024, 19:51:34 UTC
d542752 Kathy Tran 19 January 2024, 17:52:22 UTC Decode s3 key components (#5788) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 19 January 2024, 17:52:22 UTC
0fcd0cd Denis Yuen 16 January 2024, 21:05:50 UTC Reset version 16 January 2024, 21:05:50 UTC
7654cde Denis Yuen 16 January 2024, 21:01:52 UTC Update artifacts 16 January 2024, 21:01:52 UTC
1355d37 Kathy Tran 16 January 2024, 20:49:27 UTC Add update execution metrics endpoint (#5778) https://ucsc-cgl.atlassian.net/browse/SEAB-5943 16 January 2024, 20:49:27 UTC
85bb103 Kathy Tran 16 January 2024, 19:46:58 UTC Add Aborted and Failed statuses, and new endpoint to support ingesting broad metrics (#5768) https://ucsc-cgl.atlassian.net/browse/SEAB-5963 16 January 2024, 19:46:58 UTC
5bb0db8 dependabot[bot] 15 January 2024, 15:28:05 UTC Bump org.apache.commons:commons-compress from 1.22 to 1.24.0 in /bom-internal (#5775) * Bump org.apache.commons:commons-compress in /bom-internal Bumps org.apache.commons:commons-compress from 1.22 to 1.24.0. --- updated-dependencies: - dependency-name: org.apache.commons:commons-compress dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> 15 January 2024, 15:28:05 UTC
3879929 Denis Yuen 11 January 2024, 18:20:13 UTC clean-up zenodo reference to wrong repo (#5784) 11 January 2024, 18:20:13 UTC
763132a Denis Yuen 11 January 2024, 17:59:39 UTC Merge branch 'release/1.15.0' into develop 11 January 2024, 17:59:39 UTC
30f9872 Steve Von Worley 10 January 2024, 20:50:09 UTC add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 10 January 2024, 20:50:09 UTC
4bad42b Steve Von Worley 10 January 2024, 19:57:17 UTC reduce memory consumption of TRS tools get https://ucsc-cgl.atlassian.net/browse/SEAB-6100 10 January 2024, 19:57:17 UTC
29a4789 Steve Von Worley 10 January 2024, 19:56:15 UTC add version Event on tagged GitHub release https://ucsc-cgl.atlassian.net/browse/SEAB-6096 10 January 2024, 19:56:15 UTC
1d22561 Denis Yuen 10 January 2024, 15:35:58 UTC test postgres 13.13 (#5780) * test postgres 13.13 10 January 2024, 15:35:58 UTC
a4aa717 Denis Yuen 03 January 2024, 18:16:45 UTC avro update (#5772) (#5776) 03 January 2024, 18:16:45 UTC
0c1fa47 dependabot[bot] 03 January 2024, 18:15:54 UTC Bump github/codeql-action from 2 to 3 (#5770) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/github/codeql-action/compare/v2...v3) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 03 January 2024, 18:15:54 UTC
fe29ee5 dependabot[bot] 03 January 2024, 15:29:05 UTC Bump actions/upload-pages-artifact from 2 to 3 (#5774) Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 2 to 3. - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/v2...v3) --- updated-dependencies: - dependency-name: actions/upload-pages-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 03 January 2024, 15:29:05 UTC
fb52400 Denis Yuen 02 January 2024, 16:55:25 UTC upgrades, test them (#5772) 02 January 2024, 16:55:25 UTC
0e99533 dependabot[bot] 02 January 2024, 16:54:22 UTC Bump actions/deploy-pages from 3 to 4 (#5773) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 3 to 4. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 02 January 2024, 16:54:22 UTC
07f2c2f Denis Yuen 18 December 2023, 21:14:16 UTC enforce entryname is null or nonempty for lambda events - sorting issue (#5769) * make lambda events match workflows for naming 18 December 2023, 21:14:16 UTC
3c3b4e6 Denis Yuen 14 December 2023, 22:30:36 UTC Merge branch 'release/1.15.0' into develop 14 December 2023, 22:30:36 UTC
1f59ba3 Nayeon Hyun 14 December 2023, 16:56:20 UTC DOCK-2376: remove deprecated author and email field in Entry (#5706) * Update artifacts * remove author and email field * drop columns * partial revert * make things a bit more backwards compatible for the cli --------- Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> 14 December 2023, 16:56:20 UTC
b2b9399 Charles Overbeck 13 December 2023, 22:13:54 UTC Review tables for dbcreatedate and dbupdatedate (#5767) SEAB-3083 13 December 2023, 22:13:54 UTC
0a4fd86 dependabot[bot] 13 December 2023, 19:32:01 UTC Bump actions/configure-pages from 3 to 4 (#5766) Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 3 to 4. - [Release notes](https://github.com/actions/configure-pages/releases) - [Commits](https://github.com/actions/configure-pages/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/configure-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 13 December 2023, 19:32:01 UTC
d358ca0 dependabot[bot] 13 December 2023, 19:31:44 UTC Bump actions/deploy-pages from 2 to 3 (#5765) Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 2 to 3. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/v2...v3) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 13 December 2023, 19:31:44 UTC
c92f92c Denis Yuen 08 December 2023, 20:32:39 UTC Reset version 08 December 2023, 20:32:39 UTC
acd13bf Denis Yuen 08 December 2023, 20:29:59 UTC Update artifacts 08 December 2023, 20:29:59 UTC
83095ae Steve Von Worley 05 December 2023, 00:46:08 UTC fix nextflow 500 error in getContent() https://ucsc-cgl.atlassian.net/browse/DOCK-2476 https://github.com/dockstore/dockstore/issues/5714 05 December 2023, 00:46:08 UTC
021bf96 Denis Yuen 01 December 2023, 20:19:49 UTC fix from https://github.com/dockstore/zenodo-client/pull/27 (#5755) 01 December 2023, 20:19:49 UTC
f827ff7 dependabot[bot] 01 December 2023, 16:15:06 UTC Bump actions/setup-java from 3 to 4 (#5764) * Bump actions/setup-java from 3 to 4 Bumps [actions/setup-java](https://github.com/actions/setup-java) from 3 to 4. - [Release notes](https://github.com/actions/setup-java/releases) - [Commits](https://github.com/actions/setup-java/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/setup-java dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * Update mvnw.yml * Update macos_instructions.yml --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> 01 December 2023, 16:15:06 UTC
ac56134 Steve Von Worley 30 November 2023, 23:46:51 UTC add endpoint that retrieves an Entry by alias https://ucsc-cgl.atlassian.net/browse/SEAB-6025 30 November 2023, 23:46:51 UTC
2284c1a dependabot[bot] 30 November 2023, 22:11:49 UTC Bump ch.qos.logback:logback-classic from 1.4.11 to 1.4.12 in /bom-internal (#5761) * Bump ch.qos.logback:logback-classic in /bom-internal Bumps [ch.qos.logback:logback-classic](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-classic dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> 30 November 2023, 22:11:49 UTC
de3fcd1 dependabot[bot] 30 November 2023, 22:11:38 UTC Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal (#5757) * Bump ch.qos.logback:logback-core from 1.4.11 to 1.4.12 in /bom-internal Bumps [ch.qos.logback:logback-core](https://github.com/qos-ch/logback) from 1.4.11 to 1.4.12. - [Commits](https://github.com/qos-ch/logback/compare/v_1.4.11...v_1.4.12) --- updated-dependencies: - dependency-name: ch.qos.logback:logback-core dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> 30 November 2023, 22:11:38 UTC
af389b7 Charles Overbeck 30 November 2023, 17:21:37 UTC Restore disabled BitBucket test (#5762) Needed to adjust for quay.io now being case-sensitive SEAB-2063 30 November 2023, 17:21:37 UTC
8e89ee7 Steve Von Worley 29 November 2023, 00:33:25 UTC fix checker workflow configuration methods in Service and Notebook https://ucsc-cgl.atlassian.net/browse/SEAB-6022 29 November 2023, 00:33:25 UTC
ba09bb2 Nayeon Hyun 21 November 2023, 20:51:41 UTC DOCK-2440: allow null values in sorting in the github apps logs table (#5749) * allow null values in sorting * add entryname in search 21 November 2023, 20:51:41 UTC
2e734c2 Steve Von Worley 21 November 2023, 19:47:14 UTC don't display certain Events when the referenced entry is unpublished https://ucsc-cgl.atlassian.net/browse/SEAB-5422 21 November 2023, 19:47:14 UTC
77df419 Kathy Tran 21 November 2023, 14:08:59 UTC Allow the submission of task metrics (#5738) https://ucsc-cgl.atlassian.net/browse/SEAB-5944 21 November 2023, 14:08:59 UTC
077e75a Steve Von Worley 18 November 2023, 01:04:05 UTC remove "dockstore.org" from allowable values for "delete stubbed workflow" endpoint https://ucsc-cgl.atlassian.net/browse/DOCK-1946 #4513 18 November 2023, 01:04:05 UTC
70435d1 dependabot[bot] 17 November 2023, 18:51:27 UTC Bump org.json:json from 20230227 to 20231013 in /bom-internal (#5710) * Bump org.json:json from 20230227 to 20231013 in /bom-internal Bumps [org.json:json](https://github.com/douglascrockford/JSON-java) from 20230227 to 20231013. - [Release notes](https://github.com/douglascrockford/JSON-java/releases) - [Changelog](https://github.com/stleary/JSON-java/blob/master/docs/RELEASES.md) - [Commits](https://github.com/douglascrockford/JSON-java/commits) --- updated-dependencies: - dependency-name: org.json:json dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * Update license file --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> 17 November 2023, 18:51:27 UTC
afc2257 Charles Overbeck 16 November 2023, 23:56:00 UTC Only indicate admin/curator for yourself or if you're admin SEAB-5786 I removed the SLIM_USER_FILTER because I noticed that all the fields it's referencing have @JsonIgnore anyway. 16 November 2023, 23:56:00 UTC
e31557b David Steinberg 16 November 2023, 21:21:25 UTC Update cromwell version to latest on jfrog (#5741) * Update cromwell version to latest on jfrog * Add flattened pom * Disable failing BitBucket test --------- Co-authored-by: Charles Overbeck <coverbec@ucsc.edu> 16 November 2023, 21:21:25 UTC
0aa977b Nayeon Hyun 15 November 2023, 17:05:11 UTC DOCK-2440: added sort and filter values on GitHub Apps Logs endpoints (#5730) * added offset, sort, filter values on endpoints * fix test * sonarcloud * codacy * pr review * added test for filter * oops * review * review * add max property * add s 15 November 2023, 17:05:11 UTC
d039384 Nayeon Hyun 14 November 2023, 17:46:57 UTC remove security property (#5739) 14 November 2023, 17:46:57 UTC
5cef678 Steve Von Worley 07 November 2023, 22:32:33 UTC enable search in notebook EntryTypeMetadata https://ucsc-cgl.atlassian.net/browse/SEAB-6002 07 November 2023, 22:32:33 UTC
7358d3b Steve Von Worley 02 November 2023, 17:12:02 UTC add GitHub codespaces import URL property to UI config https://ucsc-cgl.atlassian.net/browse/SEAB-5951 02 November 2023, 17:12:02 UTC
4cc27fb Steve Von Worley 01 November 2023, 19:18:42 UTC support notebook "launch to GitHub Codespace" https://ucsc-cgl.atlassian.net/browse/SEAB-5951 01 November 2023, 19:18:42 UTC
90436a8 Kathy Tran 01 November 2023, 13:00:57 UTC Add AI topic column and AI topic selection option (#5716) https://ucsc-cgl.atlassian.net/browse/SEAB-5909 * Add topicAI * Specify maxLength in openapi * Add comment about why hosted entries can't have automatic topic selection * Only change topic selection for an empty string topic if the selection is manual 01 November 2023, 13:00:57 UTC
ba669db Kathy Tran 31 October 2023, 19:04:50 UTC Add topic field in .dockstore.yml for GitHub app tools, workflows, and notebooks (#5713) https://github.com/dockstore/dockstore/issues/5625 https://ucsc-cgl.atlassian.net/browse/DOCK-2444 * Add topic to .dockstore.yml * Reset topicManual if topic is empty string 31 October 2023, 19:04:50 UTC
4c12b34 Charles Overbeck 25 October 2023, 22:26:56 UTC Merge tag '1.14.3' into develop 1.14.3 tag 25 October 2023, 22:26:56 UTC
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