7641699 | ianmarshall | 16 October 2020, 20:48:32 UTC | Merge remote-tracking branch 'origin/master' into im_20201015_loinc_versioned_resourceids | 16 October 2020, 20:48:32 UTC |
6e0754d | ianmarshall | 16 October 2020, 20:47:19 UTC | restore maven-wrapper.properties file inadvertently deleted. | 16 October 2020, 20:47:19 UTC |
3d041fe | ianmarshall | 16 October 2020, 20:40:54 UTC | restore maven-wrapper.properties file inadvertently deleted. | 16 October 2020, 20:40:54 UTC |
3cfeff8 | ianmarshall | 16 October 2020, 20:39:48 UTC | restore maven-wrapper.properties file inadvertently deleted. | 16 October 2020, 20:39:48 UTC |
f3639ee | ianmarshall | 16 October 2020, 20:30:37 UTC | Changes to terminology loader to support preserving the original resource IDs for LOINC even when multiple versions are loaded. | 16 October 2020, 20:30:37 UTC |
a25aa37 | jamesagnew | 16 October 2020, 18:52:40 UTC | Update to #1607 | 16 October 2020, 18:52:40 UTC |
66e3637 | jamesagnew | 13 October 2020, 16:11:58 UTC | Add hardcoded anchor name to docs | 13 October 2020, 16:11:58 UTC |
7903b2b | jamesagnew | 13 October 2020, 15:42:56 UTC | License headers | 13 October 2020, 15:43:09 UTC |
aa3da9b | James Agnew | 13 October 2020, 00:47:14 UTC | Bump bootstrap version (#2128) * Bump bootstrap version * Add changelog * Resolve fixme * Rmove test code | 13 October 2020, 00:47:14 UTC |
7d15085 | jamesagnew | 13 October 2020, 00:45:02 UTC | Credit for #2118 | 13 October 2020, 00:45:02 UTC |
90016b2 | jamesagnew | 12 October 2020, 21:45:01 UTC | Credit for #2059 | 12 October 2020, 21:45:01 UTC |
1435540 | Tuomo Ala-Vannesluoma | 12 October 2020, 21:42:03 UTC | Improve synchronous searching by providing offset & limit support (#2059) * Improve synchronous searching by providing offset & limit support Add support for offset querying which leverages paging at the query level Add configuration for search default page size and search maximum page size If using offset, always use synchronous searching to avoid extra database insert/update etc. When using offset, only calculate count if it's wanted Validate params closer to provider and handle size if search returned "all" (or last) * Review and test fixes Comment _offset as nonstandard parameter Make synchronous search always count the total value (for now) Fix issue with FulltextSearchSvcImpl mutating param map Dirty fix for BaseJpaTest (not sure how to fix the including resources issue) * Remove temporary count querying fix for synchronous loads * Fix offsetting of everything operations, do not drop zero offset * Fix jpa test default and maximum page size, add some fixmes to tests before resolved * Ignore one failing test, fix others * Fix Dereferenced variable may be null * Fix everything paging in R4 by adding DISTINCT if synchronous load is used Also fix assertion of size when hitting fetchSizeDefaultMaximum * Add documentation about offset annotation and paging Co-authored-by: James Agnew <jamesagnew@gmail.com> | 12 October 2020, 21:42:03 UTC |
a32397d | Joel Schneider (NMDP) | 12 October 2020, 21:38:31 UTC | add CorsInterceptorTest (#2126) * add simple CorsInterceptorTest * add relevant exposedHeaders to custom CorsConfiguration * use SLF4J Logger.info() instead of System.err.println(), and run the test assertions first * Add logback-classic dependency to test scope, to enable SLF4J logging within unit tests. (SLF4J defaults to NOP binding if no binding found on classpath, see also http://www.slf4j.org/codes.html#StaticLoggerBinder) | 12 October 2020, 21:38:31 UTC |
e4214a4 | vedion | 12 October 2020, 21:37:12 UTC | Exposing hasIncludes PersistedJpaBundleProvider (#2047) Co-authored-by: ahn <anders.havn@systematic.com> | 12 October 2020, 21:37:12 UTC |
bd6feec | jamesagnew | 12 October 2020, 21:19:15 UTC | Initial credit for #2118 | 12 October 2020, 21:19:15 UTC |
844624b | Josh Collins | 12 October 2020, 21:16:00 UTC | RDF Support in HAPI FHIR (#2118) * RDF Support in HAPI FHIR * Ability to read/write FHIR resources as RDF (turtle serialization) * Test suite to test roundtrip-ability of RDF parser * Add null checks to appease LGTM * Correct null check logic | 12 October 2020, 21:16:00 UTC |
3297e50 | Oliver Egger | 12 October 2020, 21:07:27 UTC | make invoke available for derived classes (#2125) | 12 October 2020, 21:07:27 UTC |
3ba80de | jamesagnew | 11 October 2020, 19:35:28 UTC | Add to date equals comparison | 11 October 2020, 19:35:28 UTC |
81d7a1e | jamesagnew | 11 October 2020, 19:28:39 UTC | Credit for #2112 | 11 October 2020, 19:29:06 UTC |
8294b8d | Oliver Egger | 11 October 2020, 19:25:37 UTC | add namespace, prefix for attributes (xml:lang) (#2112) | 11 October 2020, 19:25:37 UTC |
576f6ef | jamesagnew | 09 October 2020, 15:58:00 UTC | Credit for #1607 | 09 October 2020, 15:58:00 UTC |
cad3ba5 | abrsystematic | 09 October 2020, 15:51:50 UTC | Fix gettimezone performanceissue (#1607) * [(release_3_7_SSE)] cache timezone since timezone.gettimezone is static synchronized and performs poorly * [(fixgettimezoneperformanceissue)] fiximport | 09 October 2020, 15:51:50 UTC |
d5b533c | Tadgh | 09 October 2020, 13:06:38 UTC | Merge pull request #2123 from jamesagnew/gg_20201008_baddeps Update hibernate core and validator | 09 October 2020, 13:06:38 UTC |
e8d844f | jamesagnew | 09 October 2020, 11:53:19 UTC | Merge branch 'master' into gg_20201008_baddeps | 09 October 2020, 11:53:19 UTC |
2134d40 | James Agnew | 09 October 2020, 11:52:46 UTC | Account for timezones in lastUpdated search (#2113) * Add test * Fix * Add changelog * Test fixes * Test fix * Test fixes * Resolve fixme * Test fixes * Remove debug logs * Try to get CI tests passing again | 09 October 2020, 11:52:46 UTC |
cbfadd4 | Tadgh | 08 October 2020, 22:40:44 UTC | Merge branch 'master' into gg_20201008_baddeps | 08 October 2020, 22:40:44 UTC |
375552a | Tadgh | 08 October 2020, 18:15:57 UTC | Update hibernate core and validator | 08 October 2020, 18:15:57 UTC |
a44037d | IanMMarshall | 08 October 2020, 18:04:49 UTC | Merge pull request #2122 from jamesagnew/im_20201007_conceptmap_sourcesystemversion Fixed loader so that it now sets source system version for ConceptMap… | 08 October 2020, 18:04:49 UTC |
d2aae36 | James Agnew | 08 October 2020, 00:08:18 UTC | Rewrite deferred interceptor callback framework (#2121) * Rewrite deferred interceptor callback framework * Improve deferred handling * Null guard * Test fix | 08 October 2020, 00:08:18 UTC |
476eba6 | ianmarshall | 07 October 2020, 19:07:25 UTC | Fixed loader so that it now sets source system version for ConceptMap resources. | 07 October 2020, 19:07:25 UTC |
ebbdafb | IanMMarshall | 07 October 2020, 16:07:23 UTC | Merge pull request #2120 from jamesagnew/im_20201005_loincpartlink_fix Im 20201005 loincpartlink fix | 07 October 2020, 16:07:23 UTC |
f85f7c0 | Tadgh | 07 October 2020, 15:13:45 UTC | Merge pull request #2117 from jamesagnew/gg_20201006_dep_update Update dependencies | 07 October 2020, 15:13:45 UTC |
46b2fde | ianmarshall | 07 October 2020, 15:07:34 UTC | Fixed tests to accommodate suggested changes from code review. | 07 October 2020, 15:07:34 UTC |
1bac646 | IanMMarshall | 07 October 2020, 15:01:54 UTC | Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/LoadedFileDescriptors.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 07 October 2020, 15:01:54 UTC |
e24e233 | IanMMarshall | 07 October 2020, 15:01:47 UTC | Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/LoadedFileDescriptors.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 07 October 2020, 15:01:47 UTC |
0f39eeb | ianmarshall | 07 October 2020, 01:22:09 UTC | Bug fix and test improvements. | 07 October 2020, 01:22:09 UTC |
f347f95 | Tadgh | 06 October 2020, 23:04:10 UTC | rollback elastic | 06 October 2020, 23:04:10 UTC |
47207e1 | Tadgh | 06 October 2020, 21:20:33 UTC | Merge branch 'gg_20201006_dep_update' of github.com:jamesagnew/hapi-fhir into gg_20201006_dep_update | 06 October 2020, 21:20:33 UTC |
5a29fd9 | Tadgh | 06 October 2020, 21:20:11 UTC | rollback the elastic changes | 06 October 2020, 21:20:11 UTC |
f044f9c | ianmarshall | 06 October 2020, 18:55:57 UTC | Merge remote-tracking branch 'origin/master' into im_20201005_loincpartlink_fix | 06 October 2020, 18:55:57 UTC |
d9841e5 | ianmarshall | 06 October 2020, 18:36:23 UTC | Restore ability to load LOINC PartLink data from a single file for pre-2.68 versions. | 06 October 2020, 18:36:23 UTC |
bac43d4 | Tadgh | 06 October 2020, 18:14:17 UTC | Update dependencies | 06 October 2020, 18:14:17 UTC |
edbd089 | jamesagnew | 06 October 2020, 09:52:08 UTC | Docs update | 06 October 2020, 09:52:22 UTC |
ce54d28 | IanMMarshall | 05 October 2020, 20:24:17 UTC | Merge pull request #2116 from jamesagnew/im_2020_09_29_term_doc_updates Im 2020 09 29 term doc updates | 05 October 2020, 20:24:17 UTC |
5ec1284 | IanMMarshall | 05 October 2020, 19:14:39 UTC | Apply suggestions from code review Edits per code review. Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 05 October 2020, 19:14:39 UTC |
30e50ba | ianmarshall | 05 October 2020, 18:08:29 UTC | Improvements to terminology documentation. | 05 October 2020, 18:08:29 UTC |
4ca739e | ianmarshall | 05 October 2020, 16:02:01 UTC | Improvements to terminology documentation. | 05 October 2020, 16:02:01 UTC |
03bd944 | ianmarshall | 05 October 2020, 14:13:08 UTC | Fix typo in changelog. | 05 October 2020, 14:13:08 UTC |
2258d37 | ianmarshall | 05 October 2020, 13:02:00 UTC | Documentation for terminology. | 05 October 2020, 13:02:00 UTC |
8613e76 | ianmarshall | 05 October 2020, 01:20:19 UTC | Documentation for terminology. | 05 October 2020, 01:20:19 UTC |
f1710fd | IanMMarshall | 01 October 2020, 16:24:40 UTC | Merge pull request #2081 from jamesagnew/feature_2020_09_02_term_multi_version_support Feature 2020 09 02 term multi version support | 01 October 2020, 16:24:40 UTC |
7899837 | ianmarshall | 01 October 2020, 02:04:08 UTC | Replaced references to SystemIdentifier with SystemUrlAndVersion. | 01 October 2020, 02:04:08 UTC |
90f1981 | ianmarshall | 30 September 2020, 22:10:57 UTC | Updated tests for missed dstu2 code coverage. | 30 September 2020, 22:10:57 UTC |
8760fcb | Tadgh | 30 September 2020, 18:37:47 UTC | Merge pull request #2109 from jamesagnew/gg_20200930-accessor-name Rename accessors, fix whitespace | 30 September 2020, 18:37:47 UTC |
66a0115 | Tadgh | 30 September 2020, 15:13:40 UTC | Missed a space | 30 September 2020, 15:13:40 UTC |
ca52268 | Tadgh | 30 September 2020, 15:11:56 UTC | Rename accessors, fix whitespace | 30 September 2020, 15:11:56 UTC |
6fc1c5c | jamesagnew | 30 September 2020, 09:42:09 UTC | Add license headers | 30 September 2020, 09:42:09 UTC |
dc34436 | ianmarshall | 30 September 2020, 01:12:27 UTC | Changes per code review. | 30 September 2020, 01:12:27 UTC |
8e7b4e8 | ianmarshall | 30 September 2020, 01:05:28 UTC | Changes per code review. | 30 September 2020, 01:05:28 UTC |
d71121e | Ken Stevens | 29 September 2020, 21:37:09 UTC | oops | 29 September 2020, 21:37:09 UTC |
09d0923 | Ken Stevens | 29 September 2020, 21:27:43 UTC | empi bugfixes and enhancements (#2104) | 29 September 2020, 21:27:43 UTC |
c593958 | IanMMarshall | 29 September 2020, 19:16:46 UTC | Apply suggestions from code review Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 19:16:46 UTC |
d63c15e | IanMMarshall | 29 September 2020, 18:27:57 UTC | Apply suggestions from code review Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:27:57 UTC |
43c16e1 | IanMMarshall | 29 September 2020, 18:27:03 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:27:03 UTC |
43b6bd3 | IanMMarshall | 29 September 2020, 18:26:30 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:26:30 UTC |
2be47b5 | IanMMarshall | 29 September 2020, 18:18:21 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:18:21 UTC |
b8531e5 | IanMMarshall | 29 September 2020, 18:18:00 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:18:00 UTC |
3940e75 | IanMMarshall | 29 September 2020, 18:17:36 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:17:36 UTC |
6aa1a5e | IanMMarshall | 29 September 2020, 18:17:19 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:17:19 UTC |
ebb3fa0 | IanMMarshall | 29 September 2020, 18:16:56 UTC | Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:16:56 UTC |
10620a8 | IanMMarshall | 29 September 2020, 18:16:13 UTC | Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/dstu3/BaseJpaResourceProviderCodeSystemDstu3.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 18:16:13 UTC |
26688aa | IanMMarshall | 29 September 2020, 16:11:56 UTC | Update hapi-fhir-base/src/main/resources/ca/uhn/fhir/i18n/hapi-messages.properties Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> | 29 September 2020, 16:11:56 UTC |
42b4e9a | ianmarshall | 28 September 2020, 12:45:59 UTC | Add change log. | 28 September 2020, 12:45:59 UTC |
9d8664c | ianmarshall | 28 September 2020, 01:09:06 UTC | Additional tests and updates. | 28 September 2020, 01:09:06 UTC |
e86d9de | ianmarshall | 27 September 2020, 21:45:15 UTC | Additional tests. | 27 September 2020, 21:45:15 UTC |
732624b | ianmarshall | 26 September 2020, 02:55:01 UTC | Fix broken JUnit test. | 26 September 2020, 02:55:01 UTC |
1dc4a53 | ianmarshall | 26 September 2020, 01:43:15 UTC | Fixes to terminology loader. | 26 September 2020, 01:43:15 UTC |
47244c5 | ianmarshall | 25 September 2020, 13:10:07 UTC | Merge remote-tracking branch 'origin/feature_2020_09_02_term_multi_version_support' into im_20200728_term_multi_version_support # Conflicts: # hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/dao/IFhirResourceDaoCodeSystem.java # hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java # hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/BaseLoincHandler.java # hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincIeeeMedicalDeviceCodeHandler.java # hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java # hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/CommonCodeSystemsTerminologyService.java | 25 September 2020, 13:10:07 UTC |
6f98744 | ianmarshall | 25 September 2020, 12:54:17 UTC | Merge remote-tracking branch 'origin/master' into feature_2020_09_02_term_multi_version_support | 25 September 2020, 12:54:17 UTC |
2bceacd | ianmarshall | 25 September 2020, 12:51:53 UTC | Update loader to ensure that ConceptMap and ValueSet Ids are unique for each version loaded. | 25 September 2020, 12:51:53 UTC |
5fe46be | ianmarshall | 24 September 2020, 22:51:47 UTC | Validate code changes and new tests. | 24 September 2020, 22:51:47 UTC |
e5daea1 | ianmarshall | 23 September 2020, 21:17:07 UTC | Additional cleanup and migration tasks. | 23 September 2020, 21:17:07 UTC |
dffc02a | ianmarshall | 23 September 2020, 20:51:18 UTC | Missing fixes for DSTU3 and R5. | 23 September 2020, 20:51:18 UTC |
640ee94 | ianmarshall | 23 September 2020, 20:43:22 UTC | Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support | 23 September 2020, 20:43:22 UTC |
ceb5ec6 | ianmarshall | 23 September 2020, 20:42:29 UTC | Use canonical identifiers for code systems rather than specifying version separately. | 23 September 2020, 20:42:29 UTC |
404abb2 | Frank Tao | 23 September 2020, 19:34:38 UTC | Merge pull request #2094 from jamesagnew/ft_2020_09_16_codesystem_validate Support CodeSystem/$validate-code for R4, R5 | 23 September 2020, 19:34:38 UTC |
3d3d013 | Frank Tao | 23 September 2020, 13:19:06 UTC | Changed import of IdType to r5. | 23 September 2020, 13:19:06 UTC |
e6a6694 | Frank Tao | 23 September 2020, 00:51:20 UTC | Added invalid test cases for DSTU3 | 23 September 2020, 00:51:20 UTC |
b6d86dc | Frank Tao | 23 September 2020, 00:39:20 UTC | Added fail(); in the invalid test cases | 23 September 2020, 00:39:20 UTC |
20661c7 | Frank Tao | 23 September 2020, 00:19:43 UTC | Removed unused import | 23 September 2020, 00:19:43 UTC |
673274a | Frank Tao | 23 September 2020, 00:18:18 UTC | Added invalid test cases for CodeSystem/$validate-code R3 | 23 September 2020, 00:18:18 UTC |
ecc0988 | James Agnew | 22 September 2020, 23:21:34 UTC | Avoid duplicate search param defs in generated CapabilityStatement (#2101) * Avoid duplicate search param defs in generated CapabilityStatement * Add changelog | 22 September 2020, 23:21:34 UTC |
b32c4f0 | ianmarshall | 22 September 2020, 22:46:16 UTC | Fixed lookupCode implementation in InMemoryTerminologyServerValidationSupport. | 22 September 2020, 22:46:16 UTC |
8d9aa41 | jamesagnew | 22 September 2020, 21:13:06 UTC | One more file rename | 22 September 2020, 21:13:06 UTC |
0e5020f | Tadgh | 22 September 2020, 19:12:54 UTC | If statement checking wrong attribute (#2098) | 22 September 2020, 19:12:54 UTC |
4216cee | ianmarshall | 22 September 2020, 18:44:32 UTC | Added and enhanced tests plus fixes arising from tests. | 22 September 2020, 18:44:32 UTC |
3debef6 | jamesagnew | 22 September 2020, 16:39:05 UTC | Rename changelog | 22 September 2020, 16:39:05 UTC |
ef4f3df | James Agnew | 22 September 2020, 13:44:36 UTC | Don't install draft package contents (#2099) * Don't install draft package contents * Add changelog * Add changelog | 22 September 2020, 13:44:36 UTC |
072e63b | James Agnew | 21 September 2020, 19:43:07 UTC | Avoid a crash on double date chains (#2097) * Avoid a crash on double date chains * Add changelog * Address coverage warning | 21 September 2020, 19:43:07 UTC |
f9f8bf6 | ianmarshall | 21 September 2020, 02:02:08 UTC | Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support | 21 September 2020, 02:02:08 UTC |