https://github.com/jamesagnew/hapi-fhir

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7641699 Merge remote-tracking branch 'origin/master' into im_20201015_loinc_versioned_resourceids 16 October 2020, 20:48:32 UTC
6e0754d restore maven-wrapper.properties file inadvertently deleted. 16 October 2020, 20:47:19 UTC
3d041fe restore maven-wrapper.properties file inadvertently deleted. 16 October 2020, 20:40:54 UTC
3cfeff8 restore maven-wrapper.properties file inadvertently deleted. 16 October 2020, 20:39:48 UTC
f3639ee Changes to terminology loader to support preserving the original resource IDs for LOINC even when multiple versions are loaded. 16 October 2020, 20:30:37 UTC
a25aa37 Update to #1607 16 October 2020, 18:52:40 UTC
66e3637 Add hardcoded anchor name to docs 13 October 2020, 16:11:58 UTC
7903b2b License headers 13 October 2020, 15:43:09 UTC
aa3da9b Bump bootstrap version (#2128) * Bump bootstrap version * Add changelog * Resolve fixme * Rmove test code 13 October 2020, 00:47:14 UTC
7d15085 Credit for #2118 13 October 2020, 00:45:02 UTC
90016b2 Credit for #2059 12 October 2020, 21:45:01 UTC
1435540 Improve synchronous searching by providing offset & limit support (#2059) * Improve synchronous searching by providing offset & limit support Add support for offset querying which leverages paging at the query level Add configuration for search default page size and search maximum page size If using offset, always use synchronous searching to avoid extra database insert/update etc. When using offset, only calculate count if it's wanted Validate params closer to provider and handle size if search returned "all" (or last) * Review and test fixes Comment _offset as nonstandard parameter Make synchronous search always count the total value (for now) Fix issue with FulltextSearchSvcImpl mutating param map Dirty fix for BaseJpaTest (not sure how to fix the including resources issue) * Remove temporary count querying fix for synchronous loads * Fix offsetting of everything operations, do not drop zero offset * Fix jpa test default and maximum page size, add some fixmes to tests before resolved * Ignore one failing test, fix others * Fix Dereferenced variable may be null * Fix everything paging in R4 by adding DISTINCT if synchronous load is used Also fix assertion of size when hitting fetchSizeDefaultMaximum * Add documentation about offset annotation and paging Co-authored-by: James Agnew <jamesagnew@gmail.com> 12 October 2020, 21:42:03 UTC
a32397d add CorsInterceptorTest (#2126) * add simple CorsInterceptorTest * add relevant exposedHeaders to custom CorsConfiguration * use SLF4J Logger.info() instead of System.err.println(), and run the test assertions first * Add logback-classic dependency to test scope, to enable SLF4J logging within unit tests. (SLF4J defaults to NOP binding if no binding found on classpath, see also http://www.slf4j.org/codes.html#StaticLoggerBinder) 12 October 2020, 21:38:31 UTC
e4214a4 Exposing hasIncludes PersistedJpaBundleProvider (#2047) Co-authored-by: ahn <anders.havn@systematic.com> 12 October 2020, 21:37:12 UTC
bd6feec Initial credit for #2118 12 October 2020, 21:19:15 UTC
844624b RDF Support in HAPI FHIR (#2118) * RDF Support in HAPI FHIR * Ability to read/write FHIR resources as RDF (turtle serialization) * Test suite to test roundtrip-ability of RDF parser * Add null checks to appease LGTM * Correct null check logic 12 October 2020, 21:16:00 UTC
3297e50 make invoke available for derived classes (#2125) 12 October 2020, 21:07:27 UTC
3ba80de Add to date equals comparison 11 October 2020, 19:35:28 UTC
81d7a1e Credit for #2112 11 October 2020, 19:29:06 UTC
8294b8d add namespace, prefix for attributes (xml:lang) (#2112) 11 October 2020, 19:25:37 UTC
576f6ef Credit for #1607 09 October 2020, 15:58:00 UTC
cad3ba5 Fix gettimezone performanceissue (#1607) * [(release_3_7_SSE)] cache timezone since timezone.gettimezone is static synchronized and performs poorly * [(fixgettimezoneperformanceissue)] fiximport 09 October 2020, 15:51:50 UTC
d5b533c Merge pull request #2123 from jamesagnew/gg_20201008_baddeps Update hibernate core and validator 09 October 2020, 13:06:38 UTC
e8d844f Merge branch 'master' into gg_20201008_baddeps 09 October 2020, 11:53:19 UTC
2134d40 Account for timezones in lastUpdated search (#2113) * Add test * Fix * Add changelog * Test fixes * Test fix * Test fixes * Resolve fixme * Test fixes * Remove debug logs * Try to get CI tests passing again 09 October 2020, 11:52:46 UTC
cbfadd4 Merge branch 'master' into gg_20201008_baddeps 08 October 2020, 22:40:44 UTC
375552a Update hibernate core and validator 08 October 2020, 18:15:57 UTC
a44037d Merge pull request #2122 from jamesagnew/im_20201007_conceptmap_sourcesystemversion Fixed loader so that it now sets source system version for ConceptMap… 08 October 2020, 18:04:49 UTC
d2aae36 Rewrite deferred interceptor callback framework (#2121) * Rewrite deferred interceptor callback framework * Improve deferred handling * Null guard * Test fix 08 October 2020, 00:08:18 UTC
476eba6 Fixed loader so that it now sets source system version for ConceptMap resources. 07 October 2020, 19:07:25 UTC
ebbdafb Merge pull request #2120 from jamesagnew/im_20201005_loincpartlink_fix Im 20201005 loincpartlink fix 07 October 2020, 16:07:23 UTC
f85f7c0 Merge pull request #2117 from jamesagnew/gg_20201006_dep_update Update dependencies 07 October 2020, 15:13:45 UTC
46b2fde Fixed tests to accommodate suggested changes from code review. 07 October 2020, 15:07:34 UTC
1bac646 Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/LoadedFileDescriptors.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 07 October 2020, 15:01:54 UTC
e24e233 Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/LoadedFileDescriptors.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 07 October 2020, 15:01:47 UTC
0f39eeb Bug fix and test improvements. 07 October 2020, 01:22:09 UTC
f347f95 rollback elastic 06 October 2020, 23:04:10 UTC
47207e1 Merge branch 'gg_20201006_dep_update' of github.com:jamesagnew/hapi-fhir into gg_20201006_dep_update 06 October 2020, 21:20:33 UTC
5a29fd9 rollback the elastic changes 06 October 2020, 21:20:11 UTC
f044f9c Merge remote-tracking branch 'origin/master' into im_20201005_loincpartlink_fix 06 October 2020, 18:55:57 UTC
d9841e5 Restore ability to load LOINC PartLink data from a single file for pre-2.68 versions. 06 October 2020, 18:36:23 UTC
bac43d4 Update dependencies 06 October 2020, 18:14:17 UTC
edbd089 Docs update 06 October 2020, 09:52:22 UTC
ce54d28 Merge pull request #2116 from jamesagnew/im_2020_09_29_term_doc_updates Im 2020 09 29 term doc updates 05 October 2020, 20:24:17 UTC
5ec1284 Apply suggestions from code review Edits per code review. Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 05 October 2020, 19:14:39 UTC
30e50ba Improvements to terminology documentation. 05 October 2020, 18:08:29 UTC
4ca739e Improvements to terminology documentation. 05 October 2020, 16:02:01 UTC
03bd944 Fix typo in changelog. 05 October 2020, 14:13:08 UTC
2258d37 Documentation for terminology. 05 October 2020, 13:02:00 UTC
8613e76 Documentation for terminology. 05 October 2020, 01:20:19 UTC
f1710fd Merge pull request #2081 from jamesagnew/feature_2020_09_02_term_multi_version_support Feature 2020 09 02 term multi version support 01 October 2020, 16:24:40 UTC
7899837 Replaced references to SystemIdentifier with SystemUrlAndVersion. 01 October 2020, 02:04:08 UTC
90f1981 Updated tests for missed dstu2 code coverage. 30 September 2020, 22:10:57 UTC
8760fcb Merge pull request #2109 from jamesagnew/gg_20200930-accessor-name Rename accessors, fix whitespace 30 September 2020, 18:37:47 UTC
66a0115 Missed a space 30 September 2020, 15:13:40 UTC
ca52268 Rename accessors, fix whitespace 30 September 2020, 15:11:56 UTC
6fc1c5c Add license headers 30 September 2020, 09:42:09 UTC
dc34436 Changes per code review. 30 September 2020, 01:12:27 UTC
8e7b4e8 Changes per code review. 30 September 2020, 01:05:28 UTC
d71121e oops 29 September 2020, 21:37:09 UTC
09d0923 empi bugfixes and enhancements (#2104) 29 September 2020, 21:27:43 UTC
c593958 Apply suggestions from code review Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 19:16:46 UTC
d63c15e Apply suggestions from code review Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:27:57 UTC
43c16e1 Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:27:03 UTC
43b6bd3 Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:26:30 UTC
2be47b5 Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:18:21 UTC
b8531e5 Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:18:00 UTC
3940e75 Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:17:36 UTC
6aa1a5e Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:17:19 UTC
ebb3fa0 Update hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3ConceptMapTest.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:16:56 UTC
10620a8 Update hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/dstu3/BaseJpaResourceProviderCodeSystemDstu3.java Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 18:16:13 UTC
26688aa Update hapi-fhir-base/src/main/resources/ca/uhn/fhir/i18n/hapi-messages.properties Co-authored-by: Diederik Muylwyk <diederik.muylwyk@gmail.com> 29 September 2020, 16:11:56 UTC
42b4e9a Add change log. 28 September 2020, 12:45:59 UTC
9d8664c Additional tests and updates. 28 September 2020, 01:09:06 UTC
e86d9de Additional tests. 27 September 2020, 21:45:15 UTC
732624b Fix broken JUnit test. 26 September 2020, 02:55:01 UTC
1dc4a53 Fixes to terminology loader. 26 September 2020, 01:43:15 UTC
47244c5 Merge remote-tracking branch 'origin/feature_2020_09_02_term_multi_version_support' into im_20200728_term_multi_version_support # Conflicts: # hapi-fhir-jpaserver-api/src/main/java/ca/uhn/fhir/jpa/api/dao/IFhirResourceDaoCodeSystem.java # hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/BaseTermReadSvcImpl.java # hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/BaseLoincHandler.java # hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/loinc/LoincIeeeMedicalDeviceCodeHandler.java # hapi-fhir-jpaserver-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java # hapi-fhir-validation/src/main/java/org/hl7/fhir/common/hapi/validation/support/CommonCodeSystemsTerminologyService.java 25 September 2020, 13:10:07 UTC
6f98744 Merge remote-tracking branch 'origin/master' into feature_2020_09_02_term_multi_version_support 25 September 2020, 12:54:17 UTC
2bceacd Update loader to ensure that ConceptMap and ValueSet Ids are unique for each version loaded. 25 September 2020, 12:51:53 UTC
5fe46be Validate code changes and new tests. 24 September 2020, 22:51:47 UTC
e5daea1 Additional cleanup and migration tasks. 23 September 2020, 21:17:07 UTC
dffc02a Missing fixes for DSTU3 and R5. 23 September 2020, 20:51:18 UTC
640ee94 Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 23 September 2020, 20:43:22 UTC
ceb5ec6 Use canonical identifiers for code systems rather than specifying version separately. 23 September 2020, 20:42:29 UTC
404abb2 Merge pull request #2094 from jamesagnew/ft_2020_09_16_codesystem_validate Support CodeSystem/$validate-code for R4, R5 23 September 2020, 19:34:38 UTC
3d3d013 Changed import of IdType to r5. 23 September 2020, 13:19:06 UTC
e6a6694 Added invalid test cases for DSTU3 23 September 2020, 00:51:20 UTC
b6d86dc Added fail(); in the invalid test cases 23 September 2020, 00:39:20 UTC
20661c7 Removed unused import 23 September 2020, 00:19:43 UTC
673274a Added invalid test cases for CodeSystem/$validate-code R3 23 September 2020, 00:18:18 UTC
ecc0988 Avoid duplicate search param defs in generated CapabilityStatement (#2101) * Avoid duplicate search param defs in generated CapabilityStatement * Add changelog 22 September 2020, 23:21:34 UTC
b32c4f0 Fixed lookupCode implementation in InMemoryTerminologyServerValidationSupport. 22 September 2020, 22:46:16 UTC
8d9aa41 One more file rename 22 September 2020, 21:13:06 UTC
0e5020f If statement checking wrong attribute (#2098) 22 September 2020, 19:12:54 UTC
4216cee Added and enhanced tests plus fixes arising from tests. 22 September 2020, 18:44:32 UTC
3debef6 Rename changelog 22 September 2020, 16:39:05 UTC
ef4f3df Don't install draft package contents (#2099) * Don't install draft package contents * Add changelog * Add changelog 22 September 2020, 13:44:36 UTC
072e63b Avoid a crash on double date chains (#2097) * Avoid a crash on double date chains * Add changelog * Address coverage warning 21 September 2020, 19:43:07 UTC
f9f8bf6 Merge remote-tracking branch 'origin/master' into im_20200728_term_multi_version_support 21 September 2020, 02:02:08 UTC
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