5818c57 | fenderglass | 19 January 2014, 08:12:23 UTC | supplementary update | 19 January 2014, 08:12:23 UTC |
e438e71 | fenderglass | 16 January 2014, 11:06:32 UTC | ismb2014 | 16 January 2014, 11:06:32 UTC |
54ec831 | fenderglass | 15 January 2014, 22:20:24 UTC | sibelia path fix | 15 January 2014, 22:20:24 UTC |
b0a0b5a | fenderglass | 14 January 2014, 10:44:45 UTC | small usage update | 14 January 2014, 10:44:45 UTC |
2e5adc7 | fenderglass | 14 January 2014, 09:53:13 UTC | install and usage | 14 January 2014, 09:53:13 UTC |
c700bcf | fenderglass | 14 January 2014, 08:46:45 UTC | readme | 14 January 2014, 08:46:45 UTC |
43b5052 | fenderglass | 04 January 2014, 14:37:47 UTC | optimization | 04 January 2014, 14:37:47 UTC |
a52dcb8 | fenderglass | 04 January 2014, 11:30:48 UTC | more accurate handling of known adjacencies | 04 January 2014, 11:30:48 UTC |
fac714c | fenderglass | 25 December 2013, 15:44:43 UTC | small fix | 25 December 2013, 15:44:43 UTC |
b9ad65b | fenderglass | 19 December 2013, 15:26:25 UTC | test script updated, new coord files | 19 December 2013, 15:26:25 UTC |
6a6951c | fenderglass | 11 December 2013, 14:17:17 UTC | bugfixes in assembly graph | 11 December 2013, 14:17:17 UTC |
313f6be | fenderglass | 09 December 2013, 17:58:22 UTC | examples fixed | 09 December 2013, 17:58:22 UTC |
ccf92fa | fenderglass | 09 December 2013, 15:12:08 UTC | small ifx | 09 December 2013, 15:12:08 UTC |
e2345a4 | fenderglass | 26 November 2013, 15:39:10 UTC | some logging | 26 November 2013, 15:39:10 UTC |
ab25327 | fenderglass | 26 November 2013, 13:40:46 UTC | more reliable parsers | 26 November 2013, 13:40:46 UTC |
db29c03 | fenderglass | 21 November 2013, 12:31:54 UTC | new dot parser + nucmer format fixes | 21 November 2013, 12:31:54 UTC |
d7ca7ca | fenderglass | 18 November 2013, 20:54:54 UTC | usage og known adjacencies | 18 November 2013, 20:54:54 UTC |
b178423 | fenderglass | 18 November 2013, 14:04:20 UTC | USAGE improved | 18 November 2013, 14:04:20 UTC |
0c5e62d | fenderglass | 18 November 2013, 13:39:32 UTC | new example | 18 November 2013, 13:39:32 UTC |
7ff9793 | fenderglass | 18 November 2013, 13:30:30 UTC | sankoff algorithm | 18 November 2013, 13:30:30 UTC |
c5e68c1 | fenderglass | 18 November 2013, 11:16:35 UTC | new script | 18 November 2013, 11:16:35 UTC |
3a9fa50 | fenderglass | 18 November 2013, 11:14:53 UTC | aureus config fix | 18 November 2013, 11:14:53 UTC |
9808b68 | fenderglass | 12 November 2013, 13:14:42 UTC | fixed example configs | 12 November 2013, 13:14:42 UTC |
a599a30 | fenderglass | 11 November 2013, 11:43:38 UTC | fixed huge phylogeny bugs | 11 November 2013, 11:43:38 UTC |
4cb0fea | fenderglass | 11 November 2013, 00:00:51 UTC | debug output | 11 November 2013, 00:00:51 UTC |
a020c19 | fenderglass | 07 November 2013, 14:05:09 UTC | debrujin refinement | 07 November 2013, 14:05:09 UTC |
e54c487 | fenderglass | 06 November 2013, 22:56:35 UTC | test script with multiple references | 06 November 2013, 22:56:35 UTC |
b190ee0 | Nikolay Vyahhi | 06 November 2013, 21:32:28 UTC | Python 2.6 minor. | 06 November 2013, 21:32:28 UTC |
1bca0a3 | Nikolay Vyahhi | 06 November 2013, 21:18:21 UTC | Usage minor. | 06 November 2013, 21:18:21 UTC |
f2c9868 | Nikolay Vyahhi | 06 November 2013, 21:17:33 UTC | Applying markdown to readme files. | 06 November 2013, 21:17:33 UTC |
5e574e7 | Nikolay Vyahhi | 06 November 2013, 21:14:30 UTC | README improvements. | 06 November 2013, 21:16:20 UTC |
7d6d083 | Nikolay Vyahhi | 06 November 2013, 20:53:41 UTC | Update USAGE | 06 November 2013, 20:53:41 UTC |
f627e95 | fenderglass | 06 November 2013, 06:54:02 UTC | small ifx | 06 November 2013, 06:54:02 UTC |
3efaa2e | fenderglass | 05 November 2013, 19:47:36 UTC | output dirs | 05 November 2013, 19:47:36 UTC |
e1a5b7f | fenderglass | 05 November 2013, 19:45:23 UTC | readme and examples added | 05 November 2013, 19:45:23 UTC |
ef9c7dd | fenderglass | 04 November 2013, 21:51:37 UTC | minor fix | 04 November 2013, 21:51:37 UTC |
eed23ae | fenderglass | 04 November 2013, 21:48:47 UTC | fasta output | 04 November 2013, 21:48:47 UTC |
9391e37 | fenderglass | 02 November 2013, 21:15:54 UTC | iterative | 02 November 2013, 21:15:54 UTC |
514db70 | fenderglass | 02 November 2013, 10:39:43 UTC | sibelia incorporated | 02 November 2013, 10:39:43 UTC |
3b1aacc | fenderglass | 01 November 2013, 15:54:36 UTC | it works with permutations | 01 November 2013, 15:54:36 UTC |
ecc22e8 | fenderglass | 01 November 2013, 15:03:50 UTC | continue refactoring | 01 November 2013, 15:03:50 UTC |
aa2d169 | fenderglass | 31 October 2013, 20:20:11 UTC | BG with permutations | 31 October 2013, 20:20:11 UTC |
abb3b63 | fenderglass | 31 October 2013, 16:02:29 UTC | new branch | 31 October 2013, 16:02:29 UTC |
23789cd | fenderglass | 31 October 2013, 16:00:38 UTC | slight refactoring | 31 October 2013, 16:00:38 UTC |
25d3aee | fenderglass | 30 October 2013, 08:24:06 UTC | Merge branch 'master' of github.com:fenderglass/refass | 30 October 2013, 08:24:06 UTC |
b54f17e | fenderglass | 30 October 2013, 08:23:59 UTC | minor change | 30 October 2013, 08:23:59 UTC |
9c6e26c | fenderglass | 28 October 2013, 15:34:19 UTC | refactoring | 28 October 2013, 15:34:19 UTC |
9214e85 | fenderglass | 19 October 2013, 22:10:10 UTC | Automatic testing | 19 October 2013, 22:10:10 UTC |
2c683c8 | fenderglass | 17 October 2013, 13:45:12 UTC | with debrujin refinement | 17 October 2013, 13:45:12 UTC |
b853b4e | fenderglass | 17 October 2013, 13:14:06 UTC | new iterative assembly | 17 October 2013, 13:14:06 UTC |
ac49d14 | fenderglass | 07 October 2013, 17:47:42 UTC | partitoning algorithms improved | 07 October 2013, 17:47:42 UTC |
5fe6d4c | fenderglass | 06 October 2013, 15:41:03 UTC | Super rearrangement simpulator 2000 | 06 October 2013, 15:41:03 UTC |
0e89949 | fenderglass | 04 October 2013, 15:25:26 UTC | splitting genomes into blocks | 04 October 2013, 15:25:26 UTC |
c2a27d4 | fenderglass | 02 October 2013, 20:12:07 UTC | more fancy images | 02 October 2013, 20:12:07 UTC |
157f93f | fenderglass | 30 September 2013, 22:09:02 UTC | phylogeny incorporated | 30 September 2013, 22:09:02 UTC |
f3ec594 | fenderglass | 30 September 2013, 11:26:20 UTC | quick and dirty phylogeny | 30 September 2013, 11:26:20 UTC |
270c4d9 | fenderglass | 30 September 2013, 09:46:58 UTC | phylogenetic trees likelihood estimation | 30 September 2013, 09:46:58 UTC |
f6de2c5 | fenderglass | 16 September 2013, 22:39:39 UTC | matching graph partitioning | 16 September 2013, 22:39:39 UTC |
3e5d161 | fenderglass | 30 August 2013, 14:25:38 UTC | breakpoint graph refactoring | 30 August 2013, 14:25:38 UTC |
a13a487 | fenderglass | 29 August 2013, 11:44:22 UTC | something changed | 29 August 2013, 11:44:22 UTC |
4cb396a | fenderglass | 28 August 2013, 12:23:48 UTC | debrujin integration, interface changed | 28 August 2013, 12:23:48 UTC |
12a2258 | fenderglass | 26 August 2013, 14:39:52 UTC | bugfix and skipping missing blocks, when constructing bg | 26 August 2013, 14:39:52 UTC |
22d1a57 | fenderglass | 24 August 2013, 09:31:41 UTC | overlap graph building and checking | 24 August 2013, 09:31:41 UTC |
3d0c999 | fenderglass | 23 August 2013, 15:37:07 UTC | more accurate test (not automatical yet) | 23 August 2013, 15:37:07 UTC |
7115fa6 | fenderglass | 23 August 2013, 14:23:10 UTC | debrujin refinment | 23 August 2013, 14:23:10 UTC |
c14b05b | fenderglass | 19 August 2013, 17:57:15 UTC | started with debrujin graph | 19 August 2013, 17:57:15 UTC |
b829fb9 | fenderglass | 16 August 2013, 18:56:48 UTC | visualization improved | 16 August 2013, 18:56:48 UTC |
f1721a2 | fenderglass | 16 August 2013, 13:05:50 UTC | added substitution case | 16 August 2013, 13:05:50 UTC |
14ea6f1 | fenderglass | 16 August 2013, 09:50:43 UTC | test improved | 16 August 2013, 09:50:43 UTC |
9ae75ee | fenderglass | 15 August 2013, 11:31:30 UTC | tests added | 15 August 2013, 11:31:30 UTC |
9189246 | fenderglass | 14 August 2013, 12:09:26 UTC | refactoring | 14 August 2013, 12:09:26 UTC |
e1c9a79 | fenderglass | 12 August 2013, 13:55:42 UTC | case with 6 vertexes added | 12 August 2013, 13:55:42 UTC |
560f1ca | fenderglass | 09 August 2013, 14:42:44 UTC | graph structure recognition for indel case | 09 August 2013, 14:42:44 UTC |
97623f1 | fenderglass | 09 August 2013, 12:01:10 UTC | distance estimation improved, conventional chromosome numbers | 09 August 2013, 12:01:10 UTC |
0a228b4 | fenderglass | 09 August 2013, 10:20:39 UTC | more refactoring | 09 August 2013, 10:20:39 UTC |
176afe9 | fenderglass | 08 August 2013, 12:24:48 UTC | more refactoring | 08 August 2013, 12:24:48 UTC |
70cd366 | fenderglass | 08 August 2013, 12:24:04 UTC | trash removed | 08 August 2013, 12:24:04 UTC |
fedd170 | fenderglass | 08 August 2013, 11:30:28 UTC | refactoring, repo reorganisation | 08 August 2013, 11:30:28 UTC |
0124ed0 | Snow San | 08 August 2013, 04:54:20 UTC | initial code for abyss graph | 08 August 2013, 04:54:20 UTC |
e34071f | fenderglass | 07 August 2013, 09:27:59 UTC | added test data | 07 August 2013, 09:27:59 UTC |
06697b6 | fenderglass | 06 August 2013, 13:00:27 UTC | estimation of distances between contigs | 06 August 2013, 13:00:27 UTC |
0ad2623 | fenderglass | 05 August 2013, 19:58:03 UTC | duplications removal | 05 August 2013, 19:58:03 UTC |
79abacb | fenderglass | 05 August 2013, 17:56:52 UTC | indel case | 05 August 2013, 17:56:52 UTC |
9563c3c | fenderglass | 05 August 2013, 09:46:47 UTC | fixed merging algorithm | 05 August 2013, 09:46:47 UTC |
0bcfd26 | fenderglass | 04 August 2013, 11:10:28 UTC | contigs orientation fixed | 04 August 2013, 11:10:28 UTC |
93ad178 | fenderglass | 03 August 2013, 10:52:27 UTC | initial commit | 03 August 2013, 10:52:27 UTC |