d648ad0 | Dan Durkin | 17 December 2012, 20:26:00 UTC | moved these views to a directory with a lower case - this work fine in run-app but fail when deployed as a war with the original upper case AddItemWizard dir. | 17 December 2012, 20:26:00 UTC |
f88bc3f | Jeri Levine | 19 November 2012, 16:58:52 UTC | Grammar tweaks | 19 November 2012, 16:58:52 UTC |
1b5e512 | dllahr | 15 November 2012, 16:01:35 UTC | remove old unused projects: bardqueryapi, elasticSearchPlugin, xmltojson | 15 November 2012, 16:01:35 UTC |
cdcd08f | dllahr | 13 November 2012, 18:07:58 UTC | repair broken application.properties file by reverting | 13 November 2012, 18:07:58 UTC |
c9c0e99 | gwalzer | 13 November 2012, 17:19:47 UTC | finish processing the four Burnham spreadsheets | 13 November 2012, 17:19:47 UTC |
d9ff5ce | gwalzer | 13 November 2012, 16:48:40 UTC | cleaning up some more spreadsheets | 13 November 2012, 16:48:40 UTC |
b9f3f38 | gwalzer | 06 November 2012, 21:17:37 UTC | Merge branch 'master' of github.com:broadinstitute/BARD | 06 November 2012, 21:17:37 UTC |
fbd6cd0 | gwalzer | 06 November 2012, 21:17:21 UTC | Finish parsing all the Broad assay successfully | 06 November 2012, 21:17:21 UTC |
b58d1d0 | gwalzer | 06 November 2012, 11:43:31 UTC | received spreadsheet updates from Josh | 06 November 2012, 11:43:31 UTC |
30faf41 | dllahr | 05 November 2012, 22:26:51 UTC | modify find link so that text says editing and cloning | 05 November 2012, 22:26:51 UTC |
ecc18a2 | Dan Durkin | 05 November 2012, 16:48:59 UTC | added back application.properties with svn dependency | 05 November 2012, 16:48:59 UTC |
38f7c62 | Dan Durkin | 05 November 2012, 16:37:29 UTC | updated BuildConfig to fall back to grailsCentral() - TODO, need to look at the code for resolving grailsCentral and update the artifactory config - grails-webflow didn't resolve properly when only hitting artifactory but did resolve properly with the grailsCentral() fallback | 05 November 2012, 16:37:29 UTC |
3c5dd89 | Yasel Cruz | 02 November 2012, 19:18:29 UTC | WIP. Added Add Item Wizard for cards in Assay edit mode. Functionality is a work in progress | 02 November 2012, 19:18:29 UTC |
21e7e70 | Yasel Cruz | 02 November 2012, 19:01:24 UTC | WIP. Added Add Item Wizard for cards in Assay edit mode. Functionality is a work in progress | 02 November 2012, 19:01:24 UTC |
b868106 | gwalzer | 02 November 2012, 18:51:29 UTC | adding support for ranges on numeric-value fields; cleaning up the spreadsheets | 02 November 2012, 18:51:29 UTC |
d541dbb | gwalzer | 31 October 2012, 19:32:49 UTC | switching to work on the new spreadsheet set from Josh | 31 October 2012, 19:32:49 UTC |
f947a1b | gwalzer | 30 October 2012, 13:04:03 UTC | Merge branch 'master' of github.com:broadinstitute/BARD | 30 October 2012, 13:04:03 UTC |
d2b6d2f | gwalzer | 30 October 2012, 13:03:45 UTC | adding the new spreadsheets from Josh - Broad assays | 30 October 2012, 13:03:45 UTC |
c2a5ef4 | Yasel Cruz | 29 October 2012, 20:45:39 UTC | wip | 29 October 2012, 20:45:39 UTC |
5962a5b | dllahr | 26 October 2012, 17:41:29 UTC | fix application.properties that I broke | 26 October 2012, 17:41:29 UTC |
9ef3a85 | dllahr | 26 October 2012, 17:33:51 UTC | Merge branch 'master' of github.com:broadinstitute/BARD Conflicts: BARD/application.properties | 26 October 2012, 17:33:51 UTC |
a69fe29 | Dan Durkin | 25 October 2012, 19:39:15 UTC | added back reference to svn to fix build TODO: track done this dependency and eliminate it | 25 October 2012, 19:39:15 UTC |
c645c90 | dllahr | 25 October 2012, 19:34:59 UTC | add back application.properties file - had to run grails upgrade again and it added this file | 25 October 2012, 19:34:59 UTC |
ca51deb | Dan Durkin | 25 October 2012, 19:24:18 UTC | adding back application.properties file | 25 October 2012, 19:24:18 UTC |
25b63af | Dan Durkin | 25 October 2012, 19:03:40 UTC | changed code for fixtures to dynamically name beans and use a for loop | 25 October 2012, 19:06:49 UTC |
3a59637 | Dan Durkin | 25 October 2012, 17:14:48 UTC | cleaned up some the the data setup | 25 October 2012, 19:06:49 UTC |
773c383 | Yasel Cruz | 25 October 2012, 18:01:06 UTC | WIP | 25 October 2012, 18:01:06 UTC |
9f8741f | Yasel Cruz | 25 October 2012, 16:27:00 UTC | New changes: Create View Assay Definition page. On view assay definition page change assay to assay definition, put ADID in title. Add edit button to View Assay Definition page. Change title of Edit page, add ADID to title, shorten title of 1st collapsible panel. Add save and cancel buttons to Edit Assay page. Add Add Item Wizard button to each card in Edit Assay Definition page. | 25 October 2012, 16:27:00 UTC |
b471dc7 | gwalzer | 25 October 2012, 14:25:22 UTC | adding another test-case to AssayServiceIntegrationSpec | 25 October 2012, 14:25:22 UTC |
f0ab7b3 | gwalzer | 25 October 2012, 14:03:42 UTC | Merge branch 'master' of github.com:broadinstitute/BARD into assayService_with_fixture | 25 October 2012, 14:03:42 UTC |
e484276 | gwalzer | 25 October 2012, 14:03:23 UTC | adding Fixture to the AssayServiceIntegrationSpec test | 25 October 2012, 14:03:23 UTC |
a8532d4 | dllahr | 24 October 2012, 19:53:56 UTC | fix indent in CbipCrowd section of Config.groovy | 24 October 2012, 19:53:56 UTC |
745357c | dllahr | 24 October 2012, 18:07:45 UTC | upgrade to grails 2.11 | 24 October 2012, 18:07:45 UTC |
ef2b901 | gwalzer | 24 October 2012, 17:25:30 UTC | Merge branch 'master' of github.com:broadinstitute/BARD | 24 October 2012, 17:25:30 UTC |
fc653a8 | gwalzer | 24 October 2012, 17:25:12 UTC | re-upgrading to grails 2.1.1 | 24 October 2012, 17:25:12 UTC |
5c9e51b | gwalzer | 24 October 2012, 16:43:24 UTC | Fixing the association problem between ExternalReference and Experiment | 24 October 2012, 16:43:24 UTC |
1fc5038 | Yasel Cruz | 23 October 2012, 16:51:20 UTC | Merge branch 'master' of https://github.com/broadinstitute/BARD | 23 October 2012, 16:51:20 UTC |
68909f8 | Yasel Cruz | 23 October 2012, 16:46:28 UTC | change to display field in select card | 23 October 2012, 16:46:28 UTC |
279bcba | gwalzer | 23 October 2012, 16:09:50 UTC | merging from master | 23 October 2012, 16:09:50 UTC |
f4d708d | gwalzer | 23 October 2012, 16:07:37 UTC | Ran all minAssayAnnotationSpreadsheets spreadsheets successfully | 23 October 2012, 16:07:37 UTC |
a3c7e4c | gwalzer | 23 October 2012, 15:04:48 UTC | updating the script | 23 October 2012, 15:04:48 UTC |
a1b3d61 | Dan Durkin | 22 October 2012, 21:02:11 UTC | Modified the repository config to not inherit repositories from plugins We want all artifacts cached in our artifactory server, if a plugin needs an artifact from a repo we currently do not proxy we should update our artifactory instance and add the proxy and work it into the resolution order in the right place. Along with these changes, I also tweaked the config of artifactory to try and eleminate situations were remote repos were timing out. | 22 October 2012, 21:02:11 UTC |
a1dd826 | Yasel Cruz | 22 October 2012, 15:54:24 UTC | fixed bug in move card (no dnd) | 22 October 2012, 15:54:24 UTC |
758fd83 | Yasel Cruz | 22 October 2012, 13:30:02 UTC | fixed conflicts. Up to date with grails 2.1.1 | 22 October 2012, 13:30:02 UTC |
8d10407 | Yasel Cruz | 22 October 2012, 12:51:34 UTC | Make some changes to card view such as menus for operations on cards and items. Also added alternative approach to using drag-drop between the cards | 22 October 2012, 12:51:34 UTC |
728a796 | gwalzer | 19 October 2012, 14:38:50 UTC | Merge branch 'master' of github.com:broadinstitute/BARD | 19 October 2012, 14:38:50 UTC |
6e3c7ae | gwalzer | 19 October 2012, 13:42:15 UTC | adding new mapping from Simon and receiving two new versions from Josh | 19 October 2012, 13:42:15 UTC |
5f5b1e4 | jerilevine | 18 October 2012, 18:21:03 UTC | PT37183767 PT37183741 Setting up Geb for CAP including Firefox and Chrome support | 18 October 2012, 18:21:03 UTC |
4c73668 | Jacob Asiedu | 17 October 2012, 00:27:26 UTC | Merge branch 'branch-for-grailsupgrade' | 17 October 2012, 00:27:26 UTC |
51690eb | Jacob Asiedu | 17 October 2012, 00:19:19 UTC | Fixing all broken tests | 17 October 2012, 00:19:19 UTC |
02f517b | Jacob Asiedu | 16 October 2012, 18:33:09 UTC | Merge branch 'branch-for-grailsupgrade' | 16 October 2012, 18:33:09 UTC |
e801a16 | Jacob Asiedu | 16 October 2012, 18:32:30 UTC | Upgrading CAP to grails 2.1.1 | 16 October 2012, 18:32:30 UTC |
873582a | Jacob Asiedu | 16 October 2012, 16:24:53 UTC | grails 2.1.1 | 16 October 2012, 16:24:53 UTC |
6b69db5 | Jacob Asiedu | 16 October 2012, 16:23:50 UTC | UPdating DataExport to use Grails 2.1.1 | 16 October 2012, 16:23:50 UTC |
fead39e | Jacob Asiedu | 16 October 2012, 16:07:50 UTC | Upgrade t0 2.1.1 | 16 October 2012, 16:07:50 UTC |
2fb15f9 | Jacob Asiedu | 16 October 2012, 16:07:26 UTC | Merge branch 'branch-for-grailsupgrade' | 16 October 2012, 16:07:26 UTC |
0a5b0e0 | Jacob Asiedu | 16 October 2012, 16:04:59 UTC | updating Domain model to grails.2.1.2=1 | 16 October 2012, 16:04:59 UTC |
84c91ae | jerilevine | 16 October 2012, 13:44:09 UTC | PT37714231 Adding support for Clover | 16 October 2012, 13:44:09 UTC |
fb7b88c | gwalzer | 11 October 2012, 16:50:11 UTC | initial version - tested for a adid not null; assayContext not null; including multiple modified items | 11 October 2012, 16:50:11 UTC |
5d68a05 | gwalzer | 10 October 2012, 20:31:29 UTC | still in progress | 10 October 2012, 20:31:29 UTC |
4967020 | gwalzer | 10 October 2012, 20:30:57 UTC | still in progress | 10 October 2012, 20:30:57 UTC |
27622ce | Jacob Asiedu | 09 October 2012, 18:51:57 UTC | Removing a file | 09 October 2012, 18:51:57 UTC |
0ae718b | gwalzer | 05 October 2012, 09:24:19 UTC | Adding reader wavelength concentration units | 05 October 2012, 09:24:19 UTC |
b1666f1 | Yasel Cruz | 03 October 2012, 19:54:25 UTC | Merge branch 'master' of https://github.com/broadinstitute/BARD | 03 October 2012, 19:54:25 UTC |
65beb99 | Yasel Cruz | 03 October 2012, 19:53:59 UTC | wip | 03 October 2012, 19:53:59 UTC |
1e2bc7b | Dan Durkin | 03 October 2012, 18:36:57 UTC | css tweak to scroll tables within cards if it would otherwise overflow | 03 October 2012, 18:36:57 UTC |
15c9b59 | Dan Durkin | 03 October 2012, 13:19:21 UTC | Merging in card css tweaks Merge branch 'iteration.010' | 03 October 2012, 13:19:21 UTC |
0ca6ca2 | Dan Durkin | 03 October 2012, 03:00:40 UTC | tweaks for css and card layout - switched to 2 cards per row - updated remove item and card to use icons - got the drophover for the card working | 03 October 2012, 03:00:40 UTC |
9828389 | Dan Durkin | 02 October 2012, 20:04:22 UTC | Merge branch 'iteration.010' | 02 October 2012, 20:04:22 UTC |
2c03efa | Dan Durkin | 02 October 2012, 20:03:12 UTC | forgot to update integration test with modified constraint for AssayContext.contextName | 02 October 2012, 20:03:12 UTC |
ec1010f | Dan Durkin | 02 October 2012, 18:55:08 UTC | fixes for drag and drop as well as editing card titles Merge branch 'iteration.010' Conflicts: BARD/grails-app/views/layouts/basic.gsp | 02 October 2012, 18:55:08 UTC |
b9a1f31 | Dan Durkin | 02 October 2012, 18:48:56 UTC | Added ability to highlight rows in card - https://www.pivotaltracker.com/projects/506277#!/stories/37030321 - change from the tr / row being draggable to the td for the attribute label being draggable - this has the side effect of making the attribute value selecetable | 02 October 2012, 18:48:56 UTC |
569e5ef | Dan Durkin | 02 October 2012, 18:22:43 UTC | addtional work for allowing user to specified names for cards -- https://www.pivotaltracker.com/projects/506277#!/stories/37030787 - added double click to card titles and reworked the add card form to also work for edit card, added new controller and service methods | 02 October 2012, 18:26:03 UTC |
e107139 | Dan Durkin | 02 October 2012, 16:34:54 UTC | partial fix for Added some logic to allow display user specified names for cards https://www.pivotaltracker.com/projects/506277#!/stories/37030787 - added some logic to display user set cardname | 02 October 2012, 18:26:03 UTC |
cf19ffc | jerilevine | 02 October 2012, 17:32:58 UTC | PT37025201 Fixing link for BARD Web Query Home to take user to the home page for the Web Query UI | 02 October 2012, 17:32:58 UTC |
444e012 | jerilevine | 02 October 2012, 17:26:37 UTC | PT37025201 Fixing link for BARD Web Query Home to take user to the home page for the Web Query UI | 02 October 2012, 17:26:37 UTC |
f1beac9 | Dan Durkin | 02 October 2012, 03:56:50 UTC | added code to eliminate nulls if no preferred descriptor can be found for an element | 02 October 2012, 03:56:50 UTC |
97f4845 | Dan Durkin | 02 October 2012, 02:36:51 UTC | added some additional logic for picking sections for card grouping there was at least one assay 3989 that had a card with and item that resulted in descriptor path with a length less than 2. So added some logic to take the min of path.size() or 2 | 02 October 2012, 02:36:51 UTC |
91f87d8 | Dan Durkin | 02 October 2012, 01:44:04 UTC | Added fix to CardService for sublist and styling for panel assay also adjusted the load-data routine to load all assay with no results | 02 October 2012, 01:44:04 UTC |
52d45c8 | Dan Durkin | 02 October 2012, 00:11:44 UTC | fix for PT506277, lookup ADID 3564 in CAP causes exception https://www.pivotaltracker.com/projects/506277 update gsp to agree with changes that occurred in domain model | 02 October 2012, 00:11:44 UTC |
d1f2cba | Dan Durkin | 01 October 2012, 20:51:46 UTC | teaked the headings a bit to make them smaller | 01 October 2012, 20:51:46 UTC |
9154fbd | Dan Durkin | 01 October 2012, 20:27:34 UTC | moved logging.properties to src/groovy | 01 October 2012, 20:27:34 UTC |
78cf9ee | Dan Durkin | 01 October 2012, 20:14:38 UTC | had file in wrong dir, moved it to WEB-INF/classes | 01 October 2012, 20:14:38 UTC |
b82ff8a | Dan Durkin | 01 October 2012, 19:51:15 UTC | adding this logging file back it must have been deleted | 01 October 2012, 19:51:15 UTC |
0a7ba95 | Dan Durkin | 01 October 2012, 18:05:51 UTC | fixes for broken tests | 01 October 2012, 18:05:51 UTC |
351c6ac | Dan Durkin | 01 October 2012, 16:47:46 UTC | some tweaks to the css to add background color to card sections | 01 October 2012, 16:47:46 UTC |
7679e81 | Dan Durkin | 01 October 2012, 14:18:28 UTC | removed alert displaying card primary key before delete | 01 October 2012, 14:18:28 UTC |
f2cf7ef | Yasel Cruz | 28 September 2012, 19:58:44 UTC | Merge branch 'master' of https://github.com/broadinstitute/BARD | 28 September 2012, 19:58:44 UTC |
c83dbbf | Yasel Cruz | 28 September 2012, 19:55:14 UTC | Fix delete empty card that got broken when sections where added to cards in assay view. Fix basic assay registration form. | 28 September 2012, 19:55:14 UTC |
11251cd | Dan Durkin | 28 September 2012, 18:16:12 UTC | added an initial sort on assayContext.id to make card order slightly more stable | 28 September 2012, 18:16:12 UTC |
bbdf338 | dllahr | 28 September 2012, 16:21:49 UTC | changed log message level to error when missing attribute found | 28 September 2012, 16:26:05 UTC |
a6429b1 | dllahr | 28 September 2012, 15:31:51 UTC | Merge branch 'master' of github.com:broadinstitute/BARD Conflicts: DnaRepairSpreadsheetParser/scripts/ParseSpreadsheet.groovy | 28 September 2012, 15:31:51 UTC |
e0c8637 | dllahr | 28 September 2012, 15:25:55 UTC | add recording of times to log file | 28 September 2012, 15:25:55 UTC |
019f029 | gwalzer | 28 September 2012, 15:22:02 UTC | adding a column header 'assay component role' for all the spreadsheet for cell 2/G | 28 September 2012, 15:22:02 UTC |
5fcf517 | Yasel Cruz | 28 September 2012, 14:22:56 UTC | Merge branch 'master' of https://github.com/broadinstitute/BARD | 28 September 2012, 14:22:56 UTC |
629dbcb | Yasel Cruz | 28 September 2012, 14:20:15 UTC | WIP | 28 September 2012, 14:20:15 UTC |
8b75a07 | gwalzer | 28 September 2012, 06:03:40 UTC | cleaning up the spreadsheets a little to try and help the parsing process | 28 September 2012, 06:03:40 UTC |
786aa4d | gwalzer | 28 September 2012, 04:36:10 UTC | do not save attributes with empty key/value values | 28 September 2012, 04:36:10 UTC |
5061441 | gwalzer | 28 September 2012, 03:02:22 UTC | Merge branch 'master' of github.com:broadinstitute/BARD | 28 September 2012, 03:02:22 UTC |
6298226 | gwalzer | 28 September 2012, 03:01:27 UTC | Concatenating concentration-units abbreviation to displayValue if the value is a concentration | 28 September 2012, 03:01:27 UTC |