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03c2536 Junqi Yin 14 August 2017, 17:46:57 UTC Add -finit-local-zero flag on Melvin 14 August 2017, 17:46:57 UTC
fe2ad56 Gautam Bisht 26 April 2017, 23:30:25 UTC Fixes land BGC computation for threads more than one When nthreads > 1, the size of local variable (e.g. temp_sminp_to_plant) is not equal to the global variable (e.g. phosphorusflux_vars%sminp_to_plant_col). 14 August 2017, 17:31:16 UTC
081d82a noel 14 August 2017, 17:17:35 UTC Merge branch ACME-Climate/ndk/machinefiles/intel18-option-nersc (PR #1710) Update modules for Cori after maintenance AND add intel18 option for Cori and Edison 14 August 2017, 17:17:35 UTC
ae3333a Michael Deakin 11 August 2017, 20:39:41 UTC Merge branch 'mt5555/cime/skybridge3' --npernode was set to the number of cores per node, independent of the number of threads used, resulting in oversubscribed nodes. Updated skybridge environment now rejects these jobs (and we shouldn't run this way anyway). Also: remove duplicate sbatch setting (so this is only set in one place) added support for Intel Broadwell machine 'ghost' removed support for decomissioned redsky [BFB] 11 August 2017, 20:39:41 UTC
07c1b1c noel 11 August 2017, 15:13:19 UTC After Cori maintenance in August 2017, some modules needed to be updated. Update craype, cray-mpich, pmi for cori-knl and cori-haswell. With cori-knl there are some apparent module bugs that I am working around to allow for the intel18 option. 11 August 2017, 15:13:19 UTC
c1a7712 Junqi Yin 10 August 2017, 20:49:35 UTC Merge branch 'bishtgautam/lnd/20tr-cn-test' (PR #1677) Adds a land test for 20th century transient A test with active land BGC for the 20th-century transient is added. This test will ensure the dynamic PFT capability in ALM will be protected. [BFB] 10 August 2017, 20:49:35 UTC
3778b5b Azamat Mametjanov 09 August 2017, 23:32:20 UTC Merge branch 'worleyph/cime/add_NaNcheck_to_reprosum' (PR #1703) Check for NaNs and INFs in input to shr_reprosum_calc: In recent development NaNs and INFs are often first identified when passed to the shr_reprosum_calc routine, where they either lead to segmentation faults or to very slow performance (due to the interaction of NaNs and INFs with the reproducible sum logic). To more readily identify this error condition (and to prevent false attributions of error to shr_reprosum_calc), the input array is checked for the presence of NaNs and INFs. If found, an appropriate error message is output and the job is terminated. [BFB] 09 August 2017, 23:32:20 UTC
7580b6c Mark Taylor 09 August 2017, 23:22:22 UTC replacing --npernode with mapping arguments copied from Anvil [BFB] 09 August 2017, 23:22:22 UTC
07c01d1 Mark Taylor 09 August 2017, 21:59:01 UTC bug fix: needed spaces {{ }} CIME syntax 09 August 2017, 21:59:01 UTC
f8b3ead Mark Taylor 09 August 2017, 19:07:30 UTC fix incorrect settings for --npernode on skybridge --npernode was set to the number of cores per node, independent of the number of threads used, resulting in oversubscribed nodes. Updated skybridge environment now rejects these jobs (and we shouldn't run this way anyway). Also: remove duplicate sbatch setting (so this is only set in one place) added support for Intel Broadwell machine 'ghost' removed support for decomissioned redsky [BFB] 09 August 2017, 19:07:30 UTC
e576bde Wuyin Lin 09 August 2017, 18:25:32 UTC Merge quantheory/atm/in_cloud_precip_gt_cld_frac (PR #1642) Add a limiter that requires the precipitation fraction calculated by MG2's 'in_cloud' method to be at least as great as the cloud fraction. As currently written, MG2 assumes that the fraction of a level containing cloud is a subset of the fraction of a level containing precipitation. Therefore we should require the precipitation fraction to be greater than or equal to the current cloud fraction for consistency. While the previous behavior should be considered a bug, the effect of this change is expected to be negligible for several reasons: The inconsistent state (in this case, precip_frac < cldm) is only possible if there is a significant cloud fraction in a level that has negligible cloud mass. Depending on the model configuration, this might be either rare or impossible. (In the latter case, this change is bit-for-bit.) Even if the precipitation fraction does drop below the cloud fraction, the two values will likely be similar. Processes that involve interactions between precipitation and clouds will be shut off if there is no cloud mass. The code controlling evaporation/sublimation code, while it does use both the precipitation and cloud fractions, contains a limiter that causes it to ignore the cloud fraction when the cloud mass is small. [non-BFB] 09 August 2017, 18:25:32 UTC
d985681 noel 09 August 2017, 17:38:57 UTC For all NERSC mmachines, add a `--compiler=intel18` option and continue making the machine settings more consistent. 09 August 2017, 17:38:57 UTC
ee8bef2 Gautam Bisht 09 August 2017, 15:41:41 UTC Merge branch 'jinyuntang/lnd/betr_v2int' (PR #1618) This replaces betr-v1 with the more modularized betr-v2. The code run successfully with gnu compiler on edison, however, it requires intel 'compiler 16.x to run and 15.x can only run in the debug model. This replacement does not affect other parts of ALM other than betr. [BFB] 09 August 2017, 15:41:41 UTC
21ca187 Robert Jacob 08 August 2017, 19:44:10 UTC Merge branch 'brhillman/atm/add-ena-rrm' (PR #1269) Add configuration for a new regionally-refined (ne30 to ne120) grid over the Eastern North Atlantic. All components run on the RRM grid (enax4v1). All needed input files to run the new configuration have been uploaded to the input data repository. Supported compsets include only FC5AV1C-04P2 (72 levels), but RTM needs to be turned off (xmlchange RTM_MODE=NULL). Fixes ACME-Climate/ACME#1357 * brhillman/atm/add-ena-rrm: Set ATM_NCPL for ENA grid Set CAM_DYCORE to se for RRM grids Set CLM namelist definitions and defaults for ENA Set CAM namelist defaults for ENA grid Add ENA grid size to CAM configuration Add cime configuration for ENA grid 08 August 2017, 19:44:10 UTC
74bb8d9 Junqi Yin 08 August 2017, 18:51:41 UTC Merge branch 'bishtgautam/lnd/20tr-eca-compsets' (PR #1674) Adds 20th century transient I-Compsets for ECA Four 20th century transient compsets are added for the ECA model. Additionally, the land namelist build script is modified so that existing land initial conditions, which are valid for non-ECA case, aren't used when ECA is on. [NML] 08 August 2017, 18:51:41 UTC
f21ef4f Jinyun Tang 08 August 2017, 17:31:29 UTC bug fix for ibm and pgi compiler Now betr no longer reads in namelist from string, which seems to fix the failure from ibm and pgi comiplers. No changes to ALM are involved. 08 August 2017, 17:31:29 UTC
b537324 Patrick Worley 07 August 2017, 23:14:08 UTC Fix mistyping of variables New logical variables nan_check and inf_check were mistakenly declared as integer. 07 August 2017, 23:14:08 UTC
6725a21 Jon Wolfe 07 August 2017, 19:27:29 UTC Merge branch 'jonbob/mpas/update-070617' (PR #1630) Update MPAS components and framework, bring in threading optimizations This PR updates all MPAS submodules and framework, including: * bfb framework threading optimization from Abhinov MPAS#1237; * bfb mpas-o threading optimization from Abhinov MPAS#1235; * update path to new Albany install (cherry-picked from branch agsalin/machines/AlbanyNewInstall); * various framework and component updates. Tested with: * PET_Ln9.T62_oEC60to30v3.GMPAS-NYF.edison_intel * SMS.T62_oEC60to30v3.GMPAS-IAF.edison_intel (bfb with current master) * PET.T62_oEC60to30v3.GMPAS-NYF.titan Note: this commit is answer-changing only for compsets with MPASLI [non-BFB] 07 August 2017, 19:27:29 UTC
f1f45ca Gautam Bisht 07 August 2017, 15:26:11 UTC Minor updates to the CLMbuildNamelist Adds back compatability when XML entry for initial condition did not include an identifier for nutrient competition pathway. All existing initial condition XML entries now include a new identifier (nu_com = 'RD'). If nu_com is undefined (=""), the model configuration is using SP (satellite phenology). In order to use existing initial condition nu_com = RD (instead of nu_comp='') is used to indentify the appropriate initial condition. 07 August 2017, 15:26:11 UTC
4ac2ee7 Patrick Worley 06 August 2017, 21:12:48 UTC Check for NaNs and INFs in input to shr_reprosum_calc In recent development NaNs and INFs are often first identified when passed to the shr_reprosum_calc routine, where they either lead to segmentation faults or to very slow performance (due to the interaction of NaNs and INFs with the reproducible sum logic). To more readily identify this error condition (and to prevent false attributions of error to shr_reprosum_calc), the input array is checked for the presence of NaNs and INFs. If found, an appropriate error message is output and the job is terminated. [BFB] *********1*********2*********3*********4*********5*********6*********7** Longer commit message body describing the commit. Can contain lists as follows: * Item 1 * Item 2 * Item 3 A good commit message should be written like an email, a subject followed by a blank line, followed by a more descriptive body. Can also contain a tag at the bottom describing what type of commit this is. [BFB] - Bit-For-Bit [FCC] - Flag Climate Changing [Non-BFB] - Non Bit-For-Bit [CC] - Climate Changing [NML] - Namelist Changing See confluence for a more detailed description about these tags. 06 August 2017, 21:12:48 UTC
0af35b6 Mark Taylor 04 August 2017, 19:22:33 UTC Merge mt5555/homme/skybridge to master (PR #1701) tweaks for standalone HOMME to compile on upgraded skybridge [BFB] 04 August 2017, 19:22:33 UTC
c9373a1 Mark Taylor 04 August 2017, 19:09:19 UTC tweaks for standalone HOMME to compile on upgraded skybridge [BFB] 04 August 2017, 19:09:19 UTC
12e16e3 Jayesh Krishna 04 August 2017, 16:02:19 UTC Merge branch 'jayeshkrishna/blues_add_nag_pgi' (PR #1699) Adding support for pgi 15.7 and nag 6.0 on blues. [BFB] 04 August 2017, 16:02:19 UTC
e1c6cdc Jayesh Krishna 03 August 2017, 22:12:16 UTC Adding support for NAG compiler on blues Adding support for nag compiler (nag 6.0) on blues. * The -std=c99 flag is required because kissvec.c uses the "restrict" attribute that is part of C99 (The C compiler is gcc) * Only "mpich" is currently supported with the nag compiler on blues [BFB] 03 August 2017, 22:12:16 UTC
e43157e Jayesh Krishna 03 August 2017, 21:15:31 UTC Adding support for pgi compiler on blues Adding support for pgi compiler (pgi 15.7) on blues. [BFB] 03 August 2017, 21:15:31 UTC
02a7f60 Robert Jacob 03 August 2017, 16:28:01 UTC Merge branch 'azamat/mem-usage/swap-highwater' (PR #1639) Correct parsing of mem highwater values from cpl.log. Previously, memory resident set size was getting parsed while checking for memleaks. [BFB] Fixes ACME-Climate/ACME#1636 03 August 2017, 16:28:01 UTC
8af3502 Jinyun Tang 03 August 2017, 05:33:28 UTC change calling method of endrun in betr Now msg is defined before calling endrun in order to avoid building failure with pgi compiler. No changes of ALM are involved. 03 August 2017, 05:33:28 UTC
62d6582 Jinyun Tang 02 August 2017, 23:51:51 UTC change the namelist reader for betr Now namelist of betr is read per processor rather than per column. This is an attempt to fix the runtime failure with ibm compiler. No change to ALM is involved. 02 August 2017, 23:51:51 UTC
09daa64 Jayesh Krishna 01 August 2017, 22:12:17 UTC Re-organizing modules for blues Moving common modules (python, cmake) to a generic modules block 01 August 2017, 22:12:17 UTC
251cbc7 Jayesh Krishna 01 August 2017, 21:44:12 UTC Merge branch 'lcrc/machines/bebop' (PR #1662) Adding support for ANL Bebop cluster. (Re-merge of the branch was required because the previous merge missed a commit - 8aad11eea0e450eceb354ef509aa1b048e43668d ) [BFB] 01 August 2017, 21:44:12 UTC
7436dfd Jayesh Krishna 01 August 2017, 21:30:11 UTC Merge branch 'lcrc/machines/bebop' (PR #1662) Adding support for ANL Bebop cluster. [BFB] Conflicts: cime/config/acme/machines/config_batch.xml 01 August 2017, 21:30:11 UTC
5396292 Jinyun Tang 01 August 2017, 19:52:43 UTC bug fix for skybridge failures Now ep_betr is always allocated to avoid runtime failure complaining ep_betr is not associated with a target. 01 August 2017, 19:52:43 UTC
a6d7316 James Foucar 01 August 2017, 19:14:47 UTC Merge branch 'jgfouca/cime/fix_st_archive_template' into master (PR #1692) Fix st_archive template. Not sure how we didn't catch this before. The st_archive was using an outdated way of handling the command line arguments. Fixes #1691 [BFB] * jgfouca/cime/fix_st_archive_template: Fix st_archive template. 01 August 2017, 19:15:25 UTC
bcff498 James Foucar 01 August 2017, 19:12:08 UTC Fix st_archive template. Not sure how we didn't catch this before. [BFB] 01 August 2017, 19:12:08 UTC
616802a Jon Wolfe 01 August 2017, 18:36:31 UTC Merge branch 'jonbob/cime/fix-cplalbav-setting' (PR #1652) Fix CPL_ALBAV setting for DATM/MPASO configurations. This PR fixes the setting for CPL_ALBAV for configurations with DATM and MPASO. It was incorrectly set in CIME5 development. It will change answers for C and G cases. However, 10-year tests of -compset GMPAS-IAF -mach anvil -res T62_oEC60to30v3 with this variable true and false show the effect is not climate-changing. [non-BFB] 01 August 2017, 18:36:31 UTC
bbe604b Junqi Yin 01 August 2017, 16:29:46 UTC Merge branch 'bishtgautam/lnd/fix-namelist-build' (PR #1669) Updates ALM build script for BGC relatved variables Values for suplnitro and suplphos from the user defined namelist are used during the generation of land namelist file. Adds few more consistency checks. Removes error checking for CTC and CNT soil bgc models. The error checking needs to be implemented in setup_cmdl_bgc(), which will be updated in the future. Fixes #1565 [BFB] 01 August 2017, 16:29:46 UTC
70626e9 Azamat Mametjanov 01 August 2017, 15:39:25 UTC Merge branch 'alcf/machines/theta' (PR #1689) Update ALCF Theta machine config [BFB] 01 August 2017, 15:39:25 UTC
a6a42ba Azamat Mametjanov 01 August 2017, 15:16:46 UTC Merge branch 'azamat/homme/fix-io-init' (PR #1684) Initialize HOMME netcdf file open var: netcdf_io_mod::nf_open_file routine does not initialize ncFileID, which is used by other routines to drive MPI calls. All IO tasks should have a non-negative value for ncFileID (e.g. masterproc has ncFileID=0) to avoid hangs. This PR sets it to 0 for all tasks that call nf_open_file. Also, this PR updates Mira/Cetus machine config: * link to correct HDF5 and Zlib libraries * use pre-installed cprnc, instead of building a new one * suppress nested-omp compiler warnings. [BFB] Fixes #1683 01 August 2017, 15:16:46 UTC
8aad11e Azamat Mametjanov 31 July 2017, 21:59:41 UTC Move Bebop baselines to a subdirectory 31 July 2017, 21:59:41 UTC
c249fdf Gautam Bisht 31 July 2017, 21:17:40 UTC Adds I-Compsets for 20th-century with RTM Adds following four compsets: - I20TRCNECACTCBC : Carbon-Nitrogen with Century soil BGC + RTM - I20TRCNECACNTBC : Carbon-Nitrogen with CTC soil BGC + RTM - I20TRCNPECACTCBC : Carbon-Nitrogen-Phosphorus with Century soil BGC + RTM - I20TRCNPECACNTBC : Carbon-Nitrogen-Phosphorus with CTC soil BGC + RTM 31 July 2017, 21:17:40 UTC
349a0de Azamat Mametjanov 31 July 2017, 20:45:46 UTC Update batch settings 31 July 2017, 20:45:46 UTC
a4f3eff Azamat Mametjanov 31 July 2017, 19:52:00 UTC Merge branch 'alcf/mira/pes-f-compset' (PR #1688) Update PEs for ne120 F-compset cases on Mira [BFB] 31 July 2017, 19:52:00 UTC
f4890bc Azamat Mametjanov 31 July 2017, 19:40:35 UTC Update PEs for ne120 F-compset cases on Mira 31 July 2017, 19:40:35 UTC
aa740da Azamat Mametjanov 31 July 2017, 18:11:34 UTC Update default project on Theta 31 July 2017, 18:11:34 UTC
c9b1e61 Matthew Hoffman 31 July 2017, 17:33:11 UTC Update MPASLI to fix bit reproducibility The previous update of MPASLI in this branch brought in changes that were not BFB for the configuration used in ACME. In fixing that bug, I also discovered that the configuration in ACME was not bit-reproducible. So this update also fixes that bug. However, that fix makes this update answer-changing. Differences are small, and the new results are identical across different processor counts. I also update the namelist option to force the Albany mesh to be rebuilt on every time step. This is needed to allow Albany runs to be BFB-restartable until a fix in Albany is brought into ACME. [Non-BFB] 31 July 2017, 17:39:39 UTC
436d07c Azamat Mametjanov 29 July 2017, 22:25:58 UTC Resolve paths from $PROJECT 29 July 2017, 22:25:58 UTC
74f9135 Azamat Mametjanov 29 July 2017, 18:30:15 UTC Update Theta machine config 29 July 2017, 18:30:15 UTC
9d6361f Gautam Bisht 29 July 2017, 06:38:07 UTC Fixes setup of land namelist for soil BGC Removes error checking for CTC and CNT soil bgc models. The error checking needs to be implemented in setup_cmdl_bgc(), which will be updated in the future. 29 July 2017, 06:38:07 UTC
1855bcb Azamat Mametjanov 28 July 2017, 21:16:50 UTC Perl module is not installed, use a local one 28 July 2017, 21:16:50 UTC
d13eadf Azamat Mametjanov 28 July 2017, 20:34:31 UTC Fix module cmd when called from python 28 July 2017, 20:34:31 UTC
44201fe Jinyun Tang 28 July 2017, 20:10:23 UTC bug fix for ibm compiler Add a logical switch to workaround the failure of creating the betr_parameter namelist on the fly. No change to ALM is made. 28 July 2017, 20:10:23 UTC
bd5ddeb noel 28 July 2017, 00:47:05 UTC Merge branch ACME-Climate/PeterCaldwell/cime/add-edison-Fcompset-PElayout (PR #1637) Default PE layout for F-compsets on Edison 28 July 2017, 00:47:05 UTC
26276c6 Azamat Mametjanov 28 July 2017, 00:14:04 UTC Suppress nested-omp IBM compiler warnings 28 July 2017, 00:14:04 UTC
d90038f Azamat Mametjanov 28 July 2017, 00:11:46 UTC Init HOMME internal netcdf control-var Also update Mira/Cetus machine config: * link to correct HDF5 and Zlib * use pre-installed cprnc * suppress nested-omp compiler warnings 28 July 2017, 00:11:46 UTC
a4aa68e Michael Deakin 27 July 2017, 23:27:22 UTC Merge branch 'mfdeakin-sandia/run_acme/submission_cleanup' 27 July 2017, 23:27:22 UTC
5a6abd0 Michael Deakin 27 July 2017, 20:54:31 UTC Minor cleanups for the run_acme submission code 27 July 2017, 22:57:32 UTC
bcaa479 Jinyun Tang 27 July 2017, 22:43:20 UTC update sbetr with bug fixes Now sbetr standalone tests passed. No change to ALM is involved. 27 July 2017, 22:43:20 UTC
1efdd70 Wade Burgess 27 July 2017, 22:12:37 UTC Merge branch 'pwburge/cime/chama-WCID-change' into master (PR #1682) Updated WCID for chama Updated the config_machines.xml file to edit chama's tag, which is the WCID for ACME on chama. [BFB] 27 July 2017, 22:16:10 UTC
3964231 noel 27 July 2017, 22:12:05 UTC Merge branch ACME-Climate/ndk/machinefiles/edison-2017-update-hotfix (PR #1679) Update to support edison after OS/software upgrades 27 July 2017, 22:12:05 UTC
dd4151b Wade Burgess 27 July 2017, 21:00:42 UTC Updated WCID for chama Updated the config_machines.xml file to edit chama's <PROJECT> tag, which is the WCID for ACME on chama. [BFB] 27 July 2017, 21:00:42 UTC
0574899 noel 27 July 2017, 20:24:42 UTC Remove comment. 27 July 2017, 20:24:42 UTC
1c26e7a noel 27 July 2017, 20:18:52 UTC Minor cleanup. After removing that flag, can now simplify and inherit those flags from the Intel stanza above. 27 July 2017, 20:18:52 UTC
91b0cac noel 27 July 2017, 20:13:13 UTC Correcting a mistake in my last commit -- I meant to remove the -qno-opt-dynamic-align flag from the DEBUG build. We want it for optimized builds, but shouldn't need it for DEBUG. 27 July 2017, 20:13:13 UTC
446fbf1 noel 27 July 2017, 19:58:23 UTC Changes after review. Remove the -lm flag as Intel compiler recommends. Further simplification in config_compilers as we use what is defined with CNL. Prefer shell commands over using python. 27 July 2017, 19:58:23 UTC
d731a1d noel 27 July 2017, 08:31:08 UTC remove vestige of intel17 compiler option for edison 27 July 2017, 08:31:08 UTC
99eacd5 noel 27 July 2017, 07:36:47 UTC Add in --cpu_bind for srun on edison after the update 27 July 2017, 07:36:47 UTC
96a005a noel 27 July 2017, 04:42:24 UTC Update to use latest OS/software on edison. 27 July 2017, 04:42:24 UTC
fc09b5d James Foucar 27 July 2017, 00:04:51 UTC Merge branch 'jgfouca/cime/update_skybridge_to_toss3' into master (PR #1678) Update skybridge to TOSS3 [BFB] * jgfouca/cime/update_skybridge_to_toss3: Update skybridge to TOSS3 27 July 2017, 00:05:23 UTC
faf1d19 James Foucar 27 July 2017, 00:00:44 UTC Update skybridge to TOSS3 [BFB] 27 July 2017, 00:00:44 UTC
2c1035f noel 26 July 2017, 22:30:00 UTC Merge branch ACME-Climate/ndk/machinefiles/haswell_cpu_bind_cores (PR #1672) For cori-haswell only, enable flag to bind tasks to cores. 26 July 2017, 22:30:00 UTC
c4048fe Michael Deakin 26 July 2017, 20:34:07 UTC Implements support to run_acme for anvil's priority queue 26 July 2017, 20:34:07 UTC
19af428 Gautam Bisht 26 July 2017, 19:53:59 UTC Adds a land test for 20th century transient A test with active land BGC for the 20th century transient is added. This test will ensure the dynamic PFT capability in ALM will be protected. 26 July 2017, 19:53:59 UTC
2327f7c Aaron Donahue 26 July 2017, 18:29:08 UTC Merge branch 'aarondonahue/cime/llnl_lc_machines' 26 July 2017, 18:29:08 UTC
0f9f7f8 Gautam Bisht 26 July 2017, 16:59:19 UTC Minor updates to the land namelist build script Initial condition for the land model is now determined using an additional variable (nu_com). This change allows current land initial for BGC mode to be used only when ECA model is not activated. 26 July 2017, 16:59:19 UTC
c9e2493 Sean Patrick Santos 26 July 2017, 16:58:49 UTC Add comment explaining 'in_cloud' method. Explain the 'in_cloud' method briefly, and why a "max" is needed. 26 July 2017, 16:58:49 UTC
d8abdfa Gautam Bisht 26 July 2017, 16:33:02 UTC Modifies land initial condition for ECA Existing land initial conditions are not valid when land BGC uses the ECA model. Thus, modification are made such that existing land initial conditions are only used when ECA model is not used (i.e. nu_com = RD). 26 July 2017, 16:51:22 UTC
5666ba3 Aaron Donahue 26 July 2017, 15:56:57 UTC Cleaned up compiler file Sloppy coding led to a NETCDF_PATH line that was outside of the <compiler> entry for quartz. Cleaned up sloppy code. [BFB] - Bit-For-Bit 26 July 2017, 15:56:57 UTC
4f65b14 Gautam Bisht 26 July 2017, 15:54:07 UTC Adds I-Compsets for ECA Following I-Compsets for the ECA model are added: - IM20TRCNECACNTBC : Carbon-Nitrogen with Century soil BGC - IM20TRCNECACTCBC : Carbon-Nitrogen with CTC soil BGC - IM20TRCNPECACNTBC : Carbon-Nitrogen-Phosphorus with Century soil BGC - IM20TRCNPECACTCBC : Carbon-Nitrogen-Phosphorus with CTC soil BGC 26 July 2017, 15:54:07 UTC
54a1476 noel 26 July 2017, 05:10:40 UTC For cori-haswell only, enable flag to bind tasks to cores. Uncomment line to add --cpu_bind=cores to srun command. This will automatically generate masks binding tasks to cores 26 July 2017, 05:10:40 UTC
3ca35d6 noel 26 July 2017, 00:55:08 UTC Merge branch ACME-Climate/ndk/machinefiles/module-edits-for-mpi-serial-nersc2 (PR #1650) Improve mpi-serial support on NERSC machines (edison,cori). 26 July 2017, 00:55:08 UTC
2702399 Jinyun Tang 26 July 2017, 00:23:49 UTC change intent specifications for betr reaction interface No change to ALM is made. 26 July 2017, 00:23:49 UTC
ecb7d7b Jinyun Tang 25 July 2017, 22:23:45 UTC replace some function with subroutines in sbetr This fixes the buidling bug with ibm compiler. Now change in alm is involved. 25 July 2017, 22:23:45 UTC
36a277c Michael Deakin 25 July 2017, 19:03:32 UTC Move anvil priority stuff to it's own section 25 July 2017, 21:47:07 UTC
1845a38 Jinyun Tang 25 July 2017, 18:57:45 UTC change array declaration in base bgcreactiontype of betr This is a fix to enable the building with the ibm compiler. No change of ALM is involved, so no answer change is expected. BFB. 25 July 2017, 18:57:45 UTC
8e448a0 Michael Deakin 24 July 2017, 20:51:02 UTC Implements support for anvils priority queue Moves making machine lowercase up to remove lowercase calls 24 July 2017, 20:51:02 UTC
7eaf83b Azamat Mametjanov 24 July 2017, 19:39:30 UTC HOMME CMake file and static cprnc 24 July 2017, 19:39:30 UTC
e9417a4 Azamat Mametjanov 24 July 2017, 16:56:30 UTC Distinguish bebop node names in acme_dev tests 24 July 2017, 16:56:30 UTC
8dac1e7 Balwinder 24 July 2017, 16:37:37 UTC Merge branch 'jqyin/cime/shorten-sms-test' (PR #1661) Shorten SMS.hcru_hcru.I1850CRUCLM45CN test Shorten SMS.hcru_hcru.I1850CRUCLM45CN test to run for 1 day. This reduces the run time to under 10 minutes on supported machines. Fixes #1648 [BFB] * jqyin/cime/shorten-sms-test: Shorten SMS.hcru_hcru.I1850CRUCLM45CN test to run for 1 day 24 July 2017, 16:37:37 UTC
f6afef0 Jinyun Tang 24 July 2017, 16:23:07 UTC simplify the col pft lun interface in betr Now "use columntype" and alike in the betr interface is called before the subrotuines are defined. This will allow using macros to ensure compatibility with the standalone use. No answer change is involved with alm. 24 July 2017, 16:29:07 UTC
c67dc45 Jinyun Tang 22 July 2017, 17:31:30 UTC bug fix to N mass budget The nitrogen buffer pool was added to back to make sure the test SMS_Ly2_P1x1.1x1_smallvilleIA.ICLM45CNCROP is bfb. The test was run on cori haswell 22 July 2017, 17:31:30 UTC
6dc935a noel 22 July 2017, 00:12:06 UTC Uncomment the module remove of serial hdf5 for cori-knl (back to original) 22 July 2017, 00:12:06 UTC
f9a789c Azamat Mametjanov 21 July 2017, 23:57:09 UTC Merge branch 'oksanaguba/homme/fix1609-and-ibm' (PR #1612) Provides a fix for a land IC file and a minor fix for an IBM compiler. PR #1581 changed how area of columns is computed for RRM atmospheric meshes. For an existing compset for 2000 year land IC file was remapped, but 1850 year the IC file was not remapped (issue 1609). This PR removes the 1850 land file from the setup. This PR also fixes a minor print statement issue with an IBM compiler from a commit in PR #1581. Fixes #1609 [BFB] 21 July 2017, 23:57:09 UTC
d6a2fa3 Junqi Yin 21 July 2017, 19:01:52 UTC Shorten SMS.hcru_hcru.I1850CRUCLM45CN test to run for 1 day 21 July 2017, 19:01:52 UTC
dcd6898 Azamat Mametjanov 20 July 2017, 20:36:59 UTC Bebop building and batching updates 20 July 2017, 20:36:59 UTC
163fab6 Aaron Donahue 20 July 2017, 20:26:04 UTC Update CIME config files to be compatible with Livermore Computing Updates the Livermore Computing batch system to be SLURM based. Added machine info for the Livermore Computing quartz cluster. [BFB] - Bit-For-Bit 20 July 2017, 20:26:04 UTC
7a0c13f James Foucar 20 July 2017, 20:25:25 UTC Merge branch 'singhbalwinder/cime/add-acme-weekly-test-suite' into master (PR #1644) Adds acme weekly test suite This test suite has only atmospheric weekly tests for now. Other tests must be added to it. [BFB] - Bit-For-Bit * singhbalwinder/cime/add-acme-weekly-test-suite: Adds acme weekly test suite 20 July 2017, 20:25:59 UTC
279274f James Foucar 20 July 2017, 20:23:50 UTC Merge branch 'master' into singhbalwinder/cime/add-acme-weekly-test-suite * master: Add new fates suite Updates initialization of albedo for ALM's urban patches Change num_submits to num_resubmits Remove commented autochaining code Comment out most autochaining code. Add in setting RESUBMIT instead fixed special_acme commands Use the batch options to set qos Fix for csh oddity by invoking the csh shell explicitly to run Should fix the autochaining when it's taking the command line arguments Update environment on Summitdev Move Summitdev Depends file Point to new cprnc build Remove PAPI from edison. Remove the build flag as well the module load. [BFB] remove PAPI for cori-haswell and cori-knl Update netcdf for sandia machines. Correct MG2 rain number conservation limiter 20 July 2017, 20:23:50 UTC
29d860d James Foucar 19 July 2017, 22:51:13 UTC Merge branch 'jgfouca/cime/add_fates_suite' into master (PR #1653) Add new fates suite For small-scale testing of fates integration with ACME. [BFB] * jgfouca/cime/add_fates_suite: Add new fates suite 19 July 2017, 22:51:52 UTC
65532da James Foucar 19 July 2017, 22:49:37 UTC Add new fates suite For small-scale testing of fates integration with ACME. [BFB] 19 July 2017, 22:49:37 UTC
36ba559 Junqi Yin 19 July 2017, 17:47:38 UTC Merge branch 'bishtgautam/lnd/urban-albedo-fix' (PR #1647) Updates initialization of albedo for ALM's urban patches When the Sun is below the horizon, the land model returns an abledo greater than 1.0. This error is due to the way patch-to-grid averaging is implemented. This change ensure land model returns an albedo of 1.0 when the Sun is below the horizon. Fixes #1614 [non-BFB] 19 July 2017, 17:47:38 UTC
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