https://github.com/E3SM-Project/E3SM
- HEAD
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Revision | Author | Date | Message | Commit Date |
---|---|---|---|---|
0d79cae | Azamat Mametjanov | 09 August 2024, 02:02:32 UTC | Merge branch 'azamat/maint21-machines/add-improv' into maint-2.1 (PR #6542) Add ANL Improv to E3SM machines in maint-2.1. [BFB] | 09 August 2024, 02:02:32 UTC |
c90329e | Azamat Mametjanov | 09 August 2024, 01:48:52 UTC | Add ANL Improv to E3SM machines in maint-2.1 | 09 August 2024, 01:48:52 UTC |
6dce0f0 | Azamat Mametjanov | 09 August 2024, 01:41:57 UTC | Update cime submodule to extend module commands to any string | 09 August 2024, 01:41:57 UTC |
5bb36a1 | Jason Boutte | 30 July 2024, 20:52:16 UTC | Merge branch 'jasonb5/machinefiles/update-lc-machines_maint-2.1' into maint-2.1 (PR #6531) - Replaces gdata with workspace - Removes quartz machine - Adds dane machine [BFB] | 30 July 2024, 20:52:16 UTC |
27c82cf | Jason Boutte | 29 July 2024, 19:20:54 UTC | Updates gdata to workspace, removes quartz, adds dane | 29 July 2024, 19:20:54 UTC |
b861895 | Jason Boutte | 14 May 2024, 18:33:13 UTC | Merge branch 'jzhang/LC_machconf_maint-2.1' into maint-2.1 (PR #6382) - update mach config for Livermore Computing (maint-2.1) according to scream repo - have to remove --append in config_machines.xml for these two branches - the changes for maint-2.1 and maint-2.0 are the same ./create_test SMS.f19_g16.S and a WCYCL20TR test have passed build [BFB] | 14 May 2024, 18:33:13 UTC |
ee57568 | Jon Wolfe | 02 May 2024, 20:40:36 UTC | Merge branch 'darincomeau/drof/jra1p5-runoff-fix-maint-2.1' into maint-2.1 (PR #6383) Changing datestamp on JRA v1.5 runoff files to corrected versions (maint-2.1) This changes the datestamp on the JRA v1.5 runoff files to corrected versions that have fixed negative liquid runoff values around Greenland and Antarctica. These files have been staged in the public inputdata directory as world readable. [non-BFB] for compsets with JRAv1.5 forcing | 02 May 2024, 20:40:36 UTC |
191e7f8 | Darin Comeau | 01 May 2024, 19:19:02 UTC | Changing datestamp on JRA v1.5 runoff files to corrected versions for maint-2.1 | 01 May 2024, 19:19:02 UTC |
0459945 | jsbamboo | 01 May 2024, 01:40:57 UTC | update mach config for Livermore Computing (maint-2.1) | 01 May 2024, 01:40:57 UTC |
c034892 | Gautam Bisht | 02 April 2024, 18:48:51 UTC | Merge branch 'peterdschwartz/maint-2.1/fix-topo-weights' into maint-2.1 (PR #6297) `lun_pp%wttopounit` is added to the restart file and call to `compute_higher_order_weights` is added to the subgridRest module to ensure proper calculation of all weights prior to evaluating them. Fixes #6296 [BFB] | 02 April 2024, 18:48:51 UTC |
ea11c34 | Peter Schwartz | 02 April 2024, 15:38:52 UTC | added a space | 02 April 2024, 15:38:52 UTC |
6c0725e | Peter Schwartz | 18 March 2024, 19:07:27 UTC | Fixes issue with evaluating subgrid weights. lun_pp%wttopounit will now be read from restart file (if present) and then used to compute other weights prior to consistency/sanity checks | 18 March 2024, 19:07:27 UTC |
979fb1c | noel | 19 January 2024, 18:22:38 UTC | Merge branch 'ndk/maint-2.1/pm-cpu-update-jan2024' into maint-2.1 (PR #6158) Only affecting pm-cpu. No module version changes (except for updates to AMD compiler) and should be BFB. Primary change is adjusting PE layouts to remove CPL_PSTRID=8 hack as the performance issue with communication has been resolved and is no longer needed. The following 2 PR's describe most of these changes: Also included a bugfix made in the PR below to allow e3sm_prod suite to pass. [bfb] | 19 January 2024, 18:22:38 UTC |
e543f75 | noel | 19 January 2024, 17:14:37 UTC | updates to maint-2.1 for pm-cpu that were made to master | 19 January 2024, 17:14:37 UTC |
a48104d | James Foucar | 20 December 2023, 23:43:10 UTC | Merge pull request #6128 from E3SM-Project/jgfouca/kokkos_fix_for_maint2 Improve robustness of Kokkos build script It seems that, sometimes, the kokkos CMake will change the CMAKE_CXX_COMPILER to an absolute path before storing it in the cache. Subsequent calls to cmake that do not have -DCMAKE_CXX_COMPILER=$absolute_path_to_cxx will be interpreted as a changed compiler, which results in the CMakeCache being flushed and then results in CMAKE_INSTALL_PREFIX being lost. This is a known flaw in CMake that we must work around. Tested on mappy by building SMS_P12x2.ne4_oQU240.WCYCL1850NS which requires Kokkos. [BFB] | 20 December 2023, 23:43:10 UTC |
ef58318 | James Foucar | 08 February 2023, 17:57:47 UTC | Improve robustness of Kokkos build script It seems that, sometimes, the kokkos CMake will change the CMAKE_CXX_COMPILER to an absolute path before storing it in the cache. Subsequent calls to cmake that do not have -DCMAKE_CXX_COMPILER=$absolute_path_to_cxx will be interpreted as a changed compiler, which results in the CMakeCache being flushed and then results in CMAKE_INSTALL_PREFIX being lost. I'm not sure if this is a bug in CMake or Kokkos' cmake files, but this PR will work around the problem. [BFB] | 20 December 2023, 23:00:29 UTC |
0f362f4 | jayeshkrishna | 16 October 2023, 18:08:24 UTC | Merge branch 'jayeshkrishna/maint-2.1/scorpio_v1.4.2' (PR #5994) SCORPIO 1.4.2 includes, * Fix for a performance bug where the NetCDF header was reallocated multiple times, slowing down runs that create large output files * Support for ADIOS BP5 file format * Preliminary support (disabled by default) for HDF5 * Improved performance by reducing some collectives * Support for Perlmutter/Crusher/Frontier * Minor bug fixes [BFB] | 16 October 2023, 18:08:24 UTC |
f10ca9e | jayeshkrishna | 13 October 2023, 18:05:05 UTC | Updating SCORPIO from 1.3.2 to 1.4.2 SCORPIO 1.4.2 includes, * Fix for a performance bug where the NetCDF header was reallocated multiple times, slowing down runs that create large output files * Support for ADIOS BP5 file format * Preliminary support (disabled by default) for HDF5 * Improved performance by reducing some collectives * Support for Perlmutter/Crusher/Frontier * Minor bug fixes | 13 October 2023, 18:05:05 UTC |
23927ff | noel | 22 September 2023, 16:16:07 UTC | Merge branch 'ndk/maint-2.1/pm-cpu-add-intel' into maint-2.1 (PR #5938) Add intel compiler to maint-2.1 Cleanup pelayouts (remove cori, add/alter some pm-cpu and gcp) Remove cori machines Update cprnc location Update pm-cpu batch settings [bfb] | 22 September 2023, 16:16:07 UTC |
96cb355 | noel | 19 September 2023, 18:22:50 UTC | Add intel compiler to maint-2.1 Cleanup pelayouts (remove cori, add/alter some pm-cpu and gcp) Remove cori machines Update cprnc location Update pm-cpu batch settings | 19 September 2023, 18:22:50 UTC |
d4952ca | Robert Jacob | 10 April 2023, 22:56:40 UTC | Merge branch 'jillzhang/update_data_contact_maint-2.1' (PR #5589) Same data contact update but for maint-2.1 [BFB] | 10 April 2023, 22:56:40 UTC |
71bd52c | chengzhuzhang | 06 April 2023, 20:01:07 UTC | update data contact maint2.1 | 06 April 2023, 20:01:07 UTC |
1d0e2ed | Jon Wolfe | 23 February 2023, 20:43:33 UTC | Merge branch 'cbegeman/ocn/unmask-submeso-var-maint-2.1' into maint-2.1 (PR #5461) Bugfix for ocean submesoscale feature Fill value masking of the submesoscale variable normalMLEVelocity resulted in bad values in vertMLEBolusVelocityTop that affected timeMonthly_avg_mocStreamvalLatAndDepth. This bugfix removes masking of normalMLEVelocity. Fixes #5459 on maint-2.1 [BFB] | 23 February 2023, 20:43:33 UTC |
40ca47a | Carolyn Begeman | 16 February 2023, 23:07:44 UTC | Unmask normalMLEVelocity | 17 February 2023, 18:31:05 UTC |
f502d67 | Robert Jacob | 12 January 2023, 00:15:40 UTC | Merge branch 'rljacob/prep-v2.1-release' (PR #5389) Update README, LICENSE and codemeta.json for v2.1.0. Also add a CITATION.cff file which github and zenodo support. | 12 January 2023, 00:15:40 UTC |
5a58ff7 | Robert Jacob | 11 January 2023, 22:22:11 UTC | Merge branch 'rljacob/add-authors' (PR #5388) Add an AUTHORS file that lists institutions that have contributed to the code. | 11 January 2023, 22:22:11 UTC |
a621196 | Robert Jacob | 11 January 2023, 20:41:15 UTC | Update codemeta file Update codemeta.json file with v2.1 info | 11 January 2023, 20:41:15 UTC |
3c4071a | Robert Jacob | 10 January 2023, 22:43:55 UTC | Add a CITATION file Add a CITATION file supported by github and zenodo. | 10 January 2023, 22:43:55 UTC |
b24d9e8 | Robert Jacob | 10 January 2023, 22:39:57 UTC | Update copyright year Update copyright year on License. | 10 January 2023, 22:39:57 UTC |
17e0c29 | Robert Jacob | 10 January 2023, 22:39:16 UTC | Update README for v2.1.0 Update README with reserved DOI for v2.1.0 source code. Also update year,month in bibtex entry. | 10 January 2023, 22:39:16 UTC |
4605d2e | Robert Jacob | 10 January 2023, 22:02:43 UTC | Add an AUTHORS file Add an AUTHORS file as part of top level docs. | 10 January 2023, 22:02:43 UTC |
40429ab | Robert Jacob | 10 January 2023, 22:01:19 UTC | Merge branch 'sarich/testing/update-grid-tests' (PR #5316) New scripts to test grid utilities. These tests are running nightly on https://jenkins-gce.cels.anl.gov/job/E3SM_grid_tests This includes test for: cime/tools/mapping/gen_domain_files (already in cime) components/eam/tools/topo_tool/cube_to_target components/eam/tools/mkatmsrffile components/elm/tools/mksurfdata_map [BFB] | 10 January 2023, 22:01:19 UTC |
67fd54f | Benjamin Hillman | 10 January 2023, 18:47:02 UTC | Merge branch 'whannah/mmf/crm-interface-rm-m2005-add-p3' (#5346) This set of changes to the CRM interface code will be needed for the integration of the new PAM CRM w/ P3. I've omitted the changes to support SHOC for simplicity since we won't need these for the first MMF-PAM prototype. I also took the opportunity to drop MMF support for the M2005 micro scheme (which is likely already broken) and RRTMG. [BFB] | 10 January 2023, 18:47:02 UTC |
f6b5688 | noel | 09 January 2023, 20:58:03 UTC | Merge branch E3SM-Project/ndk/machinefiles/pm-cpu-adjust-link-line (PR #5359) For pm-cpu, pm-gpu, and alvarez, append "/lib" to link line flag looking for netcdf libs | 09 January 2023, 20:58:03 UTC |
7c4e727 | Oksana Guba | 09 January 2023, 16:49:16 UTC | Merge 'origin/oksanaguba/hommexx/change-ers-test' (PR #5360) [nonbfb] for that ERS test | 09 January 2023, 16:49:16 UTC |
6c2cc99 | Benjamin Hillman | 06 January 2023, 18:51:20 UTC | Merge branch 'whannah/mmf/change-pbuf-qt-to-qv' (#5342) This change for SAM++ is needed for the future upgrade to PAM, and also needed if we eventually put P3/SHOC into SAM++ (which seems unlikely now). This is non-BFB due to the fact floating point arithmetic is non-communitive, but the qualititive solution will not change. [non-BFB] MMF only | 06 January 2023, 18:51:20 UTC |
f636ffc | noel | 05 January 2023, 18:58:00 UTC | Merge branch E3SM-Project/ndk/machinefiles/pm-cpu-add-hi-res-layouts (PR #5374) For pm-cpu, add PE layouts to allow e3sm_hi_res suite to run | 05 January 2023, 18:58:00 UTC |
03f7d6d | Jon Wolfe | 05 January 2023, 17:33:23 UTC | Merge branch 'erinethomas/ww3/spectra-update' (PR #5368) Update ww3 spectra Update to WW3 to allow flexible options for spectral resolution of waves (N Freq x N Dir). Default is set to 36x36. Alternative options of high resolution (50x36) and low resolution (25x36). Defining case with 'alias' that includes "WW3" component will use default spectral resolution. Alternative options require use of "long name" to define components. [NML] [BFB] | 05 January 2023, 17:33:23 UTC |
c498794 | noel | 26 December 2022, 17:54:14 UTC | Merge branch E3SM-Project/ndk/machinefiles/pm-modup-dec22 (PR #5373) Update module versions for pm-cpu and pm-gpu after machine maintenance | 26 December 2022, 17:54:14 UTC |
3705ce9 | noel | 24 December 2022, 16:50:05 UTC | Add PE layouts for pm-cpu to allow e3sm_hi_res suite to run efficiently | 24 December 2022, 16:50:05 UTC |
5228f1c | noel | 23 December 2022, 20:36:04 UTC | Update module versions for pm-cpu and pm-gpu after machine maintenance | 23 December 2022, 20:36:04 UTC |
a120eb6 | Jason Sarich | 22 December 2022, 19:24:22 UTC | fix compile problems and arguments for mksurfdata.pl | 22 December 2022, 19:24:22 UTC |
5225bf4 | Jason Sarich | 21 December 2022, 16:59:21 UTC | Add documentation to tests | 21 December 2022, 16:59:21 UTC |
bce4e06 | Erin Thomas | 19 December 2022, 19:44:21 UTC | remove chrysalis pe config (not yet tested) | 19 December 2022, 19:44:21 UTC |
f595d92 | Peter Schwartz | 16 December 2022, 19:57:03 UTC | Merge branch 'bishtgautam/lnd/20TR-GSWP' (PR #5340) The alias for the 20TR BGC compset for BGC is corrected. [BFB] | 16 December 2022, 19:57:03 UTC |
4b872d5 | Jon Wolfe | 15 December 2022, 18:00:41 UTC | Merge branch 'akturner/mpas-seaice/refactor-velocity-init' (PR #5290) Refactor of MPAS-Seaice velocity solver Refactor of MPAS sea ice velocity solver to allow easier testing of new options and methods, including: * Move domain reference to within subroutines avoiding messy passing of variables * Move wachspress basis routines to separate module * Move triangular quadrature rules to new module * Move some mesh related routines to the mesh module * Rename block variable to blockPtr * Rename all pool types to end in Pool Fixes #5289 [BFB] | 15 December 2022, 18:00:41 UTC |
83d265b | Gautam Bisht | 15 December 2022, 17:56:03 UTC | Merge remote-tracking branch 'glemieux/fates-satphen-call-fix' (PR #5345) Move the fates-specific `satellitephenology` call out of an area that is unreachable when `fates` is active. Fixes https://github.com/NGEET/fates/issues/953. [Non-B4B] | 15 December 2022, 17:56:03 UTC |
a4520d5 | Azamat Mametjanov | 15 December 2022, 16:49:18 UTC | Merge branch 'azamat/crusher/update-project-name' (PR #5363) Update project name on Crusher. [BFB] | 15 December 2022, 16:49:18 UTC |
eb7a8cc | Azamat Mametjanov | 15 December 2022, 16:44:06 UTC | Merge branch 'azamat/anvil/bgc-pes-fix-OOM' (PR #5362) Increase ELM PEs in BGC runs on Anvil to avoid OOM issues. [BFB] | 15 December 2022, 16:44:06 UTC |
56a7e57 | Azamat Mametjanov | 15 December 2022, 01:12:43 UTC | Update project name on Crusher | 15 December 2022, 01:12:43 UTC |
0273cfa | Gautam Bisht | 14 December 2022, 20:00:40 UTC | Merge branch 'hongyili/mosart/mosart_heat_v3' (PR #5343) The use of uninitialized variables (i.e., `Qsur` and `Qsub`) in the computation of the change of energy due to heat exchange with the environment and advection is fixed. Currently, it is assumed that those changes in energy are zero. Fixes #5332 [BFB] | 14 December 2022, 20:00:40 UTC |
db896b2 | Jon Wolfe | 14 December 2022, 19:42:02 UTC | Merge branch 'darincomeau/ice/add-DMPAS-JRA1p5' (PR #5357) Add DMPAS-JRA1p5 compset Adds DMPAS-JRA1p5 compset: D-case with active sea ice only. Also adds PE layouts for any D-case on Chrysalis and Anvil, S layouts on 20 nodes, with ~47 and 23 SYPD, respectively. [BFB] | 14 December 2022, 19:42:02 UTC |
0614e7b | Jon Wolfe | 14 December 2022, 19:31:22 UTC | Merge branch 'mark-petersen/ocn/fix-intel-opt-decomp' (PR #5356) Move bottomDepthEdge calculation to single loop over all edges After #5195 was merged, the MPAS-Ocean standalone test ocean/baroclinic_channel/10km/decomp_test failed to match between 4 and 8 partitions, but only for intel optimized. All compass nightly suite tests passed for gnu debug, gnu optimized, intel debug. This PR solves the problem by merging the computation of bottomDepthEdge into a single edge loop. Previously it was split into two loops, 1:nEdgesOwned (with many other calculations) and another from nEdgesOwned+1:nEdgesArray(4). The intel optimized compiler must have changed order-of-operations in these two loops for different partitions. Fixes #5219 [BFB] | 14 December 2022, 19:31:22 UTC |
b6d9e0c | Azamat Mametjanov | 14 December 2022, 02:48:16 UTC | Increase ELM PEs in BGC runs on Anvil To avoid OOM issues. | 14 December 2022, 02:48:16 UTC |
8d4376f | Erin Thomas | 13 December 2022, 23:00:14 UTC | bug fix | 13 December 2022, 23:00:14 UTC |
a9ca88a | Erin Thomas | 13 December 2022, 21:26:51 UTC | removed non-supported mesh option from WW3 configuation | 13 December 2022, 21:26:51 UTC |
c0123a2 | Erin Thomas | 13 December 2022, 21:25:46 UTC | removed placeholder PE configurations for WW3 (PE configs will be added later after testing) | 13 December 2022, 21:25:46 UTC |
19a550e | Jon Wolfe | 13 December 2022, 18:47:23 UTC | Merge branch 'darincomeau/data_comps/add-JRA-1p5-cryo' (PR #5355) Add GMPAS-JRA1p5-DIB-ISMF compset Adds a new GMPAS-JRA1p5-DIB-ISMF compset, an updated version of the existing GMPAS-JRA1p4-DIB-ISMF compset that uses JRA v1.5. This compset is for use with ocean meshes with ice-shelf cavities, and uses prognostic ice-shelf basal melting, and prescribed iceberg forcing. To compensate for this Antarctic runoff, the rofi and rofl fields have been zeroed out below 60S in the modified runoff forcing files. New modified runoff files (with the no_rofi_no_rofl tag are on the public inputdata server and world readable. [BFB] | 13 December 2022, 18:47:23 UTC |
8dac39f | Jon Wolfe | 13 December 2022, 18:43:37 UTC | Merge branch 'xylar/mpas-framework/rename-nersc-build-targets-to-cray' (PR #5281) Clean up "*-nersc" build targets in MPAS standlone build system Remove pgi-nersc and cray-nersc, which are not used or supported. Rename intel-nersc and gnu-nersc to intel-cray and gnu-cray, espectively, as they should work on other cray machines as well such as Chicoma. [BFB] | 13 December 2022, 18:43:37 UTC |
9aa622e | Jon Wolfe | 13 December 2022, 18:34:34 UTC | Merge branch 'trhille/mali/develop-221115' (PR #5309) Update MALI version This merge includes numerous updates to MALI. The major updates include: • A glacier retreat parameterization based on change in ocean thermal forcing and subglacial runoff • Coupling to a 1-D global sea level model • A CFL-like limit on time step length based on calving velocity • A new definition of the grounding line that depends on the flotation condition, which no longer includes the grounded marine margin if that is above the flotation thickness. This is necessary for mass budget calculations Minor changes include: • The ability to use rate-based and damage threshold-based calving parameterizations simultaneously • Spatially variable calving stress thresholds for the von Mises stress calving parameterization • An option to prevent positive surface mass balance in ice-free regions • An optional clean-up for rate-based iceberg calving routines • New fields containing the basal mass balance that was actually applied in a time step • Logic that prevents the original input basal mass balance field from ever being modified in case of an instability in the thermal solver • Clean up for compiling with Intel, including memory bug fix in Sea Level Model • Bug fixes necessary for regional statistics output • A step to remove isolated regions of dynamic floating ice connected to the rest of the ice shelf by non-dynamic ice. These were causing the velocity solver to fail in simulations with evolving calving • Additional new calving metrics and minor bug fixes • A new field that defined the flux across the grounding line on cell centers • Use indexToCellID(iCell) instead of iCell in log messages • Write out additional fields to ascii files to import into Albany • Bug fixes in MALI–Sea Level Model coupling: initialize variables [NML] [non-BFB] for configurations with MALI | 13 December 2022, 18:34:34 UTC |
54fac7c | Oksana Guba | 12 December 2022, 23:28:01 UTC | switch to _D | 12 December 2022, 23:28:01 UTC |
b3f20e1 | Jon Wolfe | 12 December 2022, 18:55:39 UTC | Replace some where/elsewhere/elsewhere coding to make pgi happy | 12 December 2022, 18:55:39 UTC |
7c078d7 | Jon Wolfe | 12 December 2022, 17:20:36 UTC | Merge branch 'mkstratos/mpas/mpas-multi-instance' (PR #5123) Add instance string to MPAS output filenames Creates a stream file for multiple instances of MPAS Ocean and Sea Ice. Adds the instance string to streams.ocean_* and streams.seaice_* output and restart filenames Fixes #5122 [BFB] | 12 December 2022, 17:20:36 UTC |
bd9e2ac | noel | 10 December 2022, 23:32:09 UTC | Merge branch E3SM-Project/ndk/machinefiles/alvarez-module-update (PR #5347) For alvarez at NERSC, update modules to defaults. | 10 December 2022, 23:32:09 UTC |
d922e2a | noel | 10 December 2022, 01:18:38 UTC | For pm-cpu, pm-gpu, and alvarez, append "/lib" to link line flag looking for netcdf libs. The builds were still picking up the libraries (or didn't need them), but this looks better and can help another effort to build stand-alone tool. `-L$ENV{CRAY_NETCDF_HDF5PARALLEL_PREFIX}/lib` [bfb] | 10 December 2022, 01:18:38 UTC |
8950d28 | noel | 09 December 2022, 23:36:35 UTC | Merge branch E3SM-Project/ndk/machinefiles/gcp-MEMLEAK-allowance (PR #5350) On GCP only, add larger allowance for MEMLEAK detection in tests | 09 December 2022, 23:36:35 UTC |
824850e | mark-petersen | 08 December 2022, 20:26:53 UTC | Change nEdgesArray to nEdgesHalo | 08 December 2022, 21:04:25 UTC |
39c37fc | Jon Wolfe | 08 December 2022, 16:15:26 UTC | Move setting of branch/hybrid init files inside of inst loop | 08 December 2022, 16:15:26 UTC |
be4f238 | Darin Comeau | 07 December 2022, 23:17:38 UTC | Adding DMPAS-JRA1p5 compset and PE layouts for LCRC | 07 December 2022, 23:17:38 UTC |
a4be221 | Darin Comeau | 07 December 2022, 20:35:49 UTC | Add support for a GMPAS-JRA1p5-DIB-ISMF compset for cryo | 07 December 2022, 20:35:49 UTC |
34d2fc9 | jayeshkrishna | 07 December 2022, 19:50:50 UTC | Merge branch 'jayeshkrishna/externals/scorpio_1_4_1' (PR #5348) Updating the version of SCORPIO submodules to 1.4.1 This release includes the following changes, * Fix for a performance bug where the NetCDF header was reallocated multiple times, slowing down runs that create large output files * Support for ADIOS BP5 file format * Preliminary support (disabled by default) for HDF5 * Improved performance by reducing some collectives * Support for Perlmutter/Crusher * Minor bug fixes [BFB] | 07 December 2022, 19:50:50 UTC |
95a4541 | Hong-Yi Li | 07 December 2022, 18:45:43 UTC | adding a mosart-heat test directly into the e3sm_mosart_developer suite | 07 December 2022, 18:45:43 UTC |
582899e | mark-petersen | 06 December 2022, 20:14:57 UTC | Move bottomDepthEdge calculation to single loop over all edges | 07 December 2022, 14:20:31 UTC |
e0b5c9f | Erin Thomas | 06 December 2022, 20:48:19 UTC | minor clean up for PE layout | 06 December 2022, 20:48:19 UTC |
b5e9eb9 | Erin Thomas | 06 December 2022, 20:43:46 UTC | Default WW3 spectral resolution updated to 36x36 | 06 December 2022, 20:43:46 UTC |
90fb60d | noel | 06 December 2022, 20:35:40 UTC | Merge branch E3SM-Project/ndk/machinefiles/pm-cpu-layouts-e3sm-prod (PR #5338) For pm-cpu (and alvarez), adjust/add PE layouts. | 06 December 2022, 20:35:40 UTC |
5994e45 | The Excavator | 06 December 2022, 20:27:08 UTC | On GCP only, add larger allowance for MEMLEAK detection in tests and add a slightly smaller allowance for TPUT. This fixes a fail for one test in e3sm_extra_coverage ERP_Lm3.ne4_oQU240.F2010.gcp_gnu | 06 December 2022, 20:27:08 UTC |
d5b864c | Andrew M. Bradley | 06 December 2022, 18:42:01 UTC | Merge branch 'ambrad/elm/fix-scream-2057' (PR #5334) ELM: Use intent(inout) to preserve values in early exit. In PhotosynthesisMod.F90, early exits from brent and brent_PHS do not assign gs_mol outputs values. The desired behavior in those cases is for the input values to be retained. Thus, this commit changes intent(out) to intent(inout) for these variables. The original code usually works because Fortran normally doesn't overwrite these inputs at the start of the routine. But if an option like crayftn's -hzero is provided, intent(out) stack variables are 0-init'ed, causing a bug. Fixes SCREAM issue 2057. e3sm.log was being filled with messages like this: 7: Ball-Berry error check - stomatal conductance error: 7: 0., 52577.053632404488 The 0 in the second line is important: it implies that gs_mol was being set to 0 unintentionally. e3sm_developer passes on Chrysalis. [BFB] | 06 December 2022, 18:42:01 UTC |
8025078 | Jon Wolfe | 05 December 2022, 20:37:31 UTC | Merge branch 'jonbob/mpas-framework/fix-missing-threadnum' (PR #5337) Add missing code to set threadNum before its use Fixes an issue where a variable threadNum was used before it was set Fixes #5333 [BFB] | 05 December 2022, 20:37:31 UTC |
627683e | Jon Wolfe | 05 December 2022, 20:34:11 UTC | Merge branch 'cbegeman/ocn/mask-time-series-stats-vars' (PR #5325) Mask ocean time series stats variables This PR applies fill value masking to non-restart time series stats streams in the ocean component. It also specifies the masking array for a subset of variables in the Registry. Fixes #5253 [BFB] | 05 December 2022, 20:34:11 UTC |
146732c | Benjamin Hillman | 05 December 2022, 20:19:16 UTC | Merge branch 'brhillman/eam/update-rrtmgp-20221117' (#5336) Update YAKL and RRTMGP. MMF tests will DIFF due to new FFT libraries in YAKL backend, but everything else should be BFB. [non-BFB] | 05 December 2022, 20:19:16 UTC |
f687930 | Gautam Bisht | 05 December 2022, 20:15:00 UTC | Merge branch 'peterdschwartz/lnd/add-endwb-restart' (PR #5311) Required for runs that restart at the beginning of a month as TWS_MONTH_BEGIN is calculated at beginning of each timestep. [BFB] Fixes #5079 | 05 December 2022, 20:15:00 UTC |
be81aed | Jon Wolfe | 05 December 2022, 19:35:37 UTC | Merge branch 'mark-petersen/mpas/shallow-water-comments' (PR #5303) Add comments to mpas shallow water code These are comments only, to explain the RK4 algorithm and coefficients. There is an identical PR for MPAS-Dev at MPAS-Dev/MPAS-Model#667. We still use the shallow water core for teaching and testing purposes, so better documentation is useful. [BFB] | 05 December 2022, 19:35:37 UTC |
9f91b69 | jayeshkrishna | 05 December 2022, 18:26:50 UTC | Updating to SCORPIO 1.4.1 Updating the version of SCORPIO submodule to 1.4.1 This release includes the following changes, * Fix for a performance bug where the NetCDF header was reallocated multiple times, slowing down runs that create large output files * Support for ADIOS BP5 file format * Preliminary support (disabled by default) for HDF5 * Improved performance by reducing some collectives * Support for Perlmutter/Crusher * Minor bug fixes | 05 December 2022, 18:32:38 UTC |
a7e823d | Azamat Mametjanov | 05 December 2022, 17:41:25 UTC | Merge branch 'azamat/chrysalis/add-oneapi' (PR #5240) Add Intel OneAPI compiler on Chrysalis. [BFB] | 05 December 2022, 17:41:25 UTC |
ff3f377 | Hong-Yi Li | 04 December 2022, 18:34:39 UTC | adding a new test for mosart-heat | 04 December 2022, 18:34:39 UTC |
46a0794 | noel | 03 December 2022, 00:24:50 UTC | For alvarez at NERSC, update modules to defaults. Including using GNU 12.1 | 03 December 2022, 00:24:50 UTC |
ba073dd | Erin Thomas | 02 December 2022, 23:34:01 UTC | cleaning up minor stuff | 02 December 2022, 23:34:01 UTC |
666595e | noel | 02 December 2022, 20:25:57 UTC | Merge branch E3SM-Project/ndk/machinefiles/cori-hires-test-pe-layout (PR #5344) For cori-knl, add PE layout for a new test in e3sm_hi_res suite. | 02 December 2022, 20:25:57 UTC |
04b0bc5 | Erin Thomas | 02 December 2022, 17:35:14 UTC | add compy perlmutter configurations (may need to be altered for optimization) to cime_config/allactive/config_pesall.xml | 02 December 2022, 17:35:14 UTC |
e6853b9 | Erin Thomas | 02 December 2022, 17:27:35 UTC | added mach PE Layout options for Cori to cime_config/allactive/config_pesall.xml | 02 December 2022, 17:27:35 UTC |
04dd4df | Erin Thomas | 02 December 2022, 16:35:37 UTC | Minor edits to comments | 02 December 2022, 16:35:37 UTC |
6df7197 | James Foucar | 02 December 2022, 16:30:13 UTC | Merge branch 'jgfouca/cmake_cxx_standard' into master (PR #5339) CMake: Set E3SM CXX standard globally Not in macros. [BFB] | 02 December 2022, 16:30:13 UTC |
9f9ec11 | Erin Thomas | 02 December 2022, 01:08:00 UTC | ww3/cime_config/buildnml is throwing an error when it check that the ww3 grid and spectral combination is supported. This is commented out for now. needs to be fixed in future. | 02 December 2022, 01:08:00 UTC |
63574fe | Erin Thomas | 02 December 2022, 00:45:55 UTC | minor bug fix | 02 December 2022, 00:45:55 UTC |
9bb8a35 | Erin Thomas | 02 December 2022, 00:42:51 UTC | bug fix in buildnml | 02 December 2022, 00:42:51 UTC |
bc2b299 | Erin Thomas | 02 December 2022, 00:32:44 UTC | minor clean up for ww3/cime_config/config_component.xml | 02 December 2022, 00:32:44 UTC |
e70b7ef | Erin Thomas | 02 December 2022, 00:21:57 UTC | set spectral option for WW3 to be set as part of the COMPONENT i.e. the component long lame = WW3%sp50x36, WW3%sp36x36,WW3%sp25x36. if you use WWW3 with a short alias, the default at the moment is 50x36. This will be updated to a default spectral resolution of 36x36 in the near future. | 02 December 2022, 00:21:57 UTC |
81a2c3c | Azamat Mametjanov | 01 December 2022, 23:27:40 UTC | Update JLSE to currently default oneapi module Prior oneapi/eng-compiler/2022.01.30.008 is now broken/deprecated | 01 December 2022, 23:27:40 UTC |
63810b8 | Gregory Lemieux | 01 December 2022, 22:53:37 UTC | remove doalb check for fates satphen call | 01 December 2022, 22:53:37 UTC |