| bbe2266 | Takanori Nakane | 07 February 2024, 03:51:27 UTC | Added MPCCD-8B0-2-008 (assembled from outer panels of older SWD MPCCDs) | 07 February 2024, 03:51:27 UTC |
| 58766bb | Takanori Nakane | 23 May 2023, 11:01:12 UTC | cheetah-dispatcher: use CrystFEL 0.10.2+XGANDALF instead of CrystFEL 0.6.3+DirAx. We have been using CrystFEL 0.6.3+DirAx because XGANDALF was too slow for quick feedback and newer versions of CrystFEL gave worse hit rates with DirAx. After our cluster upgrade, XGANDALF with the --xgandalf-fast-execution option is fast enough. To override this to use the default (slower) indexing, set --xgandalf-sampling-pitch=6 --xgandalf-grad-desc-iterations=4 in crystfel.args. | 23 May 2023, 11:01:12 UTC |
| f588845 | Takanori Nakane | 07 November 2022, 08:57:20 UTC | Supported MPCCD-8B0-2-007 and MPCCD-8B0-2-005. | 07 November 2022, 08:57:20 UTC |
| 9cf47a7 | Takanori Nakane | 13 October 2021, 01:20:20 UTC | prepare-cheetah-sacla-api2.py: added panel names to bad regions for CrystFEL 0.10.0. This is still compabile with older CrystFEL down to at least 0.6.3. | 13 October 2021, 01:20:20 UTC |
| fe8fdd5 | Takanori Nakane | 13 October 2021, 01:20:01 UTC | Get rid of CMake warnings | 13 October 2021, 01:20:01 UTC |
| 305d6f1 | Takanori Nakane | 12 October 2021, 09:07:57 UTC | GUI: repaired automatic submission for Python3 | 12 October 2021, 09:07:57 UTC |
| 9e645b9 | Takanori Nakane | 09 September 2021, 09:06:48 UTC | Change the job settings to 16 cores and 50 GB | 09 September 2021, 09:06:48 UTC |
| f1018ab | Takanori Nakane | 09 September 2021, 09:06:21 UTC | Add rpath | 09 September 2021, 09:06:21 UTC |
| a17a467 | Takanori Nakane | 09 September 2021, 08:08:37 UTC | Python 3 compatibility | 09 September 2021, 08:08:37 UTC |
| 4095064 | Takanori Nakane | 09 September 2021, 06:30:23 UTC | Compatibility with the 3rd generation SACLA HPC system. - Use DataAccessUserAPI and DataArrayUserAPI 1.0.0. - Removed cheetah-sacla-api for the now-extinct API 1. | 09 September 2021, 06:30:23 UTC |
| 49a2395 | Takanori Nakane | 19 February 2020, 21:28:06 UTC | The new phase 3 detector has wider amplifier shields. | 19 February 2020, 21:28:06 UTC |
| 2952002 | Takanori Nakane | 07 February 2020, 21:13:08 UTC | Use open/close status for BL3 as well. | 07 February 2020, 21:13:08 UTC |
| a311999 | Takanori Nakane | 23 January 2020, 15:13:05 UTC | Repair cmake for HDF5-HL linking | 23 January 2020, 15:13:05 UTC |
| 1ed3b33 | Takanori Nakane | 23 January 2020, 15:12:43 UTC | Cheetah also uses both open and close shutter status. | 23 January 2020, 15:12:43 UTC |
| 66f0be7 | Takanori Nakane | 23 January 2020, 13:52:55 UTC | Revert "Use Direct Chunk Write for the deflate filter (TODO: shuffle filter)" This reverts commit c6aff859465a7d873db6d8cdb9333a3521890b78. | 23 January 2020, 13:52:55 UTC |
| f7ce852 | Takanori Nakane | 23 January 2020, 13:51:31 UTC | BL2: Use both shutter open and close status values to find dark images | 23 January 2020, 13:51:31 UTC |
| f6cf442 | Takanori Nakane | 22 January 2020, 17:00:42 UTC | Version 200121 | 22 January 2020, 17:00:42 UTC |
| d2c396a | Takanori Nakane | 21 January 2020, 11:09:34 UTC | Severely damaged Phase3 MPCCD is MPCCD-8B0-2-003. Others are fine (e.g. MPCCD-8B0-2-006 from 2020). | 21 January 2020, 11:09:34 UTC |
| e70de57 | Takanori Nakane | 28 October 2019, 22:54:31 UTC | Mask dead read-out ports in Phase III MPCCD. | 28 October 2019, 22:54:31 UTC |
| c6aff85 | Takanori Nakane | 30 July 2019, 07:20:32 UTC | Use Direct Chunk Write for the deflate filter (TODO: shuffle filter) | 30 July 2019, 07:20:32 UTC |
| 58565b9 | Takanori Nakane | 29 July 2019, 20:56:52 UTC | Move type conversion out of the mutex-locked region | 29 July 2019, 20:56:52 UTC |
| 37cfeb5 | Takanori Nakane | 29 July 2019, 20:53:44 UTC | More masks for severely damaged Phase 3 detector | 29 July 2019, 20:53:44 UTC |
| e38ea6d | Takanori Nakane | 15 April 2019, 15:24:36 UTC | Make the cell red when the hit rate is too high (> 75 %) | 15 April 2019, 15:24:36 UTC |
| 5093442 | Takanori Nakane | 05 July 2018, 07:42:35 UTC | This is version 180704. | 05 July 2018, 07:42:35 UTC |
| 967ced4 | Takanori Nakane | 04 July 2018, 22:33:49 UTC | cheetah_dispatcher: save cheetah.log (because the queue system's log is not readable by others) | 04 July 2018, 22:33:49 UTC |
| 2a5f906 | Takanori Nakane | 04 July 2018, 22:33:11 UTC | BM1 PD can be 'saturated'. Added --dry-run to the preparation script. | 04 July 2018, 22:33:11 UTC |
| a505228 | Takanori Nakane | 23 February 2018, 08:33:12 UTC | Tentative workaround for 2018 Feb shutter troubles. | 23 February 2018, 08:33:12 UTC |
| 9af34c0 | Takanori Nakane | 23 February 2018, 08:31:44 UTC | Supported job submission from CUI. Supported crystfel.args file | 23 February 2018, 08:31:44 UTC |
| 5aeee95 | Takanori Nakane | 12 February 2018, 22:40:38 UTC | Supported runs in 18 Feb with unreliable shutter status | 12 February 2018, 22:40:38 UTC |
| d57c48c | Takanori Nakane | 23 November 2017, 08:27:37 UTC | Guard against zero division in LLFpassed and processed. | 23 November 2017, 08:27:37 UTC |
| faffc21 | Takanori Nakane | 17 November 2017, 08:35:55 UTC | Remove maxI (completely!). Code contributed by Keitaro Yamashita. | 17 November 2017, 08:35:55 UTC |
| fa7eb24 | Takanori Nakane | 30 October 2017, 12:29:54 UTC | Make default clen to 50.0. | 30 October 2017, 12:29:54 UTC |
| e71a130 | Takanori Nakane | 23 August 2017, 02:32:22 UTC | Removed LLF support, station option and stride option. Now the beamline can be selected in the GUI. | 23 August 2017, 02:32:22 UTC |
| 7ca8ba7 | Takanori Nakane | 30 July 2017, 01:57:41 UTC | Make hit rates in the table consistent with the dialog. (%hits = hit / accepted, not hit / total) | 30 July 2017, 01:57:41 UTC |
| beb717e | Takanori Nakane | 30 July 2017, 01:40:58 UTC | Color the status column. No edges in the progress bar. | 30 July 2017, 01:40:58 UTC |
| 1d0fa9a | Takanori Nakane | 12 July 2017, 06:09:36 UTC | Log hostname during a run Make edge masks wider | 16 July 2017, 06:56:51 UTC |
| a628ac9 | Takanori Nakane | 08 July 2017, 11:49:34 UTC | Improved metadata handling to make it robust against job resubmission. | 16 July 2017, 06:56:39 UTC |
| 111d0a6 | Takanori Nakane | 25 April 2017, 09:19:47 UTC | Supported masks for the 'compact' MPCCD | 25 April 2017, 09:19:47 UTC |
| 8c2e3f9 | Takanori Nakane | 04 April 2017, 08:55:03 UTC | Enable the shuffle filter | 04 April 2017, 08:55:03 UTC |
| 668a3c9 | Takanori Nakane | 18 February 2017, 05:47:22 UTC | Do not prefix run numbers with 0 | 18 February 2017, 05:47:22 UTC |
| e1bb468 | Takanori Nakane | 18 February 2017, 02:10:49 UTC | Workaround for the cases where the inline spectrometer is not available | 18 February 2017, 02:10:49 UTC |
| c30f149 | Takanori Nakane | 16 February 2017, 09:50:52 UTC | Updated cheetah_dispatcher to use prepare-cheetah-sacla-api2.py | 16 February 2017, 09:50:52 UTC |
| 66f01a3 | Takanori Nakane | 10 February 2017, 06:02:52 UTC | Comment about negative pixels | 10 February 2017, 06:02:52 UTC |
| 5997f5d | Takanori Nakane | 10 February 2017, 04:55:49 UTC | Added error handling and tidied up the geometry. | 10 February 2017, 04:55:49 UTC |
| 9aa8c2b | Takanori Nakane | 10 February 2017, 03:21:01 UTC | Write metadata and pixelmask | 10 February 2017, 03:21:01 UTC |
| 1d4e4bc | Takanori Nakane | 09 February 2017, 10:20:58 UTC | Added --clen option | 09 February 2017, 10:20:58 UTC |
| d01165a | Takanori Nakane | 09 February 2017, 10:11:47 UTC | Support BL2 in prepare-cheetah-sacla-api2.py | 09 February 2017, 10:11:47 UTC |
| 45dfd09 | Takanori Nakane | 09 February 2017, 10:10:03 UTC | Fix treatment of negative values in prepare-cheetah-sacla-api. (but the detector used in BL3 does not seem to produce negative values) | 09 February 2017, 10:10:03 UTC |
| 9905638 | Takanori Nakane | 09 February 2017, 10:06:09 UTC | Fix treatment of negative values in prepare-cheetah-sacla-api2. | 09 February 2017, 10:06:09 UTC |
| d860134 | Takanori Nakane | 09 February 2017, 07:39:10 UTC | Started porting prepare-cheetah-sacla-api2 to Python | 09 February 2017, 07:39:10 UTC |
| 56a5734 | Takanori Nakane | 09 February 2017, 03:20:34 UTC | Use API in cheetah-sacla-api2 to get the tag list to support 60 Hz operation. Surprisingly, the end_tag from the API is exclusive (not in the run)! | 09 February 2017, 03:20:34 UTC |
| bca9388 | Takanori Nakane | 09 February 2017, 02:04:48 UTC | Use the mean photon energy from a spectrometer, not the accelerator-configured value. The first is more accurate and the latter is broken in some runs (2015 Oct BL3, 2016 Dec BL2). | 09 February 2017, 02:04:48 UTC |
| 674f030 | Takanori Nakane | 06 February 2017, 09:55:35 UTC | Never use stride | 06 February 2017, 09:55:35 UTC |
| c9709ca | Takanori Nakane | 06 February 2017, 09:08:43 UTC | Compress geometry and dark h5 files | 06 February 2017, 09:08:43 UTC |
| 7981e72 | Takanori Nakane | 01 February 2017, 01:20:52 UTC | Use API in prepare-cheetah-sacla-api2 to get the tag list to support 60 Hz operation | 01 February 2017, 01:20:52 UTC |
| 413f4ce | Takanori Nakane | 20 January 2017, 05:34:39 UTC | Supported beamline 2 | 20 January 2017, 05:34:39 UTC |
| f18b92f | Takanori Nakane | 06 December 2016, 08:39:00 UTC | Remove CrystFEL's temporary directory | 06 December 2016, 08:39:00 UTC |
| 28396f8 | Takanori Nakane | 19 October 2016, 09:35:07 UTC | Immediately stop child jobs if the parent job failed. | 19 October 2016, 09:35:07 UTC |
| 9f4db68 | Takanori Nakane | 19 October 2016, 09:15:55 UTC | sacla-dark.h5 must be linked the last | 19 October 2016, 09:15:55 UTC |
| e2e60f0 | Takanori Nakane | 19 October 2016, 09:10:31 UTC | The status line was wrong. | 19 October 2016, 09:10:31 UTC |
| 6526b3c | Takanori Nakane | 19 October 2016, 08:55:19 UTC | Better error handling in prepare-cheetah-sacla-api2. Hopefully, this fix the problem with runs without any image. | 19 October 2016, 08:55:19 UTC |
| e1ec900 | Takanori Nakane | 19 October 2016, 08:42:05 UTC | More robust detector selection which looks for MPCCD-8.*-1 | 19 October 2016, 08:42:05 UTC |
| 0e248d8 | Takanori Nakane | 18 October 2016, 01:22:09 UTC | Added "monitor" mode without the submit button. | 18 October 2016, 01:22:09 UTC |
| a6992c5 | Takanori Nakane | 07 September 2016, 07:27:59 UTC | Fixed stdout/err path | 07 September 2016, 07:27:59 UTC |
| 8bbf6ce | Takanori Nakane | 07 September 2016, 05:53:19 UTC | Adapted for new SACLA HPC (PBS job system) | 07 September 2016, 05:53:19 UTC |
| f0bf117 | Takanori Nakane | 07 September 2016, 05:32:05 UTC | Added the header for strcmp | 07 September 2016, 05:33:05 UTC |
| 9e4a3e0 | Takanori Nakane | 15 July 2016, 11:27:58 UTC | Ignore 'dark' frames until the first 'light' | 15 July 2016, 11:27:58 UTC |
| 5aea189 | Takanori Nakane | 08 June 2016, 05:39:54 UTC | Added --max_jobs option. Added reference. | 08 June 2016, 05:39:54 UTC |
| 164a6dd | Takanori Nakane | 08 June 2016, 05:30:17 UTC | Deprecated --submit_dark2 and added --submit_dark_to instead. NEED TESTING! | 08 June 2016, 05:30:17 UTC |
| 36b1c8c | Takanori Nakane | 08 June 2016, 03:05:57 UTC | Fixed typo | 08 June 2016, 03:05:57 UTC |
| d38b28f | Takanori Nakane | 25 May 2016, 07:19:44 UTC | Supported the 3rd photodiode | 25 May 2016, 07:19:44 UTC |
| 9a8cff3 | Takanori Nakane | 24 May 2016, 06:09:15 UTC | Added the --submit_dark_any option (type -dark) for the Ln-Dm scheme NEED TESTING | 24 May 2016, 06:09:15 UTC |
| bcf9bbd | Takanori Nakane | 05 April 2016, 07:55:53 UTC | Version 160404 | 05 April 2016, 07:55:53 UTC |
| 9b54ae5 | Takanori Nakane | 04 April 2016, 09:06:34 UTC | Supported EH2 (station 2) Fixed a stupid bug in the detector selection TODO: Need to refactor! | 04 April 2016, 09:06:34 UTC |
| aa2aecc | Takanori Nakane | 16 March 2016, 06:49:02 UTC | cheetah-dispatcher bug fix AutoQsub for dark2 cell_explorer dialog | 16 March 2016, 06:49:02 UTC |
| 3e066d6 | Takanori Nakane | 18 February 2016, 00:46:28 UTC | Cheetah-dispacher: Confirm exit. Fixed buttons in message dialogs. | 18 February 2016, 00:46:28 UTC |
| 08fae9b | Takanori Nakane | 08 February 2016, 00:54:54 UTC | Avoid 'too many threads' error when starting with many directories | 08 February 2016, 00:54:54 UTC |
| ce2aff9 | Takanori Nakane | 03 February 2016, 12:56:59 UTC | Guard against zero division in "Count sums" | 03 February 2016, 12:56:59 UTC |
| 1fe6ba6 | Takanori Nakane | 31 January 2016, 00:41:25 UTC | Fixed index rate when #hits is 0 Fixed GUI layout when PD textboxes are not shown | 31 January 2016, 00:41:25 UTC |
| b405594 | Takanori Nakane | 27 January 2016, 02:29:31 UTC | Fix to peak resolution calculation | 27 January 2016, 02:29:31 UTC |
| 2c53df3 | Takanori Nakane | 27 January 2016, 02:15:00 UTC | Look at shutter status to get the number of dark frames | 27 January 2016, 02:15:00 UTC |
| 2b47766 | Takanori Nakane | 25 January 2016, 02:33:12 UTC | Cheetah-dispatcher: sum light and dark separatedly. | 25 January 2016, 02:33:12 UTC |
| 25a8728 | Takanori Nakane | 21 January 2016, 07:06:33 UTC | Cheetah-Dispatcher small improvements - parsing of indexed.cnt - added --submit_dark2 - autoscan directories every 5 sec | 21 January 2016, 07:06:33 UTC |
| 6c6617c | biochem_fan | 08 January 2016, 05:30:42 UTC | Merge branch 'master' of https://github.com/biochem-fan/cheetah | 08 January 2016, 05:30:42 UTC |
| aacc10e | Takanori Nakane | 05 January 2016, 07:33:43 UTC | Added cheetah-dispatcher GUI. Made PD sensor names modifiable. | 05 January 2016, 07:33:43 UTC |
| 172e008 | Takanori Nakane | 05 January 2016, 02:07:49 UTC | use NDET instead of 8 | 05 January 2016, 02:07:49 UTC |
| 8d079d3 | biochem_fan | 20 November 2015, 08:59:13 UTC | Update README.md Cite Joti, 2015. Obsolete cheetah-sacla-api. | 20 November 2015, 08:59:13 UTC |
| 7ee8673 | Takanori Nakane | 20 November 2015, 08:09:41 UTC | check shutter in api2. From now on, we will add new features only to api2. api1 is maintained for backward compatibility (before 14 Jul). | 20 November 2015, 08:09:41 UTC |
| 01054d7 | Takanori Nakane | 20 November 2015, 07:07:24 UTC | version 151116 | 20 November 2015, 07:07:24 UTC |
| e12616c | Takanori Nakane | 16 November 2015, 08:50:14 UTC | Allow non-six digit Run IDs. | 16 November 2015, 08:50:14 UTC |
| 2e67a06 | Takanori Nakane | 11 November 2015, 00:32:00 UTC | Install prepare-cheetah-sacla-api and api2 | 11 November 2015, 00:32:00 UTC |
| 0d88ecf | Takanori Nakane | 11 November 2015, 00:28:36 UTC | Merge branch 'newapi' | 11 November 2015, 00:28:36 UTC |
| 0917b98 | Takanori Nakane | 10 November 2015, 12:09:37 UTC | Updated for library version 0.11.0 linking with libldap is necessary secured data access not yet tested | 10 November 2015, 12:09:37 UTC |
| 8c7c795 | Takanori Nakane | 04 October 2015, 02:21:26 UTC | Check shutter status & reset gain after failed read. This to fix broken RunCtrlGUI. TODO: Use API to get tag list. Fix api2. | 04 October 2015, 02:21:26 UTC |
| da191b7 | Takanori Nakane | 02 October 2015, 12:37:53 UTC | Block parallelization for new offline API | 02 October 2015, 12:37:53 UTC |
| f915e54 | Takanori Nakane | 02 October 2015, 09:27:03 UTC | Added prepare-cheetah-sacla-api (a.k.a averageImageGain) Added version number | 02 October 2015, 09:27:03 UTC |
| 92ee428 | Takanori Nakane | 02 October 2015, 09:16:33 UTC | Merge branch 'newapi' | 02 October 2015, 09:16:33 UTC |
| 95147f3 | Takanori Nakane | 02 October 2015, 09:11:22 UTC | added prepare-cheetah-sacla-api2 (a.k.a averageImageGain2) | 02 October 2015, 09:11:22 UTC |
| d957897 | Takanori Nakane | 02 October 2015, 01:18:11 UTC | New API version ready for use | 02 October 2015, 01:18:11 UTC |
| 8ae0dae | Takanori Nakane | 30 September 2015, 15:10:14 UTC | newapi branch to support new offline API for SACLA added cheetah-sacla-api2 command. not compilable yet. | 30 September 2015, 15:10:14 UTC |
