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39789d3 noel 09 May 2023, 15:36:56 UTC for pm-cpu intel build, which uses new oneapi version, add Depends rule to build one certain mpas file with ifor instead of ifx as a work-around for internal compielr error 09 May 2023, 15:36:56 UTC
87adaa3 Robert Jacob 07 May 2023, 22:29:18 UTC Merge branch 'jillzhang/update_data_contact' (PR #5587) The support of e3sm-data-support@listserv.llnl.gov will be dropped. Update the contact of global attribute of all components (eamxx already has the updated contact)to e3sm-data-support@llnl.gov. [BFB] 07 May 2023, 22:29:18 UTC
9a9f734 noel 06 May 2023, 18:24:25 UTC Merge branch E3SM-Project/ndk/homme/fix-bounds-error (PR #5660) Fix out-of-bounds error by only looking at array when scm_multcols enabled 06 May 2023, 18:24:25 UTC
61d2783 Wuyin Lin 06 May 2023, 02:41:19 UTC Merge branch 'mingxuanwupnnl/atm/chemUCI_VBS_SOA' (PR #5625) Implement VBS SOA and couple it with chemUCI This PR provides the capability of running VBS SOA treatment with chemUCI. The PR is a stealth feature which does not turn on VBS by default. It is built on premerged chemUCI branch wlin/atm/PM_4707_debug. One conditional compilation if statement: VBS_SOA (add -vbs in CAM_CONFIG_OPTS) The code modifications are mainly for: 1. replace default SOA gas-aerosol partition subroutine mam_soaexch_1subarea with new VBS partition subroutine mam_soaexch_vbs_1subarea 2. Now there are 8 SOAG species, and 7 (SOAG15, 24, 35, 34, 33, 32, 31) of them will condense to form SOA. SOAG0 is the gas precursor emitted. Many changes in modal_aero_amicphys.F90 are made for the index, as now nsoa == 1 but nsoag == 7 (default is nsoa ==1 and nsoag == 1) 3. A new chemistry mechanism file is added, pp_chemUCI_linozv3_mam4_resus_mom_vbs_tag.in. [BFB] 06 May 2023, 02:41:19 UTC
93a4ed4 noel 05 May 2023, 21:00:22 UTC Merge branch from E3SM-Project/ndk/machinefiles/pm-cpu-pelayout-nothreads (#5655) For pm-cpu, change all default PE layouts to use 1 thread (no threading) 05 May 2023, 21:00:22 UTC
c9a0d20 Jon Wolfe 05 May 2023, 17:43:26 UTC Merge branch 'cbegeman/ocn/add-wetting-drying-ramp-feature' (PR #5590) Add ocean wetting-and-drying ramp feature This PR enhances the existing wetting-and-drying algorithm using an approach from O'Dea et al. 2020. Instead of zeroing out normalVelocity and normalVelocity tendencies in cells where the projected layerThickness drops below the user-defined minimum, this method ramps down the normalVelocity and its tendencies between a range of layerThicknesses. Wetting-and-drying is currently only used in standalone ocean runs. [BFB] 05 May 2023, 17:43:26 UTC
87cea71 Robert Jacob 05 May 2023, 16:40:59 UTC Merge branch 'jonbob/datm/reduce-jra15-files' (PR #5639) Several testing platforms fail the new SMS_D_Ld1.TL319_EC30to60E2r2.DTESTM-JRA1p5 test because the JRA1p5 dataset currently needs to download all its data to run. This fixes that problem in much the same way that PR #5150 did with the previous version of JRA, by removing the hard-coded start and end year from 1958/2020 to be the start/end values specified by DATM_CLMNCEP_YR_START/DATM_CLMNCEP_YR_END. It also adds a new mpas-seaice testdef to specify year 1958 for a simple test, and replaces the old test with this new one, SMS_D_Ld1.TL319_EC30to60E2r2.DTESTM-JRA1p5.mpassi-jra_1958. [BFB] 05 May 2023, 16:40:59 UTC
6f9e0f0 Wuyin Lin 04 May 2023, 17:02:27 UTC Merge branch 'wlin/atm/e90_3dtroppz_ssp_testmod' (PR #5656) tentative ssp testmod and control for E90 related calculations/output New format linoz data for SSP compset pending, tentative fix is introduced to allow wcprodssp test to proceed. PR #4707 (UCI-chem) introduced E90 for determining 3D tropopause. However, compsets not using UCI-chem do not use E90 species, lead to variables related to 3D tropopause effectively uninitialized but could still be involved in calculations and sent to outfld. It causes randomness in output fields, hence NBFB in tests when re-run, or invalid values that are rejected by IO API. Fixes #5613 (tentative), #5637, #5643 [NBFB] for tests comparing eam.h0 (e.g., wcprod, cosplite_nhtfrq5) 04 May 2023, 17:02:27 UTC
c3db834 Wuyin Lin 04 May 2023, 16:57:23 UTC Merge branch 'ndk/atm/zero-col-delta-uninit' (PR #5659) Fix uninitialized col_delta in mo_gas_phase_chemdr.F90 Set col_delta = 0._r8 before calling set_ub_col() to ensure all values are valid. col_delta(:,:,3) would never be assigned values when not using linozv3 (i.e., not using tracer O3LNZ), but would still be used in calculations that loop through all species, causing floating point exception captured in debug mode. It has no impact on simulation result. Fixes #5636. [BFB] 04 May 2023, 16:57:23 UTC
e0e475b Jon Wolfe 03 May 2023, 19:30:08 UTC Merge branch 'cbegeman/ocn/add-drag-features' (PR #5475) New ocean drag feature: use harmonic mean edge layer thickness Here we add a new drag feature to MPAS-Ocean. The namelist option config_thickness_drag_type indicates what method is to be used for computing the layer thickness at edges used in the implicit drag term. The default option, 'centered', is bit-for-bit and retains the arithmetic mean computation. The new option, 'harmonic-mean', uses the harmonic mean of the neighboring cell layer thickness, thus increasing the drag anywhere there are horizontal gradients in layer thickness. When used, this change improves the performance of MPAS-Ocean in wetting-and-drying simulations relative to the analytical solution in the test case from Warner et al. (2013). [NML] [BFB][stealth] 03 May 2023, 19:30:08 UTC
119d716 noel 03 May 2023, 18:28:18 UTC Merge branch E3SM-Project/ndk/machinefiles/gcp12-pelayout-adjust (PR #5606) For gcp12 machine, update PE layouts 03 May 2023, 18:28:18 UTC
5cefd39 noel 03 May 2023, 18:11:10 UTC Solution to fix out of bounds error by only testing an array when needed 03 May 2023, 18:11:10 UTC
bf44e57 Wuyin Lin 03 May 2023, 02:29:44 UTC Add E90 index to control E90 and 3D tropopause related calculations and output 03 May 2023, 02:29:44 UTC
2129362 noel 02 May 2023, 20:00:29 UTC For all pm-cpu PE layouts, change to use 1 thread (no threading). will not be BFB 02 May 2023, 20:00:29 UTC
311f2d0 noel 02 May 2023, 15:16:52 UTC Merge branch E3SM-Project/ndk/machinefiles/pm-cpu-add-intel2 (PR #5649) Add the intel compiler to pm-cpu 02 May 2023, 15:16:52 UTC
1f4e321 Jon Wolfe 01 May 2023, 20:14:40 UTC Merge branch 'philipwjones/mpas-ocean/landice-accfix' (PR #5618) Added missing OpenACC data directives for ocean landIceEdgeFraction OpenACC data directives for a new landIceEdgeFraction array were missing so it was not present on the device for later loops. Added appropriate directives to fix this issue and also added a missing deallocate for the same array. Also fixed some ACC directives for another cell-centered landIceFraction array that didn't change functionality but is more performant. Fixes #5615 [BFB] 01 May 2023, 20:14:40 UTC
e371cfc Jon Wolfe 01 May 2023, 20:10:20 UTC Merge branch 'darincomeau/scripts/add-cryo-hist-ssp-compsets' (PR #5616) Add Polar historical/SSP compsets Adds new Polar compsets that are similar to WCYCL20TR, WCYCLSSP585, WCYCLSSP370, except uses Polar settings for Antarctic runoff (disables Antarctic runoff from the coupler to the ocn, includes ice-shelf melt fluxes and data icebergs). [BFB] for all currently tested configurations 01 May 2023, 20:10:20 UTC
33355fe noel 01 May 2023, 20:05:37 UTC remove customization 01 May 2023, 20:05:37 UTC
5a5ab15 noel 01 May 2023, 20:04:44 UTC these needed for intel pm-cpu builds 01 May 2023, 20:04:44 UTC
96c3726 noel 01 May 2023, 20:04:11 UTC initial addition of intel compiler on pm-cpu 01 May 2023, 20:04:11 UTC
6e7ebc0 Wuyin Lin 30 April 2023, 02:11:30 UTC Tentative removal of linoz O3 vars from eam exclude list for wcprodssp testmod 30 April 2023, 02:11:30 UTC
7d7d7ec Mingxuan Wu 28 April 2023, 23:30:02 UTC fix submodules 28 April 2023, 23:30:02 UTC
de075c7 Jon Wolfe 28 April 2023, 16:52:41 UTC Merge branch 'mark-petersen/ocn/remove-unused-variables' (PR #5610) Remove unused variables in ocean The variables tidalPotentialZMid and nTidalPotentialConstituents are defined in the Registry but not used for any computations. This tricks the gnu compiler in optimized mode, which removes them internally. The simulation then dies when the i/o references these variables on initialization. Fixes #5609 [BFB] 28 April 2023, 16:52:41 UTC
7ab58cf Jon Wolfe 28 April 2023, 16:35:58 UTC Merge branch 'njeffery/seaice/ispol-column-forcing-Dtest' (PR #5506) Adds a 1D bgc forcing test case and a bgc D-TEST New data file with atmospheric, ocean and biogeochemical data from the 2004 Ice Station Polarstern (ISPOL) Weddell Sea experiment from June 16, 2004 to December 31, 2004. Core 2 from the ISPOL location fills out the remainder of the year. A uniform_1D initial condition was added for flexible initialization of BGC. Atmophere and Ocean forcing use the nCells dimension of 1. A new testcase - single_cell_ispol - was added to the MPAS-Seaice_standalone_framework to verify this forcing and initialization. The ISPOL bgc forcing can be used with any of the gridded physics forcing datasets for testing purposes. [NML] [BFB] 28 April 2023, 16:35:58 UTC
e4426d3 mingxuanwupnnl 28 April 2023, 15:29:09 UTC remove files for tests 28 April 2023, 15:29:09 UTC
774f35e noel 27 April 2023, 23:21:12 UTC Set col_delta = 0._r8 before calling set_ub_col() to ensure all values are initialized as the GNU compiler was stopping at a later point. 27 April 2023, 23:21:12 UTC
30c9390 Jon Wolfe 27 April 2023, 21:24:23 UTC Add new harmonic_mean_drag testdef and add a corresponding stealth test 27 April 2023, 21:24:23 UTC
d3fe361 Azamat Mametjanov 27 April 2023, 21:14:02 UTC Merge branch 'azamat/anvil/revert-rrm-test-pes' (PR #5642) Revert RRM WCYCL1850 from new 20- to old 29-node PEs to avoid OOM. [NML] - in cime_pes namelists [non-BFB] - in mpaso AM outputs 27 April 2023, 21:14:02 UTC
99526e1 mingxuanwupnnl 27 April 2023, 20:42:15 UTC Merge branch 'master' into mingxuanwupnnl/atm/chemUCI_VBS_SOA 27 April 2023, 20:42:15 UTC
910340b Azamat Mametjanov 27 April 2023, 02:06:58 UTC Revert RRM WCYCL1850 from new 20- to old 29-node PEs to avoid OOM 27 April 2023, 02:06:58 UTC
1ee1fc5 Jon Wolfe 26 April 2023, 20:31:28 UTC Reduce the number of files required for JRA_1p5 D-tests via a testdef 26 April 2023, 20:31:28 UTC
3e1e3db Wuyin Lin 26 April 2023, 20:13:29 UTC Merge branch 'wlin/atm/fix_rxt_rate_diags' (PR #5626) Fix work array dimension for vmr reaction rate The work array to save reaction rate in volume mixing ratio is inconsistent with the one passing in from caller, which cause debug mode run with gnu and nvidia compiler to fail. The calculations are for diagnostics. The issue has no impact on simulation results, nor the reaction rate diagnostics. Fixes #5624 Fixes #5632 [BFB] 26 April 2023, 20:13:29 UTC
809c6ab Carolyn Begeman 26 April 2023, 19:02:23 UTC fixup add harmonic mean drag option 26 April 2023, 19:02:23 UTC
cc7243f Jon Wolfe 12 April 2023, 21:08:06 UTC Make bld files consistent with Registry changes 26 April 2023, 18:53:37 UTC
de6b2bb Carolyn Begeman 07 March 2023, 15:01:06 UTC Changes to thickEdgeDragChoice 26 April 2023, 18:53:25 UTC
28ce135 Carolyn Begeman 18 February 2023, 19:34:26 UTC Add harmonic option to mannings drag 26 April 2023, 18:52:02 UTC
0ff8763 Carolyn Begeman 17 February 2023, 15:51:17 UTC Speed up harmonic drag computation 26 April 2023, 18:48:27 UTC
19ba904 Carolyn Begeman 04 January 2023, 23:55:04 UTC Add harmonic mean drag option 26 April 2023, 18:48:17 UTC
1d20fcb Carolyn Begeman 07 December 2022, 17:49:03 UTC Add drag thickness option to other implicit schemes 26 April 2023, 18:47:32 UTC
68d1bb3 Carolyn Begeman 07 December 2022, 16:20:30 UTC Use layerThickEdgeDrag in explicit bottom drag 26 April 2023, 18:44:47 UTC
55a726d Carolyn Begeman 07 December 2022, 16:13:22 UTC Assign layerThickEdgeDrag to layerThickEdgeMean 26 April 2023, 18:44:47 UTC
79a5c48 Carolyn Begeman 07 December 2022, 15:37:23 UTC Add layerThickEdgeDrag 26 April 2023, 18:44:38 UTC
73b90f7 Carolyn Begeman 26 April 2023, 02:42:13 UTC Add error message for single_layer and debugTracers 26 April 2023, 03:14:41 UTC
7832891 Jon Wolfe 25 April 2023, 16:24:29 UTC Clean up Registry to it is consistent with documentation 25 April 2023, 16:24:29 UTC
770e706 Carolyn Begeman 25 April 2023, 16:17:39 UTC fixup W&D ssh 25 April 2023, 16:17:39 UTC
4708a34 mingxuanwupnnl 24 April 2023, 22:03:29 UTC add compset F20TR_chemUCI-Linozv3_VBS for test purpose with modifed ne4_rtmoff_vbs 24 April 2023, 22:03:29 UTC
cb57a7a James Foucar 24 April 2023, 15:40:48 UTC Merge branch 'jgfouca/jenkins_fix_path' into master (PR #5627) jenkins_script: Fix path to jenkins_generic_job [BFB] 24 April 2023, 15:40:48 UTC
04cd2ee James Foucar 24 April 2023, 15:38:23 UTC jenkins_script: Fix path to jenkins_generic_job [BFB] 24 April 2023, 15:38:23 UTC
865fa3b James Foucar 24 April 2023, 15:29:14 UTC Merge branch 'jgfouca/add_jenkins_script' into master (PR #5617) jenkins_script: Move from CIME to E3SM [BFB] 24 April 2023, 15:29:14 UTC
86cb132 Wuyin Lin 23 April 2023, 16:01:28 UTC Fix work array dimension for vmr reaction rate 23 April 2023, 16:01:28 UTC
9861a8d Phil Jones 21 April 2023, 19:39:46 UTC Added missing OpenACC data directives for ocean landIceEdgeFraction OpenACC data directives for a new landIceEdgeFraction array were missing so it was not present on the device in later loop. Added appropriate directives and also a missing deallocate for the same array. Also fixed a missing variable in another present clause and changed a data directive for the related landIceFraction at cell centers. 21 April 2023, 20:40:05 UTC
16a0800 Wuyin Lin 21 April 2023, 20:27:16 UTC Merge branch 'wlin/atm/update_linozdata_after_ucichem' (PR #5614) Update linoz data to linozv3 style for all use cases linoz_data_file for all use cases have to be updated to Linozv3 style after the merge of UCI-chem to enable Linoz for v2 or v3. This fixes issue #5613 and should be merged together with #4707. [NBFB] for all involving full EAM config [NML] linoz_data_file changed 21 April 2023, 20:27:16 UTC
fd69908 Wuyin Lin 21 April 2023, 20:24:14 UTC Merge branch 'wlin/elm/fix_rs_drydep' (PR #5552) Update stomatal resistance to properly account for sunlit or shaded conditions This is to fix issue #5535, which exists in current repo but not exposed until testing with pre-merged branch for PR #4707. The original formulation of adding sunlit and shaded leaves in parallel did not consider the conditions when rssun and/or rssha = 0.0, which can not only causing floating invalid -- division by 0, but also leading to unrealistic dry deposition fluxes, hence rapid ozone loss. Other gas constituents can also be affected. [non-BFB] expected for all F, I, and B tests. But unclear why current master hasn't experienced issue. 21 April 2023, 20:24:14 UTC
0a84e53 Wuyin Lin 21 April 2023, 20:20:36 UTC Merge branch 'tangq/atm/UCI-chem' (PR #4707) Implement full interactive chemistry and Fast-J photolysis rates This PR adds the major developments from the atmospheric chemistry and radiation tasks for the E3SMv3 under the atmospheric physics NGD. The main changes include: . chemUCI interactive chemistry package in the troposphere . Linoz v3 for the stratospheric chemistry (The first two packages replace the O3v2 model and prescribed tropospheric oxidants). . Fast-J radiation package to calculate the photolysis rates for gas chemistry [non-BFB] [NML] 21 April 2023, 20:20:36 UTC
274954a James Foucar 21 April 2023, 18:20:20 UTC jenkins_script: Move from CIME to E3SM Also, tee the output so it appears in both the log and console output. [BFB] 21 April 2023, 18:20:36 UTC
f75ea19 Wuyin Lin 21 April 2023, 15:27:03 UTC Update linoz data to linozv3 style for all use cases 21 April 2023, 15:27:03 UTC
26d2571 Wuyin Lin 21 April 2023, 01:22:23 UTC Fix pdeldry array shape for linv2_strat_chem_solve Otherwise v2 test in debug mode would fail due to floating invalid [BFB] 21 April 2023, 01:22:23 UTC
9e3beed Darin Comeau 21 April 2023, 00:35:38 UTC Add Cryosphere historical/SSP compsets 21 April 2023, 00:35:38 UTC
7de62e4 Wuyin Lin 20 April 2023, 19:17:16 UTC Merge branch 'crterai/eam/p3_PR' (PR #5168) P3 cloud microphysics scheme Include P3 as an option for cloud microphysics scheme. In addition to code pertaining to the P3 scheme, the PR also adds two compsets (F20TR-P3 and F2010-P3) to run atmosphere-only simulations using P3. [Stealth] [NML] This causes three microphysics nml variables to be included for non-conventional atm configugrations 20 April 2023, 19:17:16 UTC
bcde903 Wuyin Lin 20 April 2023, 17:34:15 UTC Add testmods v3atm_rtmoff for ne30 and ne4 20 April 2023, 17:34:15 UTC
75552df Wuyin Lin 20 April 2023, 17:08:39 UTC Fixed array shape and threadhing and pe-layout issues causing NBFB in UCI-chem codes . Fixed array shape pdeldry in lin_strat_chem.F90 that would failed debug mode . Replaced ch4max calculation with a global constant. A tentative fix for NBFB that would otherwise have . Fixed codes for surface emission section in mo_gas_phase_chemdr.F90 that cause round-off NBFB when threading or pe-layout changes [NBFB] 20 April 2023, 17:08:39 UTC
28e2afd Wuyin Lin 20 April 2023, 17:01:06 UTC Update linoz_data_file to linv3 style for EAMv2's F2010 and F20TR This is necessary after merging UCI-chem codes into master to still supporting the use of linozv2, both for linoz data format and for logical flag that hardwires pattern matchng filename again string linv3 to set lin_strat_chem flag. [NBFB] for F2010 and F20TR 20 April 2023, 17:01:06 UTC
ecc0c1a mingxuanwupnnl 20 April 2023, 16:53:12 UTC correct some VBS changes 20 April 2023, 16:53:12 UTC
f8e6171 Wuyin Lin 20 April 2023, 16:51:22 UTC Initialize e90_ndx otherwise uninitilized values used when not having E90 20 April 2023, 16:51:22 UTC
20784fb Jon Wolfe 20 April 2023, 15:55:04 UTC Merge branch 'cbegeman/ocn/cleanup-drag-config' (PR #5595) Clean-up ocean bottom drag config options The main changes in this PR are with respect to the following config options to reduce confusion and configuration user errors: * config_bottom_drag_mode = 'implicit' or 'explicit' replaces the boolean options config_use_implicit_bottom_drag and config_use_explicit_bottom_drag. The effect of this is that now implicit and explicit drag cannot be used simultaneously. * the string option config_implicit_bottom_drag_type replaces a bunch of boolean config options. Formerly, only one implicit drag option could be used at a time, but multiple implicit drag config options could be set to .true. with little transparency about which implicit drag option took precedence. A minor change is worth noting: * config_use_vegetation_manning_equation is removed. Formerly, there were no situations where config_use_vegetation_drag and config_use_vegetation_manning_equation had different consequences, so now only config_use_vegetation_drag is used. [NML] [BFB] 20 April 2023, 15:55:04 UTC
fc282e7 Mark Petersen 19 April 2023, 21:04:22 UTC remove unused variables 19 April 2023, 21:04:22 UTC
2107bcb James Foucar 19 April 2023, 19:11:39 UTC Merge branch 'jgfouca/rename_conflicting_macro' into master (PR #5608) Rename gnu_docker.cmake to gnu_docker-scream.cmake [BFB] 19 April 2023, 19:11:39 UTC
e9be84a James Foucar 19 April 2023, 19:04:01 UTC Rename gnu_docker.cmake to gnu_docker-scream.cmake The 'docker' name is too generic and causing the addition of this file to E3SM to break the E3SM/CIME github CI. [BFB] 19 April 2023, 19:04:01 UTC
f5c2bc7 noel 19 April 2023, 18:08:39 UTC Make special adjustment for ne4 cases on gcp12 to handle mpas part files 19 April 2023, 18:08:39 UTC
545f215 Jon Wolfe 19 April 2023, 17:47:49 UTC Merge branch 'jonbob/seaice/add-ice-test-suite' (PR #5572) Add seaice developer test suite Add a small seaice developer test suite to e3sm_developer. [BFB] 19 April 2023, 17:47:49 UTC
401add3 crterai 19 April 2023, 16:08:10 UTC Remove unnecessary comments and declare public constants as parameters 19 April 2023, 16:08:10 UTC
cc5785c Peter Schwartz 19 April 2023, 15:56:48 UTC Merge branch 'bishtgautam/lnd/fix-f2010-cice-tests' (PR #5571) Adds default ELM surface datasets for the following two resolutions: -ne0np4_enax4v1 -ne0np4_twpx4v1 Fixes #5292 [BFB] 19 April 2023, 15:56:48 UTC
0440966 Carolyn Begeman 19 April 2023, 14:06:13 UTC Fix merge error 19 April 2023, 14:23:37 UTC
33255e2 mingxuanwupnnl 19 April 2023, 03:43:45 UTC add chem mech file for chemUCI+VBS including recent updates and bug fixes for the chem mech file 19 April 2023, 03:43:45 UTC
38bcad6 noel 19 April 2023, 01:39:51 UTC For gcp12 machine, update PE layouts (use new ice/ocn partitions) Slightly reduce number of tasks to build a single test from 24 to 20. [bfb] 19 April 2023, 01:39:51 UTC
e03b887 Jon Wolfe 18 April 2023, 19:03:07 UTC Make bld files consistent with Registry 18 April 2023, 19:03:07 UTC
2272238 Peter Schwartz 18 April 2023, 17:19:16 UTC Merge branch 'bishtgautma/lnd/fix-init'(PR #5565) Only the c-th index of altmax_lastyear_indx_col is set to zero within the do-loop. Fixes #5526 [BFB] 18 April 2023, 17:19:16 UTC
e22ed5c Jon Wolfe 18 April 2023, 15:15:04 UTC Merge branch 'xylar/mpas-seaice/move-inputdata-to-mpas-seaice' (PR #5545) Move from mpas-cice to mpas-seaice in inputdata This merge points all instances of inputdata/ice/mpas-cice instead to inputdata/ice/mpas-seaice. All files in inputdata/ice/mpas-cice have been rsynced into inputdata/ice/mpas-seaice into that directory. [BFB] 18 April 2023, 15:15:04 UTC
af044ea Wuyin Lin 17 April 2023, 22:24:11 UTC Make the subgrid variability factor for autorconversion to be consistent with the Qc exponent 17 April 2023, 22:24:11 UTC
cab0558 Jon Wolfe 17 April 2023, 22:08:28 UTC Update to v2 grids 17 April 2023, 22:08:28 UTC
62b2b04 Wuyin Lin 17 April 2023, 21:47:11 UTC Change to output in-cloud properties to after the cloud microphysics This is to incorporate v3atm's PR #25. The in-cloud properties should be outputted after the cloud microphysics tendencies are taken into account, whereas they are outputted in P3 without accounting for the microphysics calculations. This fix does not affect model simulations, but will affect all of offline analysis where in-cloud property is used. [non-BFB] 17 April 2023, 21:47:11 UTC
9a37e51 Carolyn Begeman 06 April 2023, 13:55:22 UTC Change rayleigh config for clarity 17 April 2023, 21:38:10 UTC
1a5cb5b Carolyn Begeman 03 March 2023, 23:28:57 UTC Add spatially-variable config warning 17 April 2023, 21:38:10 UTC
4551776 Carolyn Begeman 02 March 2023, 19:18:15 UTC Remove redundant vegetation configs 17 April 2023, 21:38:10 UTC
8a6f0a0 Carolyn Begeman 02 March 2023, 15:47:05 UTC Clean-up drag config options 17 April 2023, 21:38:10 UTC
2067b81 mingxuanwupnnl 17 April 2023, 19:52:14 UTC add VBS SOA to premerged chemUCI branch 17 April 2023, 19:52:14 UTC
4b3e611 Jon Wolfe 17 April 2023, 18:16:44 UTC Merge branch 'hkang/ocean/si-bug-fix' (PR #5600) Fix a bug in the SI solver Fixes a bug in the standalone MPAS-O build that was broken due to a missing 'USE_LAPACK' directive in the SI solver code (issued by #5598). Fixes #5598 [BFB] 17 April 2023, 18:16:44 UTC
709a369 Benjamin Hillman 14 April 2023, 17:35:16 UTC Merge branch 'brhillman/eamxx/scream-upstream-merge-20230405' (#5582) Bring in changes from downstream SCREAM repo to fix SCREAMv1 build errors. [BFB] 14 April 2023, 17:35:16 UTC
22a18f3 Jon Wolfe 14 April 2023, 15:34:17 UTC Merge branch 'erinethomas/ww3/d-plus-ww3-compset' (PR #5596) Update alias names for MPAS-SI testing D-compsets Update D compset alias names. These compsets are for MPAS-SI testing purposes only. Modification to D-JRA compset aliases - should be 'DTESTM' in alias (to differentiate from D compsets that use CICE) [BFB] 14 April 2023, 15:34:17 UTC
68076d4 Gautam Bisht 14 April 2023, 14:54:20 UTC Merge branch 'hongyili/mosart/mosart-sediment-v5' (PR #5591) MOSART-sediment, the suspended sediment module, takes lateral sediment yield fluxes from a land model (such as the soil erosion module in ELM) as the inputs and includes the description of riverine transport, erosion, and deposition processes. It also accounts for two major damming effects on suspended sediment load, direct sediment trapping effect and indirect flow regulating effect (via reservoir regulation of streamflow and hydraulic conditions). The scientific validation was conducted over the NLDAS2 domain (against observations from multiple USGS gages. The current parameter files are for the NLDAS2 domain only, although the process description is general and largely transferrable. [NML] 14 April 2023, 14:54:20 UTC
47f0bca Hyun Kang 14 April 2023, 05:29:24 UTC Fix a bug issued by #5598 - The standalone MPAS-O build was broken due to a missing 'USE_LAPACK' directive in the SI solver code. 14 April 2023, 05:35:27 UTC
a8fa0a6 Chris Terai 13 April 2023, 22:42:48 UTC Updates to namelist defaults when P3 is not turned on 13 April 2023, 22:42:48 UTC
5918d07 Jon Wolfe 13 April 2023, 15:40:36 UTC Merge branch 'mark-petersen/ocn/remove-redikappadata' (PR #5575) Remove ocean unused variable RediKappaData The variable RediKappaData exists in the Registry file but is not used in the code. It appears that the gnu compiler removes some underlying information about the array in optimized mode, and then the MPI communication hangs when it tries to communicate the size of the array. When the array is removed the simulation no longer hangs on start-up. Fixes #5574 [BFB] 13 April 2023, 15:40:36 UTC
c6ef0e0 Erin E Thomas 12 April 2023, 20:03:57 UTC Update config_compsets.xml DTEST-JRA1p5 renamed to "DTESTM-JRA1p5" 12 April 2023, 20:03:57 UTC
81bf10a Erin E Thomas 12 April 2023, 19:42:55 UTC Update config_compsets.xml modify 'DTEST-JRA1p5-WW3' to "DTESTM-JRA1p5-WW3" 12 April 2023, 19:42:55 UTC
ad37255 Jon Wolfe 12 April 2023, 18:40:12 UTC Merge branch 'hkang/ocean/si-openacc' (PR #5583) Add OpenACC directives in the semi-implicit barotropic mode solver The semi-implicit barotropic solver in E3SM ocean component has been ported on GPU by adding OpenACC directives. To compile MPAS-O with MAGMA or CUBLAS for GPU-accelerated linear algebra, some additions (USE_MAGMA, USE_CUBLAS) have been made to mpas-framework/Makefile. A subroutine si_halo_exch is added in the semi-implicit solver code, which is very experimental, to use GPU-aware MPI for local halo exchanges during solver iterations. The semi-implicit barotropic mode solver is not currently used in E3SM, so it does not affect default configurations. [BFB] 12 April 2023, 18:40:12 UTC
a6b2f55 Hyun Kang 06 March 2023, 20:57:45 UTC Add OpenACC directives in SI solver - Porting the semi-implicit barotropic mode solver on GPU using OpenACC directives - Update Makefile for MAGMA, CUBLAS, GPU_AWARE_MPI use - A subroutine 'si_halo_exch' is added in the SI solver code, which is very experimental, to use GPU-aware MPI for local halo exchanges during solver iterations. Add SI halo exch routine and related codes Implmentation of si_halo_exch Add SI solver opencacc code 11 April 2023, 21:34:47 UTC
2895bcd Jon Wolfe 11 April 2023, 18:36:09 UTC Merge branch 'akturner/mpas-seaice/weak-formulation-bug' (PR #5474) Fixes issues with weak sea ice spatial operators formulation Recent refactoring to sea ice velocity initialization broke some test cases using the weak formulation. This allows the weak formulation to run successfully. Fixes #5473 [BFB] 11 April 2023, 18:36:09 UTC
495183d James Foucar 11 April 2023, 15:18:05 UTC Merge branch 'jgfouca/cime_update_2023_04_05' into master (PR #5581) Update CIME submodule ... to 9a12fd20a6af1da27d128bb4710f7f41c36363ad Changes: 1) jenkins_generic_job: Add support for queue selection 2) Loosen the XSD xml specification for config_machines.xsd to be consistent with env_mach_specific.xsd 3) minor updates to allow moab driver 4) should not test timestep of stub components 5) Adding support for ADIOS for E3SM !!! Fixes: 1) bless_test_results: Fix mistake in re match counting 2) replay.sh: fixes restoring quotes to command arguments 3) create_test: fixes single_exe create_test option 4) check_input_data: Expand SharedArea coverage to entire implementation [BFB] 11 April 2023, 15:18:05 UTC
44e0758 Chris Terai 10 April 2023, 23:21:58 UTC Updates to P3 cime tests 10 April 2023, 23:21:58 UTC
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