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Revision Author Date Message Commit Date
fff7a58 noel 01 March 2022, 21:46:22 UTC For PM, relax stacksize resource limits 01 March 2022, 21:46:22 UTC
9590c42 noel 28 February 2022, 17:26:24 UTC Update module versions on Perlmutter (including to gnu v10) 28 February 2022, 17:26:24 UTC
0b756e5 noel 26 February 2022, 03:26:44 UTC Merge branch E3SM-Project/ndk/machinefiles/cori-update-gnuv9 (PR #4810) Update to gnu v9 for cori-haswell and cori-knl 26 February 2022, 03:26:44 UTC
c82a7d2 James Foucar 26 February 2022, 00:12:50 UTC Merge branch 'jgfouca/mappy_env_update' into master (PR #4814) Update SEMS modules used by sandia machines The names of the archived modules have changed. [BFB] * jgfouca/mappy_env_update: Update SEMS modules used by sandia machines 26 February 2022, 00:12:50 UTC
e55053e James Foucar 25 February 2022, 23:08:07 UTC Update SEMS modules used by sandia machines The names of the archived modules have changed. [BFB] 25 February 2022, 23:08:07 UTC
d2e2c20 noel 25 February 2022, 18:23:04 UTC Merge branch E3SM-Project/singhbalwinder/pelayout-rrm-wcycl-cori-knl (PR #4801) Modifies large(L) PE-Layout for RRM WCYCLE grid for Cori-KNL 25 February 2022, 18:23:04 UTC
85a787c noel 24 February 2022, 18:41:16 UTC Update to gnu v9 for cori-haswell and cori-knl Update cray-libsci as well on Cori not bfb 24 February 2022, 18:41:16 UTC
349138c Jon Wolfe 24 February 2022, 18:07:00 UTC Merge branch 'jonbob/mpas-ocean/add-jra-cmpaso' (PR #4805) Add CMPASO-JRA1p4 compset for testing Adds a new compset with active ocean only but using JRA1p4 forcing for datm and drof. [BFB] for all tested configurations 24 February 2022, 18:07:00 UTC
f7ea625 noel 24 February 2022, 16:45:16 UTC update comment for this PE layout change 24 February 2022, 16:45:16 UTC
af86826 Benjamin R. Hillman 23 February 2022, 17:07:29 UTC Merge branch 'brhillman/cime_config/reorganize-mmf-tests' (#4794) Organize the MMF tests that run in e3sm_integration into their own suite. This makes it easier to run just the MMF-relevant tests that would be run in e3sm_integration, without running the full e3sm_integration suite. [BFB] 23 February 2022, 17:07:29 UTC
a1afcee Wuyin Lin 23 February 2022, 16:15:15 UTC Merge branch 'singhbalwinder/atm/fix-uninit-vars' (PR #4803) Initializes uninitialized variables in ndrop.F90 Variables ndropmix and nsource were uninitialized in ndrop.F90. Effectively calculations loop from top_lev ( 100 Pa) to bottom level. The levels above 100 Pa as a result were not initialized, but the full arrays were sent to outfld, causing problem to PIO when NaN are present. They are both initialized to zero now. Fixes #4782 [BFB] 23 February 2022, 16:15:15 UTC
71508d0 Jon Wolfe 23 February 2022, 15:57:48 UTC Merge branch 'brian-oneill/ocean/openacc-tend-thick' (PR #4792) GPU port of thickness tendency with OpenACC GPU port of ocn_tend_thick and all subprocesses. Changes include: * replace mesh pool variables and arrays with counterparts in ocn_mesh module * remove meshPool from ocn_tend_thick subroutine calls in time integrator routines * resolve OpenACC error in mpas_ocn_diagnostics.F by copying needed arrays onto device in ocn_compute_land_ice_flux_input_fields routine * add OpenACC directives to loops in ocn_tend_thick and associated subroutines [BFB] 23 February 2022, 15:57:48 UTC
11cc0b3 Jon Wolfe 22 February 2022, 18:55:41 UTC Add CMPASO-JRA1p4 compset for testing 22 February 2022, 18:55:41 UTC
eafa475 Jon Wolfe 22 February 2022, 18:03:30 UTC Merge branch 'darincomeau/scripts/update-arrm60to10-ics' (PR #4795) Update ocean and sea ice ICs for ARRM60to10 mesh Updates the ocean and sea ice initial conditions for spun-up compsets using the ARRM60to10 grid. This is needed to replace the existing sea ice initial condition, which has one snow layer, and is not compatible with v2. These new ocean and sea ice initial conditions are generated from restarts from a one month G-case using cold start initial conditions. This also updates the ocean analysis mask file to include additional regions in addition to just Atlantic, which was the only one in the previous file it is replacing. [BFB] for all currently tested configurations 22 February 2022, 18:03:30 UTC
2d03fe0 James Foucar 22 February 2022, 17:19:44 UTC Merge branch 'jgfouca/cime_update_2022_02_15' into next (PR #4796) to 4f9ce69d21ba937af397412f6435c2429289f8ab Changes: 1) Remove rather than overwrite baseline contents with the create_test -o flag. 2) remove test release 3) Remove the remaining users of config_compilers.xml 4) Documentation fixes and automation Fixes: 1) Fixes test directories being removed on failure. 2) Misc E3SM fixes for problems caused by recent CIME refactors 3) Fixes for evv4esm, fixes nbfb tests Fixes #4789 [BFB] * jgfouca/cime_update_2022_02_15: CIME submodule update 22 February 2022, 17:19:44 UTC
14675e3 Benjamin R. Hillman 21 February 2022, 18:37:26 UTC Merge branch 'whannah/mmf/change-vt-water' (#4778) To avoid a complication with the upcoming P3 implementation in the MMF we need to modify the variance transport diagnostic routine (VT_diagnose) to use the prognostic total water variable (i.e. micro_field). Unfortunately, this change is not BFB because the some of diagnostic quantities (qv+qc+qi) is not BFB with the prognostic total water that they were derived from. This isn't a problem for CRM, but it does cause this specific change to be non-BFB. 21 February 2022, 18:37:26 UTC
946aecc Balwinder Singh 18 February 2022, 15:56:00 UTC Initializes uninitialized variables in ndrop.F90 18 February 2022, 15:56:00 UTC
9fba7ee Balwinder Singh 18 February 2022, 01:44:05 UTC Modifies large(L) PE-Layout for RRM WCYCLE grid for Cori-KNL The PE-Layout is modified to match the simulations which are being run on Cori-KNL 18 February 2022, 01:44:05 UTC
c7ef5c1 James Foucar 15 February 2022, 22:19:19 UTC CIME submodule update to 4f9ce69d21ba937af397412f6435c2429289f8ab Changes: 1) Remove rather than overwrite baseline contents with the create_test -o flag. 2) remove test release 3) Remove the remaining users of config_compilers.xml 4) Documentation fixes and automation Fixes: 1) Fixes test directories being removed on failure. 2) Misc E3SM fixes for problems caused by recent CIME refactors 3) Fixes for evv4esm, fixes nbfb tests [BFB] 15 February 2022, 22:19:19 UTC
0b6a40c Benjamin R. Hillman 15 February 2022, 21:26:05 UTC Organize MMF integration tests into suite Organize the MMF tests that run in e3sm_integration into their own suite. This makes it easier to run just the MMF-relevant tests that would be run in e3sm_integration, without running the full e3sm_integration suite. [BFB] 15 February 2022, 21:26:05 UTC
14c905a Darin Comeau 15 February 2022, 21:14:50 UTC Updating ocean and sea ice ICs for ARRM60to10 mesh 15 February 2022, 21:14:50 UTC
e9088f2 Brian O'Neill 11 February 2022, 20:55:10 UTC GPU port of ocn_tend_thick routines - resolve OpenACC error in mpas_ocn_diagnostics.F by copying needed arrays onto device in ocn_compute_land_ice_flux_input_fields routine - add OpenACC directives to loops in ocn_tend_thick and associated subroutines - copyout tendThick, surfaceThicknessFlux, and surfaceThicknessFluxRunoff back to host at end of ocn_tend_thick 11 February 2022, 20:55:10 UTC
684c226 Brian O'Neill 11 February 2022, 20:12:00 UTC replace mesh pool with ocn_mesh module - replace mesh pool variables and arrays with counterparts in ocn_mesh module - remove meshPool from ocn_tend_thick subroutine calls in time integrator routines 11 February 2022, 20:12:00 UTC
460ef4a Jon Wolfe 11 February 2022, 16:54:33 UTC Merge branch 'jonbob/mpassi/fix-bgc-branch' (PR #4779) Fix MPASSI BGC restarting for branch runs Branch runs currently are not BFB when mpassi BGC is enabled, due to a missing setting in the seaice driver. This PR fixes that issue. [BFB] for all tested configurations 11 February 2022, 16:54:33 UTC
ba3528c noel 09 February 2022, 22:28:50 UTC Merge branch E3SM-Project/ndk/machinefiles/PM-NODENAME_REGEX (PR #4780) Correct NODENAME_REGEX for Perlmutter 09 February 2022, 22:28:50 UTC
fba8cd0 Jon Wolfe 09 February 2022, 19:45:18 UTC Merge branch 'akturner/seaice/single-cell-test-case' (PR #4620) Add single cell test case Makes the following changes to mpassi standalone testing, which is not used by E3SM: * Updates single cell namelist file * Adds single cell test case with simple plotting of results * Updates data download script Fixes #4619 [BFB] 09 February 2022, 19:45:18 UTC
af24574 Wuyin Lin 09 February 2022, 18:25:22 UTC Merge branch 'wlin/atm/fix_narrm_4amip' (PR #4783) Enable northamericax4v1pg2_WC14to60E2r3 for AMIP DOCN added for searching component pattern in compset for the North America RRM. This is to enable the grid for F-case simulations which uses DOCN. A 30-node pe-layout (M) and a 60-node pe-layout (L) are also added for running on chrysalis with this grid. Fixed issue #4745 [BFB] 09 February 2022, 18:25:22 UTC
36bf9a9 Wuyin Lin 08 February 2022, 21:14:00 UTC Enable northamericax4v1pg2_WC14to60E2r3 for AMIP DOCN added for searching component pattern in compset for the North America RRM. This is to enable the grid for F-case simulations which uses DOCN. A 30-node pe-layout (M) and a 60-node pe-layout (L) are also added for running on chrysalis with this grid. [BFB] 08 February 2022, 21:14:00 UTC
447d2ba Jon Wolfe 08 February 2022, 16:20:56 UTC Merge branch 'trhille/framework/add-mostRecentAccessTime-attribute-to-streams' (PR #4752) Add mostRecentAccessTime attribute to streams Add a new attribute to streams called 'mostRecentAccessTime', which is useful when multiple time-levels are needed at once from an input file. The actualWhen argument to the MPAS_stream_mgr_read() routine is replaced with an optional argument saveActualWhen. The actualWhen argument was ambiguous when MPAS_stream_mgr_read was called in a way such that multiple streams were read; the actualWhen value returned came from the final stream read and could possibly be wrong for the other streams that were read. This also changes the land ice core to stop using actualWhen and replace it with saveActualWhen. Neither the ocean nor seaice cores use actualWhen so no other changes are necessary. [BFB] 08 February 2022, 16:20:56 UTC
d53434b noel 07 February 2022, 18:32:09 UTC Correct nodename regex for PM 07 February 2022, 18:32:09 UTC
377a2f6 Jon Wolfe 07 February 2022, 17:27:21 UTC Include config_do_restart_bgc in logic for restarts and branches 07 February 2022, 17:27:21 UTC
b45e1f6 Walter Hannah 04 February 2022, 23:31:19 UTC use prognostic total water variable in VT_diagnose 04 February 2022, 23:31:19 UTC
44814ae Azamat Mametjanov 03 February 2022, 21:50:52 UTC Merge branch 'azamat/jlse/update-oneapi-module' (PR #4775) Update JLSE OneAPI module. [BFB] 03 February 2022, 21:50:52 UTC
5aeac51 Azamat Mametjanov 03 February 2022, 21:39:42 UTC Update JLSE OneAPI module 03 February 2022, 21:39:42 UTC
740c4b2 Jon Wolfe 03 February 2022, 18:09:53 UTC Merge branch 'philipwjones/mpas-framework/reprosums' (PR #4700) Add new reproducible global sum module for MPAS components Adds new module to compute global sums of distributed arrays in a reproducible way so that they are independent of summation order (eg from different partitions). The 64-bit real algorithm is the same as the DDPDD in shr_reprosum but this interface supports some features that were added for internal MPAS use. [BFB] 03 February 2022, 18:09:53 UTC
ff1f175 noel 03 February 2022, 16:37:18 UTC Merge branch E3SM-Project/ndk/machinefiles/perlmutter-fix-NODENAME_REGEX (PR #4773) For Perlmutter, change NODENAME_REGEX to be "perlmutter" 03 February 2022, 16:37:18 UTC
acc4d50 Matthew Hoffman 03 February 2022, 02:00:12 UTC Only modify the mostRecentAccessTime is a stream was actually read Before this commit, a default value of '0000-01-01_00:00:00' was being saved to the new mostRecentAccessTime attribute on calls to mpas_stream_mgr_read() where a stream wasn't actually read because its alarm wasn't ringing. This commit initializes actualWhen_local to a non-time value in order to only set mostRecentAccessTime if actualWhen_local is successfully updated to a time by read_stream(). 03 February 2022, 02:00:12 UTC
fbf5530 noel 02 February 2022, 20:52:23 UTC Change the NODENAME_REGEX to be perlmutter to avoid conflicts with machines using "login". This change was possible after https://github.com/ESMCI/cime/issues/4133 It does require that users have proper setting of env var NERSC_HOST. [bfb] 02 February 2022, 20:52:23 UTC
bea0ad7 noel 02 February 2022, 20:04:41 UTC Merge branch E3SM-Project/ndk/machinefiles/gcp-pelayout-adjust-for-tests (PR #4766) For GCP, adjust default layouts for some common tests 02 February 2022, 20:04:41 UTC
f33f684 Azamat Mametjanov 02 February 2022, 19:51:56 UTC Merge branch 'azamat/bebop/set-pioroot1-erp' (PR #4772) Run low-res ERP test with pio_root=1 to fix a reported memleak. [BFB] 02 February 2022, 19:51:56 UTC
d9bbcc4 Matthew Hoffman 02 February 2022, 18:31:41 UTC Update comment description of MPAS_stream_mgr_read() Updated comments explain why the saveActualWhen argument is needed and why it is not possible to just always save the actualWhen time. 02 February 2022, 18:32:21 UTC
c8ca9fc Matthew Hoffman 02 February 2022, 18:25:26 UTC Revert "Remove saveActualWhen argument to mpas_stream_mgr_read()" This reverts commit 1baed5ebfaaa36165d1eb677f8a62806b97b2f4a. This revert goes with the revert in the previous commit. See commit message there for details. 02 February 2022, 18:25:26 UTC
f822d68 Matthew Hoffman 02 February 2022, 18:22:31 UTC Revert "Use a dummy value for actualWhen if a stream does not include xtime" This reverts commit c7817c6370a5d56d86a78cab543e3b09a5c8de29. The attempt to parse i/o error codes was not reliable because tests always returned MPAS_IO_ERR_PIO instead of more specific, useful error codes. Thus it was not possible to differentiate between xtime being missing from a file and any other i/o error that should be treated as a real error. 02 February 2022, 18:22:31 UTC
5834afa Peter Schwartz 02 February 2022, 17:01:42 UTC Merge branch 'evasinha/lnd/mod_param_harvest' (PR #4757) Modified parameters for miscanthus and switchgrass based on calibration and validation finalized for revised manuscript submitted in GMD https://gmd.copernicus.org/preprints/gmd-2021-244/ Minor edits in estimation of perennial crop harvest. [nonBFB] for crop tests. Fixes #4608 02 February 2022, 17:01:42 UTC
c7817c6 Matthew Hoffman 02 February 2022, 16:49:37 UTC Use a dummy value for actualWhen if a stream does not include xtime Some streams do not have the xtime variable. In those cases, attempting to access xtime leads to an error. This commit uses a dummy value for actualWhen if xtime is not present in an input file. 02 February 2022, 16:49:37 UTC
9f3096d Jon Wolfe 02 February 2022, 15:51:56 UTC Merge branch 'jonbob/scripts/add-jra-orrs18to6v3' (PR #4756) Add support for the oRRS18to6v3 grid to run with JRA forcing Adds a grid resolution and all necessary mapping files to support the high-res ocn/ice grid oRRS18to6v3 run with JRA forcing, which is on a TL319 datm grid. [BFB] 02 February 2022, 15:51:56 UTC
afbf194 Jon Wolfe 02 February 2022, 15:48:13 UTC Merge branch 'mark-petersen/ocn/init-mode-streams' (PR #4769) Add mode specification to conservation check streams Currently, the conservation check analysis member does not specify its MPAS mode. This was an oversight. Without including this, the conservation check stream is included in MPAS init mode. This can cause an error, and it is never needed for init mode anyway. All the other analysis members include these lines. [BFB] 02 February 2022, 15:48:13 UTC
1baed5e Matthew Hoffman 02 February 2022, 02:21:00 UTC Remove saveActualWhen argument to mpas_stream_mgr_read() Having saving of the actualWhen time being optional could lead to confusion if one accesses the new mostRecentAccessTime attribute elsewhere. This commit makes it so the actualWhen time is always saved for all streams that are read. Hence the saveActualWhen argument is deleted. 02 February 2022, 02:21:00 UTC
767728d Phil Jones 02 February 2022, 01:21:47 UTC added flag for IEEE compliance for reproducible sums some compiler options interfere with the reproducible global sum algorithm, so this flag prevents these optimization for the global sum module 02 February 2022, 01:21:47 UTC
d70ba2e Jon Wolfe 01 February 2022, 22:09:54 UTC Merge branch 'xylar/mpas-o/fix-init-realistic-coriolis' (PR #4750) Initialize Coriolis param in its own subroutine In situations where we do not expand the Earth sphere radius, the Coriolist parameter still needs to get initialized to a realistic value. This merge creates a new subroutine for initializing the Coriolis parameter that is called regardless of whether the Earth sphere is being expanded or not. This bug was reported in: MPAS-Dev/compass#304 This only affects MPAS-Ocean in init mode and is bit-for-bit in E3SM. [BFB] 01 February 2022, 22:09:54 UTC
098ae6c noel 01 February 2022, 16:58:35 UTC Merge branch E3SM-Project/ndk/machinefiles/PM-default-layouts (PR #4771) Change default 1-node layouts for perlmutter to be CPU/GPU aware 01 February 2022, 16:58:35 UTC
b71fa6e Azamat Mametjanov 01 February 2022, 01:17:44 UTC Merge branch 'azamat/tests/add-gpu-tests' (PR #4762) Add OpenACC, OpenMP and CXX GPU tests [BFB] 01 February 2022, 01:17:44 UTC
49f3c27 Azamat Mametjanov 01 February 2022, 00:47:46 UTC Run low-res ERP test with pio_root=1 Also add a python3 module on Bebop 01 February 2022, 00:47:46 UTC
bc7b877 Azamat Mametjanov 01 February 2022, 00:40:49 UTC Cleanup pelayouts for Blues 01 February 2022, 00:40:49 UTC
9f9c196 Azamat Mametjanov 01 February 2022, 00:38:45 UTC Cleanup pelayouts for Blues 01 February 2022, 00:38:45 UTC
8b2f4c5 The Excavator 31 January 2022, 20:13:18 UTC Make sure to use HDF5_USE_FILE_LOCKING=FALSE even when not using threads. 31 January 2022, 20:13:18 UTC
1b9422b noel 31 January 2022, 17:08:36 UTC Change default layout setting for perlmutter to use 64 MPI's when using cpu and 4 MPI's when gpu 31 January 2022, 17:08:36 UTC
acdc603 Phil Jones 31 January 2022, 17:01:11 UTC changed filename for Cmake build 31 January 2022, 17:01:11 UTC
9ba796b Mark Petersen 30 January 2022, 05:23:17 UTC Add mode=forward;analysis to conservation check 30 January 2022, 05:25:40 UTC
932c5b2 Azamat Mametjanov 29 January 2022, 02:21:49 UTC Add pgi version check 29 January 2022, 02:21:49 UTC
464f8cd Benjamin Hillman 28 January 2022, 22:43:31 UTC Merge branch 'whannah/mmf/remove-test-tasks' (#4760) The MMFXX test with ESMT enabled was still using a specific task/thread count even though we had fixed the issue that had forced us to use that approach, so this PR remedies this. [BFB] but requires new baseline for changed test name 28 January 2022, 22:43:31 UTC
ffaaf4a Phil Jones 28 January 2022, 22:29:30 UTC renamed MPAS global sum routines to match underscore convention 28 January 2022, 22:29:30 UTC
f5a2037 Phil Jones 28 January 2022, 22:24:28 UTC fixed missing explicit R4 declarations in MPAS global sum module 28 January 2022, 22:24:28 UTC
b085dc0 Azamat Mametjanov 28 January 2022, 00:12:35 UTC Add OpenACC, OpenMP and CXX GPU tests 28 January 2022, 00:12:35 UTC
78a51e7 Walter Hannah 27 January 2022, 21:26:51 UTC remove task spec for MMF test w/ ESMT 27 January 2022, 23:16:44 UTC
32ce6e8 James Foucar 27 January 2022, 22:42:37 UTC Merge branch 'bartgol/homme/remove-scream-ifndef-occurrence' into master (PR #4761) HOMME: remove one occurrence of the CPP ifndef SCREAM The guarded function (push_forcing_to_c) is used unguarded later on, so a link error would ensue. Since the C function is compiled regardless of the SCREAM macro, the simple solution is to remove this ifndef guard. NOTE: this should NOT affect any code/build that does not define the SCREAM macro. Such codes/builds were already preprocessing the file as if the ifndef wasn't there at all. [BFB] * bartgol/homme/remove-scream-ifndef-occurrence: HOMME: remove one occurrence of the CPP ifndef SCREAM 27 January 2022, 22:42:37 UTC
0590e44 Luca Bertagna 27 January 2022, 22:33:40 UTC HOMME: remove one occurrence of the CPP ifndef SCREAM The guarded function (push_forcing_to_c) is used unguarded later on, so a link error would ensue. Since the C function is compiled regardless of the SCREAM macro, the simple solution is to remove this ifndef guard. NOTE: this should NOT affect any code/build that does not define the SCREAM macro. 27 January 2022, 22:33:40 UTC
5f05bf9 Peter Schwartz 27 January 2022, 20:14:24 UTC Merge branch 'azamat/elm/fix-datatype-memleaks' (PR #4711) Duplicate allocations lead to memory leaks. Addresses #4709 [BFB] 27 January 2022, 20:14:24 UTC
3a1b5ed noel 27 January 2022, 16:20:21 UTC Merge branch E3SM-Project/azamat/cori/fates-memleak-tolerance (PR #4739) Set memleak tolerance at 15% for FATES tests on Cori 27 January 2022, 16:20:21 UTC
9bd403b James Foucar 26 January 2022, 22:24:45 UTC Merge branch 'bartgol/homme/cmake-changes' into master (PR #4749) Some minor CMake changes in Homme These changes only affect Homme standalone (since EAM does not use CMake). They allow a cmake host project to retain control of compiler flags, rather than having Homme decide. [BFB] * origin/bartgol/homme/cmake-changes: HOMME: removed HOMME_BUILD_LIBS cmake option, which was never used HOMME: handle -mkl flag on a per-target basis HOMME: set compiler flags only in standalone mode 26 January 2022, 22:24:45 UTC
efc3089 Eva Sinha 26 January 2022, 16:40:29 UTC Modifed parameters for miscanthus and switchgrass based on calibration and validation finalized for revised manuscript submitted in GMD https://gmd.copernicus.org/preprints/gmd-2021-244/ 26 January 2022, 21:42:33 UTC
0a64dc6 Jon Wolfe 26 January 2022, 20:25:20 UTC Add support for the oRRS18to6v3 grid to run with JRA forcing 26 January 2022, 20:25:20 UTC
e749872 Gautam Bisht 26 January 2022, 18:39:15 UTC Merge branch 'aldivi/elm/update_fates_harvest' (PR #4024) ELM code (for harvest control and FATES harvest control) has been updated so that ELM input harvest can be passed to FATES to drive FATES harvest code. The ELM namelist variables do_harvest and fdyndat can now be used to drive FATES harvest. The FATES code has not been modified, as it has already been updated for this purpose. Modifications to the harvest read and get year functions were required to ensure that the correct harvest year data are read in. ELM harvest results are unchanged, and FATES harvest matches the input based on secondary forest fraction. Branch run control has been updated to enable branch runs. [non-BFB] only for FATES and BGC cases Conflicts: components/elm/src/main/elm_initializeMod.F90 components/elm/src/main/elmfates_interfaceMod.F90 components/elm/src/main/pftvarcon.F90 26 January 2022, 18:39:15 UTC
22b70a6 Eva Sinha 23 September 2021, 17:29:41 UTC Modifies perennial bioenergy crop harvest 26 January 2022, 17:36:48 UTC
020660a Benjamin R. Hillman 25 January 2022, 20:14:50 UTC Merge branch 'whannah/mmf/add-amip-compset' (#4719) This adds a transient prescribed SST compset (i.e. AMIP) for the C++ MMF. We didn't bother with the fortran MMF because they can't run on GPUs, and therefore aren't good candidates for AMIP experiments. This also only implements the 1-moment microphysics case with prescribed aerosols as the new P3 implementation in the C++ MMF code is still a work in progress. Changes are BFB, but the ERS_Ln9.ne4pg2_ne4pg2.F-MMFXX.eam-mmf_use_VT test in e3sm_integration is replaced with ERS_Ln9.ne4pg2_ne4pg2.F20TR-MMFXX.eam-mmf_use_VT to add test coverage for the new compset, so a new baseline will need to be generated. [BFB] 25 January 2022, 20:14:50 UTC
816388d Oksana Guba 25 January 2022, 18:22:56 UTC Merge branch 'origin/oksanaguba/hommexx/forcing-addon' (PR #4689) Enabling thetaxx as CAM_TARGET. Sorting out some of forcing logic for thetaxx in EAM (partially verified) and SCREAM (not verified and needs some sync with SCREAM repo). thetaxx does not work with threads. Adding an ERS test without threads. [bfb] but a new test. 25 January 2022, 18:22:56 UTC
01ba911 Azamat Mametjanov 24 January 2022, 22:48:27 UTC Merge branch 'azamat/pgi/fix-openacc-tests' (PR #4748) Update PGI compiler runs of E3SM on GPUs: - add mpaso files with expanded OpenACC to Depends.pgigpu.cmake - fix missing CPP macro in threaded PGI runs - update and remove deprecated PGI/NVHPC flags - default ne30.pg2 runs to 2 nodes on Summit and Ascent Fixes E3SM-Project/E3SM#4363 [BFB] 24 January 2022, 22:48:27 UTC
c8866c5 Oksana Guba 24 January 2022, 22:33:15 UTC fix to finalize 24 January 2022, 22:33:15 UTC
91bfee5 Matthew Hoffman 17 November 2021, 22:22:54 UTC Replace actualWhen with saveActualWhen This commit modified the previous commit by removing the actualWhen argument to the MPAS_stream_mgr_read() routine and replacing it with an optional argument saveActualWhen. The actualWhen argument was ambiguous when MPAS_stream_mgr_read was called in a way such that multiple streams were read - the actualWhen value returned came from the final stream read and could possibly be wrong for the other streams that were read. Given the previous commit added the mostRecentAccessTime attribute to the MPAS_stream_list_type type, the actualTime argument was somewhat redundant anyway. Now, instead of being able to have the actualTime returned as an argument, there is the option to have the actual time saved to the new attribute. It can then be retrieved from the stream cursor as needed. The saveActualWhen argument is optional because some streams do not contain xtime and trying to obtain ‘actual when’ in those cases will cause the reading of the stream to fail. Therefore, it is important to be able to not seek this information if possible. If the saveActualWhen argument is not provided to MPAS_stream_mgr_read(), its value defaults to false. This commit also changes the land ice core to stop using actualWhen and replace it with saveActualWhen. Neither the ocean nor seaice cores use actualWhen so no other changes are necessary. 24 January 2022, 17:12:27 UTC
91b290d Matthew Hoffman 17 November 2021, 18:11:42 UTC Add mostRecentAccessTime attribute to streams This commit adds a mostRecentAccessTime attribute to all streams. For input, this corresponds to the time for which input was last read. For output, this corresponds to the time for which output was last written. Note that for output, there is an option to specify an output time that is not the current time; the value used here for mostRecentAccessTime uses the time actually sent to the file. This attribute is initialized to '9999-12-31_23:59:59' and will contain that value prior to the first access. 24 January 2022, 17:12:16 UTC
edfa5d2 Xylar Asay-Davis 23 January 2022, 23:20:55 UTC Initialize Coriolis param in its own subroutine In situations where we do not expand the Earth sphere radius, the Coriolist parameter still needs to get initialized to a realistic value. This merge creates a new subroutine for initializing the Coriolis parameter that is calle regardless of whether the Earth sphere is being expanded or not. 23 January 2022, 23:59:00 UTC
601e512 Oksana Guba 22 January 2022, 23:36:47 UTC fix runs with debug flags, init was missing 22 January 2022, 23:36:47 UTC
2845fa7 Oksana Guba 22 January 2022, 23:36:10 UTC fix preqx build 22 January 2022, 23:36:10 UTC
b010d80 Azamat Mametjanov 22 January 2022, 17:04:36 UTC Update pe-layout 22 January 2022, 17:04:36 UTC
d13164a Luca Bertagna 21 January 2022, 22:56:17 UTC HOMME: removed HOMME_BUILD_LIBS cmake option, which was never used 21 January 2022, 22:56:17 UTC
ddc2f46 Luca Bertagna 21 January 2022, 22:23:06 UTC HOMME: handle -mkl flag on a per-target basis 21 January 2022, 22:23:06 UTC
4cb90a2 Luca Bertagna 21 January 2022, 22:22:09 UTC HOMME: set compiler flags only in standalone mode 21 January 2022, 22:22:09 UTC
3523b2b noel 21 January 2022, 21:21:35 UTC Merge branch E3SM-Project/ndk/machinefiles/PM-module-fix (PR #4742) For Perlmutter, remove a line to load environment module that is no longer needed 21 January 2022, 21:21:35 UTC
e5e8122 Oksana Guba 21 January 2022, 21:16:16 UTC fix preqxx build 21 January 2022, 21:16:16 UTC
0329967 Jon Wolfe 21 January 2022, 20:05:23 UTC Merge branch 'MALI-Dev/develop' (PR #4725) Update MALI version and Greenland mesh This merge improves support for a dynamic Greenland ice sheet in E3SM using MALI. This includes: * Updating the version of Albany used on Cori to allow velocity solver improvements * Update to the GIS 1km initial condition file * Removing unneeded land model warnings These changes have been tested in both IG and BG compsets and run for one year at 5 day timesteps and 5 day glc coupling intervals. Results were examined qualitatively and deemed to be reasonable and realistic. Other features not generally used in E3SM: * Change from using beta as basal friction field to muFriction * Improvements to calving and facemelting parameterizations that allow * for exploration of more sophisticated calving treatment (off in E3SM) * Separates a flood fill routine for general use (BFB under all configurations) * A new namelist option to restore thickness after advection needed for some idealized configurations (not used in E3SM) * Improvements and fixes to the subglacial hydrology model (not * currently used in E3SM) Bug fixes: * Effective viscosity calculation caused a divide by zero in some situations and is now fixed * Fix bug to ensure time-varying forcing is read on initial time * Missing error variables are fixed that led to improper error handling in some cases * Damage was not being advected - that is now fixed (damage evolution is not currently used in E3SM) [NML] [non-BFB] for configurations with MALI 21 January 2022, 20:05:23 UTC
411351f Jon Wolfe 21 January 2022, 20:00:25 UTC Merge branch 'xylar/ocn/init/fix-60-vert-lev-phc' (PR #4729) Fix interface locations for 60-layer PHC grid The previous values were the layer centers, not the layer interfaces for all but the top layer interface. See MPAS-Dev/compass#298 for the bug report, since this issue affects standalone MPAS-Ocean (in init mode) and not E3SM directly. [BFB] 21 January 2022, 20:00:25 UTC
e3e4fb9 Azamat Mametjanov 21 January 2022, 19:49:28 UTC Fix missing CPP macro in threaded PGI runs 21 January 2022, 19:49:28 UTC
53cf0fd Azamat Mametjanov 21 January 2022, 19:45:29 UTC Update and remove deprecated PGI/NVHPC flags on Summit 21 January 2022, 19:45:29 UTC
aaef335 Azamat Mametjanov 21 January 2022, 19:34:50 UTC Run ne30pg2 tests on 4 nodes on Summit+Ascent to avoid OOM errors 21 January 2022, 19:34:50 UTC
c79d2b0 James Foucar 21 January 2022, 19:24:42 UTC Merge branch 'singhbalwinder/machines/compy-typo-fix' into master (PR #4747) Fixes a typo in compy's intel cmake file This typo breaks model compilation in the debug mode on Compy Fixes #4746 [BFB] - Bit-For-Bit * origin/singhbalwinder/machines/compy-typo-fix: Fixes a typo in compy's intel cmake file 21 January 2022, 19:24:42 UTC
805d20f Azamat Mametjanov 21 January 2022, 18:58:56 UTC Update PGI compiler runs of E3SM on GPUs 21 January 2022, 18:58:56 UTC
95a0076 Balwinder Singh 21 January 2022, 01:01:47 UTC Fixes a typo in compy's intel cmake file This typo breaks model compilation in the debug mode on Compy Fixes #4746 [BFB] - Bit-For-Bit 21 January 2022, 01:03:36 UTC
203b02a Matthew Hoffman 20 January 2022, 19:38:43 UTC Merge branch 'matthewhoffman/fix_cori_cmake_again' into develop This PR removes an inadvertent stray character. * matthewhoffman/fix_cori_cmake_again: Remove inadvertent stray character that was in previous PR 20 January 2022, 19:38:43 UTC
48ed1bb Matthew Hoffman 20 January 2022, 19:35:04 UTC Remove inadvertent stray character that was in previous PR 20 January 2022, 19:35:04 UTC
7b97a89 Peter Schwartz 20 January 2022, 18:37:29 UTC Merge remote-tracking branch 'glemieuxfork/fates-spmode-rgknox_cnp_base'(PR #4669) This pull request makes E3SM compatible with FATES API 17.0.0 which enables the use of the FATES satellite phenology mode (aka "sp mode"). While FATES SP mode is operating, the state variables of TLAI, TSAI, HTOP and WTCOL are manipulated (from the surface dataset files) in the native HLM PFT based index space. In this PR, we set up mapping from the FATES IFP space into the HLM P space in elmfates_interfaceMod.F90. Note that the TLAI, TSAI, and HTOP history outputs are updated with a logic check on use_fates_sp to substitute the HLM variable output with the relevant fates sp mode version of these variables, which are identified with the suffix _hist_patch. This PR also introduces FATES no competition mode (use_fates_nocomp), which along with fixed biogeography mode (use_fates_fixed_biogeog), are necessary dependencies for fates sp mode. Fixed biogeography has been enabled in the namelist definition (previously it was set as a stub). The SatellitePhenology procedure has been slightly refactored to represent that it accepts different filters depending on whether or not it is being called for FATES sp mode or ELM sp mode as the FATES sp mode implementation needs to have access to both the active and inactive soil filter. [nonBFB] FATES cases 20 January 2022, 18:37:29 UTC
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