| 86eacbe | Gus Hahn-Powell | 02 March 2019, 06:07:47 UTC | Future-based concurrency model for ReachCLI Try to avoid wasting resources when encountering a hanging paper | 02 March 2019, 06:08:53 UTC |
| 1678be4 | Gus Hahn-Powell | 02 March 2019, 03:46:48 UTC | Use select Translocation rules for Localization | 02 March 2019, 03:46:48 UTC |
| 1d01efa | Gus Hahn-Powell | 02 March 2019, 03:33:44 UTC | Use Translocation rules (Transloc. -> Localiz.) | 02 March 2019, 03:33:44 UTC |
| dffda5c | Gus Hahn-Powell | 02 March 2019, 03:16:28 UTC | No sites | 02 March 2019, 03:16:28 UTC |
| 344099f | Gus Hahn-Powell | 02 March 2019, 03:16:06 UTC | Prune localization triggers | 02 March 2019, 03:16:06 UTC |
| 5c7132d | Gus Hahn-Powell | 02 March 2019, 01:15:06 UTC | Trigger cleanup + theme-only template | 02 March 2019, 01:24:01 UTC |
| a8dab86 | Gus Hahn-Powell | 28 February 2019, 19:33:31 UTC | New event types | 28 February 2019, 19:33:31 UTC |
| 1be3832 | Gus Hahn-Powell | 28 February 2019, 19:29:41 UTC | Merge branch 'eval13' into new-events | 28 February 2019, 19:29:41 UTC |
| 64219eb | Gus Hahn-Powell | 28 February 2019, 19:06:02 UTC | Merge branch 'eval13-trigger-reuse' into new-events | 28 February 2019, 19:06:02 UTC |
| 02c416e | Gus Hahn-Powell | 28 February 2019, 18:56:59 UTC | Use config for BioNLP evaluation | 28 February 2019, 18:56:59 UTC |
| 4e8b644 | Gus Hahn-Powell | 28 February 2019, 06:08:04 UTC | DEBUG is too verbose | 28 February 2019, 06:08:04 UTC |
| 2a60f9d | Gus Hahn-Powell | 28 February 2019, 06:07:01 UTC | Support Gene_expression and Localization | 28 February 2019, 06:07:01 UTC |
| c3906e3 | Gus Hahn-Powell | 28 February 2019, 05:58:16 UTC | Changed log level | 28 February 2019, 05:58:16 UTC |
| 165fd69 | Gus Hahn-Powell | 28 February 2019, 05:25:20 UTC | Settings for BioNLP 2013 rule learning experiment | 28 February 2019, 05:25:20 UTC |
| 382be46 | Gus Hahn-Powell | 28 February 2019, 05:02:44 UTC | Avoid regex | 28 February 2019, 05:02:44 UTC |
| 7291534 | Gus Hahn-Powell | 28 February 2019, 04:23:42 UTC | New events for BioNLP 2013 | 28 February 2019, 04:23:42 UTC |
| 677e8a0 | danebell | 25 June 2018, 21:23:07 UTC | Transcriptions do not have controllers | 25 June 2018, 21:23:07 UTC |
| c06cbf9 | danebell | 21 June 2018, 21:52:25 UTC | PTMs are events in BioNLP-speak | 21 June 2018, 21:52:25 UTC |
| 9510758 | danebell | 20 June 2018, 23:52:13 UTC | Avoid errors when normalizing and evaluating | 20 June 2018, 23:52:13 UTC |
| a9cdbe9 | danebell | 20 June 2018, 21:01:36 UTC | No repeat triggers | 20 June 2018, 21:01:36 UTC |
| c266214 | Gus Hahn-Powell | 20 June 2018, 20:30:00 UTC | Reuse IDs of seen triggers | 20 June 2018, 20:30:00 UTC |
| f544487 | danebell | 20 June 2018, 19:54:09 UTC | Retain causes | 20 June 2018, 19:54:09 UTC |
| 64900cb | danebell | 14 June 2018, 17:03:03 UTC | Parallel eyes | 14 June 2018, 17:03:03 UTC |
| 03d41d2 | danebell | 14 June 2018, 17:02:33 UTC | Treat regulations and bindings like bionlp2013 | 14 June 2018, 17:02:33 UTC |
| a8db245 | Marco Antonio Valenzuela Escárcega | 13 June 2018, 23:34:24 UTC | wip | 13 June 2018, 23:34:24 UTC |
| 587723c | danebell | 13 June 2018, 23:03:12 UTC | Merge branch 'eval13' of github.com:clulab/reach into eval13 | 13 June 2018, 23:03:12 UTC |
| bff8c47 | danebell | 13 June 2018, 23:03:03 UTC | AutoPhosphorylation -> Phosphorylation | 13 June 2018, 23:03:03 UTC |
| b47f4e8 | Gus Hahn-Powell | 13 June 2018, 23:01:30 UTC | Another candidate | 13 June 2018, 23:01:30 UTC |
| b08a98c | danebell | 13 June 2018, 22:56:26 UTC | Merge branch 'eval13' of github.com:clulab/reach into eval13 | 13 June 2018, 22:56:26 UTC |
| 1edf100 | danebell | 13 June 2018, 22:56:04 UTC | Don't recognize named entities | 13 June 2018, 22:56:04 UTC |
| 272ce4a | Marco Antonio Valenzuela Escárcega | 13 June 2018, 22:55:18 UTC | align | 13 June 2018, 22:55:18 UTC |
| 48c7f26 | danebell | 13 June 2018, 22:55:17 UTC | Annotate simple event causes | 13 June 2018, 22:55:17 UTC |
| 4edffaf | Marco Antonio Valenzuela Escárcega | 13 June 2018, 22:37:21 UTC | wip | 13 June 2018, 22:37:21 UTC |
| 40d6a8a | Gus Hahn-Powell | 13 June 2018, 22:34:37 UTC | Refined candidate replacements | 13 June 2018, 22:34:37 UTC |
| ec93e13 | Marco Antonio Valenzuela Escárcega | 13 June 2018, 22:27:29 UTC | wip | 13 June 2018, 22:27:29 UTC |
| 9832389 | Marco Antonio Valenzuela Escárcega | 13 June 2018, 22:23:32 UTC | Merge branch 'eval13' of github.com:clulab/reach into eval13 | 13 June 2018, 22:23:32 UTC |
| aab799f | Marco Antonio Valenzuela Escárcega | 13 June 2018, 22:23:29 UTC | wip | 13 June 2018, 22:23:29 UTC |
| 9ca96d7 | Gus Hahn-Powell | 13 June 2018, 22:22:45 UTC | Better recovery from misaligned tokenization | 13 June 2018, 22:22:45 UTC |
| 35231b2 | Marco Antonio Valenzuela Escárcega | 13 June 2018, 19:31:38 UTC | capitalize | 13 June 2018, 19:31:38 UTC |
| 5dce0bd | Marco Antonio Valenzuela Escárcega | 13 June 2018, 19:00:03 UTC | wip | 13 June 2018, 19:00:03 UTC |
| bca1b07 | Marco Antonio Valenzuela Escárcega | 13 June 2018, 02:21:37 UTC | wip | 13 June 2018, 02:21:37 UTC |
| 0048c7d | Marco Antonio Valenzuela Escárcega | 13 June 2018, 02:10:07 UTC | rename | 13 June 2018, 02:10:07 UTC |
| 64161a8 | danebell | 12 June 2018, 17:59:18 UTC | Untested alignment solution | 12 June 2018, 17:59:18 UTC |
| bc2ff21 | Marco Antonio Valenzuela Escárcega | 11 June 2018, 23:05:36 UTC | wip | 11 June 2018, 23:05:36 UTC |
| 5439223 | Marco Antonio Valenzuela Escárcega | 11 June 2018, 22:57:29 UTC | preparing to dump standoff | 11 June 2018, 22:57:29 UTC |
| 3f1177a | Marco Antonio Valenzuela Escárcega | 11 June 2018, 22:41:58 UTC | wip | 11 June 2018, 22:41:58 UTC |
| 144307f | Marco Antonio Valenzuela Escárcega | 11 June 2018, 22:38:09 UTC | WIP a2 annotations | 11 June 2018, 22:38:09 UTC |
| f1ed3ae | Marco Antonio Valenzuela Escárcega | 11 June 2018, 22:05:28 UTC | todo | 11 June 2018, 22:05:28 UTC |
| cfdc99f | Marco Antonio Valenzuela Escárcega | 11 June 2018, 22:02:24 UTC | reuse reach system | 11 June 2018, 22:03:55 UTC |
| e2e5961 | Marco Antonio Valenzuela Escárcega | 11 June 2018, 21:36:10 UTC | deleted lines | 11 June 2018, 21:36:10 UTC |
| 728c590 | Marco Antonio Valenzuela Escárcega | 11 June 2018, 21:28:46 UTC | started code to process bionlp 2013 | 11 June 2018, 21:28:46 UTC |
| afff677 | Mihai Surdeanu | 30 May 2018, 16:31:24 UTC | Merge pull request #582 from clulab/turnover Added "turnover" as a semantic polarity keyword | 30 May 2018, 16:31:24 UTC |
| 779942c | Mihai Surdeanu | 30 May 2018, 15:56:05 UTC | Added "turnover" as a semantic polarity keyword | 30 May 2018, 15:56:05 UTC |
| 5b9166f | Mihai Surdeanu | 09 May 2018, 22:07:24 UTC | Merge pull request #581 from clulab/noserver Switched default processor to BioNLPProcessor rather than the server.… | 09 May 2018, 22:07:24 UTC |
| b5bcaa1 | Mihai Surdeanu | 09 May 2018, 22:04:54 UTC | Switched default processor to BioNLPProcessor rather than the server. The client/server config remains available. | 09 May 2018, 22:04:54 UTC |
| 25f125f | Mihai Surdeanu | 26 March 2018, 13:23:03 UTC | Update README.md | 26 March 2018, 13:23:03 UTC |
| 5206ee4 | Mihai Surdeanu | 26 February 2018, 22:24:59 UTC | A couple more use cases. | 26 February 2018, 22:24:59 UTC |
| 973514a | Mihai Surdeanu | 12 February 2018, 17:43:13 UTC | Merge pull request #577 from clulab/kwalcock-infiniteloop Handle loops which are produced by BioCluProcessor | 12 February 2018, 17:43:13 UTC |
| 10589d9 | Keith Alcock | 11 February 2018, 20:46:26 UTC | First cut Second cut Third cut | 11 February 2018, 20:46:26 UTC |
| d9c111a | Mihai Surdeanu | 07 February 2018, 15:59:42 UTC | Merge pull request #575 from clulab/kwalcock-windows Find home from Java rather than environment | 07 February 2018, 15:59:42 UTC |
| fa8c19a | Keith Alcock | 07 February 2018, 07:58:21 UTC | Find home from Java rather than environment ConfigFactory fails for environments that don't have ${HOME} defined (e.g., Windows). Use ${user.home} instead. | 07 February 2018, 07:58:21 UTC |
| d99ac0b | Mihai Surdeanu | 05 February 2018, 03:50:54 UTC | Merge pull request #574 from clulab/kwalcock-windows Make this work for Windows by fixing path construction | 05 February 2018, 03:50:54 UTC |
| 1ce8d65 | Keith Alcock | 05 February 2018, 02:27:27 UTC | Fix typo in comment | 05 February 2018, 02:27:27 UTC |
| 2949e3b | Keith Alcock | 05 February 2018, 00:15:13 UTC | Account for paths in Windows by not doing it | 05 February 2018, 00:15:13 UTC |
| d90d0a4 | Tom Hicks | 15 December 2017, 21:58:43 UTC | Update Scala version to 2.11.11 to match Processors.reach branch. Update CHANGES file. | 15 December 2017, 21:59:57 UTC |
| 8b281f5 | Tom Hicks | 07 December 2017, 21:05:02 UTC | Merge pull request #572 from clulab/p360 Update to use released Processors 6.3.0 as new Reach base. | 07 December 2017, 21:05:02 UTC |
| 05e6b18 | Tom Hicks | 07 December 2017, 20:26:56 UTC | Update to use released Processors 6.3.0 as new Reach base. | 07 December 2017, 20:26:56 UTC |
| e9657e0 | Tom Hicks | 27 November 2017, 22:32:48 UTC | Update README and CHANGES files. | 27 November 2017, 22:32:48 UTC |
| 0fd1152 | Mihai Surdeanu | 27 November 2017, 21:19:26 UTC | Merge pull request #568 from clulab/maxNxmlSize Only save nxml docs if no larger than maxSize (default 1MB) | 27 November 2017, 21:19:26 UTC |
| cbc5e66 | Dane Bell | 27 November 2017, 17:00:14 UTC | 1MB is 1E6 not 1E9 | 27 November 2017, 17:00:14 UTC |
| 576d83e | Dane Bell | 27 November 2017, 16:56:19 UTC | Only save nxml docs if no larger than 1MB | 27 November 2017, 16:56:19 UTC |
| 06dcb07 | Mihai Surdeanu | 26 November 2017, 03:13:39 UTC | Merge branch 'master' of https://github.com/clulab/reach | 26 November 2017, 03:13:39 UTC |
| 3519218 | Mihai Surdeanu | 26 November 2017, 03:13:22 UTC | Added option to save maxDocs documents | 26 November 2017, 03:13:22 UTC |
| 7192741 | Tom Hicks | 24 November 2017, 23:59:10 UTC | Merge pull request #566 from clulab/libupdts Coordinate & update library versions across subprojects. | 24 November 2017, 23:59:10 UTC |
| ad16ec6 | Tom Hicks | 24 November 2017, 21:56:42 UTC | Coordinate & update library versions across subprojects. | 24 November 2017, 21:56:42 UTC |
| 255a5e6 | Tom Hicks | 22 November 2017, 20:15:05 UTC | Merge pull request #565 from clulab/txt Fix file input pattern to include "txt". | 22 November 2017, 20:15:05 UTC |
| 13475e6 | Tom Hicks | 22 November 2017, 19:22:32 UTC | Fix file input pattern to include "txt". | 22 November 2017, 19:22:32 UTC |
| aaf7451 | Tom Hicks | 16 November 2017, 03:50:32 UTC | Setting version to 1.4.1-SNAPSHOT | 16 November 2017, 03:50:32 UTC |
| 3b92c61 | Tom Hicks | 16 November 2017, 03:50:31 UTC | Setting version to 1.4.0 | 16 November 2017, 03:50:31 UTC |
| ce80e0e | Tom Hicks | 16 November 2017, 03:33:42 UTC | Merge pull request #561 from clulab/comv Test PR: changing Travis to run script | 16 November 2017, 03:33:42 UTC |
| 2e5385f | marcovzla | 16 November 2017, 03:14:43 UTC | Update README.md | 16 November 2017, 03:14:43 UTC |
| 2f9b3e8 | Tom Hicks | 16 November 2017, 02:39:38 UTC | Update Reach to use Processors 6.1.5 release. Update CHANGES file. | 16 November 2017, 02:39:38 UTC |
| 3f99d68 | Tom Hicks | 15 November 2017, 16:54:10 UTC | Specify path to script. | 15 November 2017, 16:54:10 UTC |
| 4c267d1 | Tom Hicks | 15 November 2017, 16:33:22 UTC | Attempt to switch what Travis runs for the tests on checkin. | 15 November 2017, 16:33:22 UTC |
| 7cdfa24 | Tom Hicks | 15 November 2017, 02:44:07 UTC | Update tests for processing annotators. | 15 November 2017, 02:44:07 UTC |
| 20df562 | Tom Hicks | 15 November 2017, 02:43:46 UTC | Refactor: change processor client to processor annotator. | 15 November 2017, 02:43:46 UTC |
| 853d71c | Tom Hicks | 15 November 2017, 02:41:15 UTC | Add processor annotator selection, update/reorganize application.conf. | 15 November 2017, 02:41:15 UTC |
| 13efb7c | Tom Hicks | 13 November 2017, 22:01:37 UTC | Update scripts to use remote server shutdown app to cleanup. | 13 November 2017, 22:01:37 UTC |
| 7d43d52 | Tom Hicks | 13 November 2017, 18:40:29 UTC | Update for refactoring of shutdown methods. | 13 November 2017, 18:40:29 UTC |
| ad10569 | Tom Hicks | 11 November 2017, 08:33:00 UTC | Update test for serialization changes. | 11 November 2017, 08:33:00 UTC |
| fa31f73 | Tom Hicks | 11 November 2017, 07:27:58 UTC | Shutdown the client and server when finished. New shells for running top-level apps. Shutdown pass-through in paper reader. Update for reach system rename in paper reader. Other cleanups. | 11 November 2017, 07:27:58 UTC |
| ea69142 | Tom Hicks | 10 November 2017, 01:58:20 UTC | Update scala logging to match Processors. | 10 November 2017, 01:58:20 UTC |
| 9c8966e | Mihai Surdeanu | 08 November 2017, 20:58:40 UTC | Added UA license | 08 November 2017, 20:58:40 UTC |
| 54b8449 | Tom Hicks | 01 November 2017, 01:28:50 UTC | Update for client/server package/class renames. | 01 November 2017, 01:28:50 UTC |
| 7d08a91 | Tom Hicks | 01 November 2017, 01:22:43 UTC | Update semi-qualified refs to scala.io.Source causing new errors. | 01 November 2017, 01:22:43 UTC |
| 9c15a41 | Tom Hicks | 18 October 2017, 21:01:11 UTC | Merge latest 'master' into comv. | 18 October 2017, 21:01:11 UTC |
| 1b468fe | Tom Hicks | 18 October 2017, 20:58:25 UTC | Merge pull request #558 from clulab/iss554 Issue #554: update Reach for missing file types. | 18 October 2017, 20:58:25 UTC |
| 67844a5 | Tom Hicks | 18 October 2017, 19:33:44 UTC | Issue #554: update Reach for missing file types. | 18 October 2017, 19:33:44 UTC |
| 0d8db86 | Tom Hicks | 18 October 2017, 18:43:54 UTC | WIP: move core client, test, and config to Processors. | 18 October 2017, 18:43:54 UTC |
| 4d93419 | Mihai Surdeanu | 10 October 2017, 19:13:31 UTC | Merge pull request #555 from bgyori/cli_txt Add txt to regexp for finding files for reading in ReachCLI | 10 October 2017, 19:13:31 UTC |
