https://github.com/E3SM-Project/E3SM
- HEAD
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Revision | Author | Date | Message | Commit Date |
---|---|---|---|---|
05ebf20 | Erika Roesler | 25 June 2019, 19:30:03 UTC | Changes lines for smoothtopo.job | 25 June 2019, 19:30:03 UTC |
68462da | Mark Taylor | 16 June 2019, 19:19:56 UTC | update job script for Anvil slurm | 16 June 2019, 19:19:56 UTC |
49fe239 | Mark Taylor | 16 June 2019, 19:11:22 UTC | add test cases for nu_div and nu_top subcycling options also: add SHA hash to log files for checkE.sh theta model: use same nu_div scaling for RRM and cubed-sphere | 16 June 2019, 19:13:17 UTC |
2da93bf | Mark Taylor | 24 May 2019, 17:23:39 UTC | update README and README.cmake | 24 May 2019, 17:23:39 UTC |
b83b91c | Mark Taylor | 24 May 2019, 17:01:04 UTC | add script to plot energy convergence test initial condition | 24 May 2019, 17:01:04 UTC |
7b36c2b | Mark Taylor | 23 May 2019, 04:07:02 UTC | fix bug in nu_top, revert back to old formula | 23 May 2019, 04:07:02 UTC |
46cd3e6 | Mark Taylor | 23 May 2019, 01:06:12 UTC | Merge remote-tracking branch 'mt5555/nutop' into nutop * mt5555/nutop: add hv_s_tom to eam namelist | 23 May 2019, 01:06:12 UTC |
eb83c1c | Mark Taylor | 23 May 2019, 01:03:38 UTC | tweak NCL script | 23 May 2019, 01:03:38 UTC |
359923d | Oksana Guba | 22 May 2019, 23:01:47 UTC | add hv_s_tom to eam namelist | 22 May 2019, 23:01:47 UTC |
78ce8e5 | Mark Taylor | 22 May 2019, 21:53:17 UTC | add option to run TOM timesplit or combined with hypervis | 22 May 2019, 21:53:17 UTC |
3eb87cd | Mark Taylor | 21 May 2019, 18:22:25 UTC | bugfix in TOM dissipation pack/unpack | 21 May 2019, 18:22:25 UTC |
fd7d7d2 | Mark Taylor | 21 May 2019, 16:55:49 UTC | timesplit TOM diffusion and hyperviscosity | 21 May 2019, 16:55:49 UTC |
0ff401b | Mark Taylor | 20 May 2019, 01:41:30 UTC | add scripts and namelists used for formulation paper energy convergence | 20 May 2019, 01:41:30 UTC |
ede977b | Mark Taylor | 16 May 2019, 12:20:43 UTC | introduce global TREF=288 variable, use it in all ref states | 16 May 2019, 12:20:43 UTC |
8ca4f81 | Mark Taylor | 16 May 2019, 12:19:52 UTC | correct CFL diagnostic for theta-l model nu_top | 16 May 2019, 12:19:52 UTC |
5b78241 | Mark Taylor | 16 May 2019, 12:17:45 UTC | bugfix: tensorHV was used by toposmoothing before final version was computed. Also call model_init2() before CFL so we can print CFL for nu_top code | 16 May 2019, 12:17:45 UTC |
2d4cc85 | Mark Taylor | 16 May 2019, 12:13:56 UTC | bugfix in nmax calcluation when restartfreq=0 | 16 May 2019, 12:13:56 UTC |
66d0a38 | Mark Taylor | 16 May 2019, 12:10:43 UTC | fix mod(*,0) segfault on restart when restartfreq=0 | 16 May 2019, 12:10:43 UTC |
5ebf0ed | Mark Taylor | 13 May 2019, 16:35:48 UTC | adjust TOM ramp to start at 10*ptop Based on what is used in CAM-SE from P. Lauritzen | 13 May 2019, 16:35:48 UTC |
0d546cd | Mark Taylor | 13 May 2019, 14:35:26 UTC | bugfix in dpdiss_ave for hyperviscosity, apply nu_top to theta*dp | 13 May 2019, 14:35:26 UTC |
a43c4a8 | Mark Taylor | 13 May 2019, 14:34:40 UTC | update theta-l TOM dissipation to better match FV | 13 May 2019, 14:34:40 UTC |
2740e21 | Mark Taylor | 13 May 2019, 02:13:21 UTC | update for theta-l nu_top CFL diagnostic | 13 May 2019, 02:13:21 UTC |
a8d8c14 | Mark Taylor | 12 May 2019, 22:00:54 UTC | adding option (commented out) to use older CAM3 TOM dissipation | 12 May 2019, 22:00:54 UTC |
78ca866 | Mark Taylor | 12 May 2019, 21:52:48 UTC | fix bug for nu_div scaling when nu_div <> nu | 12 May 2019, 21:52:48 UTC |
52df041 | Mark Taylor | 12 May 2019, 21:50:50 UTC | fix bugs in viscious CFL output | 12 May 2019, 21:50:50 UTC |
2bfc51a | Gautam Bisht | 10 May 2019, 17:28:35 UTC | Merge branch 'jinyuntang/lnd/fix_float_error' (PR #2886) Fixed a number of initialization issues related to the logical switch of crop model and dynamic land use. Fixes #2832 [BFB] | 10 May 2019, 17:28:35 UTC |
6c1de58 | James Foucar | 09 May 2019, 18:52:52 UTC | Merge branch 'luca/homme_cmake_subdir' (PR #2831) This PR allows to build HOMME with cmake from within another cmake project. This is needed by scream (in fact, this has already be done in the scream fork, but I want it to get in E3SM as well, so I can take care of merging E3SM master into the scream fork, taking care of the homme conflicts). The logic is simple: if there's a cmake project defined already, do not define it, do not build execs/tests, just let the host cmake project drive everything. This PR should have zero impact on standalone homme cmake build, and zero impact on cime-base builds. Note: I added a bunch of reviewers that have to do with any combination of homme, cime, and cmake. [BFB] * luca/homme_cmake_subdir: Homme: modifying cmake logic, to allow inclusion of homme with add_subdirectory | 09 May 2019, 18:52:52 UTC |
6a9553a | noel | 09 May 2019, 16:58:03 UTC | Merge E3SM-Project/ndk/machinefiles/cori-knl-cflag-math (PR #2878) Fix the calculation to give the best cflag value for cori-knl | 09 May 2019, 16:58:03 UTC |
2b67e3b | James Foucar | 09 May 2019, 16:32:06 UTC | Update CIME to ESMCI cime5.8.2-2 (#2908) Update CIME to ESMCI cime5.8.2-2 Squash merge of jgfouca/branch-for-to-acme-2019-05-06 Features * Nuopc update * nldas_forcing_v2: This is a regional, 0.125 degree data set over the U.S., for use in forcing CTSM. * Change DATM_CLMNCEP_YR_ALIGN for present-day compsets: Make DATM_CLMNCEP_YR_ALIGN match DATM_CLMNCEP_YR_START. This will make the model year align with the forcing year. For example, if RUN_STARTDATE is set to 2000-01-01, then the model will use year-2000 atmospheric forcing data in the first year, etc. non-BFB for any present-day compsets using datm (mostly I-cases and G-cases). Bug fix: * Fixes to NAG flags in scripts/Tools/Makefile [non-BFB] (datm) | 09 May 2019, 16:32:06 UTC |
143b62a | Wuyin Lin | 08 May 2019, 17:12:16 UTC | Merge wlin/atm/trim_perl_config (PR #2888) Trim CAM's perl based configure script by removing unused or unlikely used codes in preparation for migration to using Python and CMake. The following codes are removed cice setup, as it is now controlled by CIME. codes to configure for tests. Control block in the main program for configuring test and check required modules and libraries Subroutines supporting the setup for the test that are invoked by the main programs. This include get_gmake, write_tests_filepath, check_fc, check_netcdf, check_mpi, check_esmf, run_test [BFB] | 08 May 2019, 17:12:16 UTC |
098c852 | Junqi Yin | 07 May 2019, 16:57:43 UTC | Merge branch 'bishtgautam/lnd/update-land-ic' (PR #2893) Updates land initial conditions for ne0np4 Updates the land initial condition for ne0np4 resolution. The new initial conditions contain additional topounit dimension. Fixes #2890 Fixes #2891 [BFB] | 07 May 2019, 16:57:43 UTC |
4b1a49f | Jon Wolfe | 07 May 2019, 14:44:34 UTC | Merge branch 'mark-petersen/ocean/addTimeSeriesMaxMin' (PR #2884) Add ocean ability to output max and min quantities in timeSeriesMonthly This PR adds the ability to output maximum and minimum observed quantities for each month. It utilizes the current timeseries AM functionality. [BFB] [NML] | 07 May 2019, 14:44:34 UTC |
68297f4 | Mark Taylor | 07 May 2019, 12:59:37 UTC | Merge branch 'mt5555/refstates' (PR #2907) switch to analytic formula for hypervis dp_ref [BFB] except for HOMME tests | 07 May 2019, 12:59:37 UTC |
60a10b7 | Mark Taylor | 07 May 2019, 12:56:31 UTC | Merge ranch 'origin/asteyer/imex_methods' (PR #2801) update imex schemes with new versions with improved stability [BFB] | 07 May 2019, 12:56:31 UTC |
fbb8b81 | Mark Taylor | 06 May 2019, 16:43:12 UTC | Merge branch 'mt5555/supercell-x1' (PR #2906) several minor changes implemented during high-res testing added I/O output options updated superscel namelists precl output bug fix. better Newton failure diagnostics clean up EOS naming convention [BFB] | 06 May 2019, 16:43:12 UTC |
3424e22 | Mark Taylor | 05 May 2019, 14:20:34 UTC | Merge remote-tracking branch 'origin/master' into supercell-x1 supercell-x1 changed the EOS interface, while on master new routines were added which used the old interface. to address this, merging master into supercell-x1 so new routines can be updated to the new interface on the branch | 05 May 2019, 14:20:34 UTC |
9ea7580 | Mark Taylor | 05 May 2019, 13:44:12 UTC | tweaks to prevert merge conflicts with master | 05 May 2019, 13:44:12 UTC |
7df269e | Mark Taylor | 04 May 2019, 22:54:14 UTC | added omega500 and omega850 to HS diagnostics | 04 May 2019, 22:54:14 UTC |
74855c0 | Mark Taylor | 04 May 2019, 21:49:39 UTC | fix typo | 04 May 2019, 21:49:39 UTC |
dc700f9 | Jinyun Tang | 04 May 2019, 21:21:42 UTC | relocate col_plant_pdemand_vr from nf to pf Now col_plant_pdemand_vr is contained as a variable in the type of phosphorus flux. Also removed some unnecessary varaibles added in last commit, and added back plant_pdemand_vr into the related value reset subroutine. Code passed the test suite e3sm_developer. | 04 May 2019, 21:21:42 UTC |
bc39fa4 | Mark Taylor | 04 May 2019, 19:58:51 UTC | switch to analytic formula for hypervis dp_ref | 04 May 2019, 19:58:51 UTC |
a24d05f | Mark Taylor | 04 May 2019, 19:19:43 UTC | cleaned up EOS interface | 04 May 2019, 19:19:43 UTC |
0cd0685 | Junqi Yin | 03 May 2019, 18:08:07 UTC | Merge branch 'bishtgautam/lnd/fixes-for-emi' (PR #2859) Fixes the definition type in EMI Changes definition of few member variables from type to class. Fixes #2855 [BFB] | 03 May 2019, 18:08:07 UTC |
b3ebebb | Jon Wolfe | 02 May 2019, 19:52:20 UTC | Fix default settings for new variables from the ones in Registry | 02 May 2019, 19:52:20 UTC |
b02412d | James Foucar | 02 May 2019, 19:38:12 UTC | Merge branch 'jgfouca/cime/wget_no_cert' into master (PR #2901) Missed a spot in wget that needed no-check-cert [BFB] * jgfouca/cime/wget_no_cert: Missed a spot in wget that needed no-check-cert change anvil nodename regex for centos6 nodes Run in acme-centos6 partition on Anvil add netcdf fflags Split NETCDF_PATH into C and Fortran paths Update Anvil to Slurm and SoftEnv built on CentOS6 | 02 May 2019, 19:41:47 UTC |
bfdf406 | James Foucar | 02 May 2019, 19:37:03 UTC | Missed a spot in wget that needed no-check-cert [BFB] | 02 May 2019, 19:37:03 UTC |
b117120 | James Foucar | 02 May 2019, 19:19:07 UTC | C++/Kokkos: Refine a few build pieces. (PR #2894) 1. Add KOKOS_CXXFLAGS to CXXFLAGS. 2. Add CPPDEFS to CXXFLAGS. 3. Do not add CFLAGS to CXXFLAGS. 4. For default build (i.e., no KOKKOS_OPTIONS provided), build Kokkos --with-openmp only if case.get_build_threaded(). [BFB] | 02 May 2019, 19:19:07 UTC |
6140487 | Junqi Yin | 01 May 2019, 21:26:40 UTC | Merge branch 'bishtgautam/lnd/add-future-luh2-dataset' (PR #2857) Adds support for LUH2 dataset Replaces the support of LUH1 dataset within the land mksrufdata tool by LUH2 dataset for historical (1850-2014) and future (2015-2100) time period. The LUH2 dataset for the future corresponds to SSP5-RCP8.5 scenario. [BFB] | 01 May 2019, 21:26:40 UTC |
492c434 | Mark Taylor | 01 May 2019, 20:01:40 UTC | better dp3d refstate for hypervis | 01 May 2019, 20:01:40 UTC |
8c7b2ac | Jon Wolfe | 01 May 2019, 19:21:57 UTC | Add missing groups to build-namelist script | 01 May 2019, 19:21:57 UTC |
45db9a9 | Jon Wolfe | 30 April 2019, 21:01:27 UTC | Add new streams to script that builds the streams.ocean file | 30 April 2019, 21:01:27 UTC |
db95f89 | Andrew M. Bradley | 30 April 2019, 19:06:46 UTC | C++/Kokkos: Refine a few build pieces. 1. Add KOKOS_CXXFLAGS to CXXFLAGS. 2. Add CPPDEFS to CXXFLAGS. 3. Do not add CFLAGS to CXXFLAGS. 4. For default build (i.e., no KOKKOS_OPTIONS provided), build Kokkos --with-openmp only if case.get_build_threaded(). [BFB] | 30 April 2019, 19:08:09 UTC |
b5aaa6b | Gautam Bisht | 30 April 2019, 18:41:26 UTC | Merge branch 'singhbalwinder/clm/missing-isnan-use' (PR #2863) Includes the missing isnan via use statement Fixes #2838 [BFB] | 30 April 2019, 18:41:26 UTC |
5999763 | Balwinder Singh | 30 April 2019, 18:03:54 UTC | Merge branch 'brhillman/atm/make-rrtmgp-submodule'(PR #2805) … Make RRTMGP a submodule Make external RRTMGP code a submodule. This will allow us to more easily pull in changes to the RRTMGP code as that codebase continues to evolve. This code is developed external to E3SM, so making this a submodule to track the RRTMGP repository seems to make the most sense. This PR also pulls in the latest version of RRTMGP, which is NOT bit-for-bit with the version in master currently. Non-RRTMGP test cases should still be BFB (the only baseline comparison fail should be that for ERS_Ld5.ne4_ne4.FC5AV1C-L.cam-rrtmgp in the e3sm_atm_integration suite). This appears to be due to small differences in the values used for physical constants within the RRTMGP code, as well as a change in how the dry column molecular amounts are calculated within the RRTMGP code. These affect on the solution is small, however. Shown here are net shortwave and longwave clear-sky fluxes at the top of the atmosphere for two simulations at ne4np4 resolution, one with current master and one with these changes (with -rad rrtmgp selected for both): Grey lines indicate the column difference, with a separate scale indicated on the right axis. Note that the differences are on the order of a few $W/m^2$, while the magnitude of the column values are hundreds of W/m^2. Slight changes are needed in the E3SM code that interfaces with RRTMGP to accommodate a change in data structures in RRTMGP (ty_gas_optics is now abstract, and we access via ty_gas_optics _rrtmgp). This change is made in radiation.F90 and in cam_optics.F90. Fixes #2798 [NBFB] * brhillman/atm/make-rrtmgp-submodule: Change space to tab for consistency Set RRTMGP submodule to track master Edits for new RRTMGP interface Add RRTMGP external repo as a submodule Remove existing RRTMGP external code | 30 April 2019, 18:03:54 UTC |
248224e | Gautam Bisht | 30 April 2019, 17:39:45 UTC | Updates land initial conditions for ne0np4 Updates the land initial condition for ne0np4 resolution. The new initial conditions contain additional `topounit` dimension. Fixes #2890 Fixes #2891 [BFB] | 30 April 2019, 17:43:27 UTC |
d611157 | Jason Sarich | 30 April 2019, 17:03:02 UTC | change anvil nodename regex for centos6 nodes | 30 April 2019, 17:03:02 UTC |
fb4ccf0 | Jon Wolfe | 30 April 2019, 17:00:51 UTC | Update mpas-ocean bld scripts to match Registry changes | 30 April 2019, 17:00:51 UTC |
9bf89b0 | Azamat Mametjanov | 29 April 2019, 23:06:12 UTC | Run in acme-centos6 partition on Anvil | 29 April 2019, 23:06:12 UTC |
141aa0b | Wuyin Lin | 29 April 2019, 22:02:24 UTC | Clean up a config reference to cice_cppdef | 29 April 2019, 22:02:24 UTC |
ab52999 | Jason Sarich | 29 April 2019, 21:46:49 UTC | add netcdf fflags | 29 April 2019, 21:46:49 UTC |
e4b8cd8 | Azamat Mametjanov | 29 April 2019, 20:47:56 UTC | Split NETCDF_PATH into C and Fortran paths | 29 April 2019, 20:47:56 UTC |
fe44e19 | Wuyin Lin | 29 April 2019, 20:39:33 UTC | Trim cam's perl configure script step 1 Trim CAM's perl based configure script by removing unused codes in preparation for migration to using Python and CMake. In this step, the following codes are remove 1. cice setup, as it is now controlled by CIME. 2. codes to configure for tests. - Control block in the main program for configuring test and check required modules and libraries - Subroutines supporting the setup for the test that are invoked by the main programs. This include get_gmake, write_tests_filepath, check_fc, check_netcdf, check_mpi, check_esmf, run_test [BFB] | 29 April 2019, 20:39:33 UTC |
1327c41 | Azamat Mametjanov | 29 April 2019, 19:32:36 UTC | Update Anvil to Slurm and SoftEnv built on CentOS6 | 29 April 2019, 19:32:36 UTC |
e952a6c | Jason Sarich | 29 April 2019, 15:21:30 UTC | Merge branch 'worleyph/cime/anvil_perfarch_update' (PR #2846) Anvil recently moved from PBS to SLURM. This requires changes to syslog.anvil and provenance.py to replace calls to PBS inquiry functions with calls to SLURM inquiry functions, to document job provenance and to capture job progress tracking data. [BFB] | 29 April 2019, 15:21:30 UTC |
cd76dfc | Mark Taylor | 27 April 2019, 15:02:31 UTC | Merge branch 'mt5555/homme_arkode_interface_update' (PR #2881) merge of the HOMME-ARKode interface. This should be BFB in that it only modifies code within an ifdef block that is disabled by default. [BFB] | 27 April 2019, 15:02:31 UTC |
42f0335 | Mark Taylor | 27 April 2019, 15:01:36 UTC | Merge branch 'mt5555/nggps-nh-update' (PR #2874) updates to namelists used for some benchmarks. no impact on any E3SM tests. [BFB] | 27 April 2019, 15:01:36 UTC |
96b1746 | Mark Taylor | 27 April 2019, 15:00:32 UTC | Merge branch 'origin/oksanaguba/eam/restart-thetal-nh' (PR #2775) Adds restart to runs with cam_target=theta-l with hydrostatic_mode=.false. . Required reading/writing 2 dynamic variables on interfaces, w_i and phinh_i . [BFB] | 27 April 2019, 15:00:32 UTC |
8ba2638 | Mark Taylor | 27 April 2019, 14:59:50 UTC | Merge branch 'origin/oksanaguba/eam/restart-thetal' (PR #2885) Fixing restart for theta-l EAM target. The conversation including testing is in PR #2763 (which was opened to wrong base branch). * origin/oksanaguba/eam/restart-thetal: inserted if statements for restart, writing vtheta instead of t for thetal. | 27 April 2019, 14:59:50 UTC |
d24815b | Mark Taylor | 26 April 2019, 22:22:02 UTC | jobscript tweaks for skybridge | 26 April 2019, 22:22:02 UTC |
405bf15 | Mark Taylor | 26 April 2019, 20:52:56 UTC | jobscript: compute correct number of cores per node | 26 April 2019, 20:52:56 UTC |
c7c18dc | Jinyun Tang | 26 April 2019, 20:19:22 UTC | fix an initialization bug for dynamic landuse In computing the seed amount, the variable my_pool_seed was not initalized for non-veg soil. This fix corrected the failure of ERS_D_PMx1.f19_f19.I20TRCLM45CN.cori-knl_intel.20190425_154849_q0cs0. | 26 April 2019, 20:19:22 UTC |
d96356d | Mark Taylor | 26 April 2019, 15:56:33 UTC | Merge branch nonhydro/homme/integration2 (PR #2729) This PR uses one subroutine applycamforcing_tracers() to adjust tracers and to convert dynamics forcing (the crucial one is theta_dp forcing). The idea is that tracers update and recompute of forcing for theta_dp should be done at the same time. Now both stepon and standalone homme call this routine. To make it bfb with ftype2 we use a flag to interpret FQ as tendencies or adjustment. Restart routines have calls to endrun() to prevent restart in theta-l. This is not the best solution since restart is called by default at the end of the run, so, model with cam_target=theta-l crashes at the end if restart date is not pushed further. Restart for theta-l will be fixed later. Also, ftype3 code is removed. Theta-c code (which is not tested) is now broken because code in set_thermostate and tests_finalize is disabled. [BFB] | 26 April 2019, 15:56:33 UTC |
e5fe543 | Mark Taylor | 26 April 2019, 15:52:21 UTC | tweak run script for updated Anvil system | 26 April 2019, 15:52:21 UTC |
b8ea153 | mark-petersen | 26 April 2019, 14:27:19 UTC | Update mpas-source for addTimeSeriesMaxMin | 26 April 2019, 14:27:19 UTC |
8e0209f | Jinyun Tang | 25 April 2019, 21:26:05 UTC | fixe the float invalid error When DEBUG=TRUE, the code crashes with float invalid error. It appeared that a few variables were not initialized with computable value when crop mode is off. Now these varaibles are alaways initialized, which fixes the error. No answer change is expected. | 25 April 2019, 21:26:05 UTC |
bd399bd | Jon Wolfe | 25 April 2019, 14:33:23 UTC | Merge branch 'mark-petersen/mpas/makefile_update' (PR #2843) MPAS Makefile and framework update This PR updates the MPAS Makefile and the MPAS framework. The changes to the MPAS framework include: * rename Makefile.in.ACME to Makefile.in.E3SM (MPAS-Dev/MPAS-Model #195); * change Makefile.in.E3SM to standard CESM formatting with TRUE in caps (MPAS-Dev/MPAS-Model #191i, Issue #2879); * add -Uvector to Makefile.in.E3SM to ignore the word 'vector' in comments when using GEN_F90=TRUE (MPAS-Dev/MPAS-Model #200, Issue #2725); * fix memory leak due to double allocate in RK4 time stepping, which is not used in E3SM runs (MPAS-Dev/MPAS-Model #185); * changes to atmosphere directories are not used by E3SM; * COMPASS testing updates, not used by E3SM, including python 3 updates; and * fix typos that cause warnings on some compilers (MPAS-Dev/MPAS-Model #196, #197, #198, #199) Necessary E3SM changes to support the new Makefile: * change calls from Makefile.in.ACME to Makefile.in.E3SM; and * additional renaming of ACME to E3SM in comments, xml descriptions, and strings Fixes #2725 Fixes #2879 [BFB] | 25 April 2019, 14:33:23 UTC |
746db90 | Chris Vogl | 24 April 2019, 23:16:36 UTC | This will fix a naming mismatch that occurred during the original merge of the HOMME-ARKode interface. This should be BFB in that it only modifies code within an ifdef block that is disabled by default. | 24 April 2019, 23:16:36 UTC |
0b38cd3 | mark-petersen | 09 April 2019, 17:46:27 UTC | Change ACME to E3SM in other places. Update submodule | 24 April 2019, 19:38:32 UTC |
c72cbaf | mark-petersen | 09 April 2019, 13:58:57 UTC | Change ACME to E3SM in Makefile call name | 24 April 2019, 18:35:30 UTC |
ada6b5f | Aaron Donahue | 24 April 2019, 17:11:42 UTC | Merge branch 'aarondonahue/cime/apr19_lc_updates' (PR #2851) Changes the config files in CIME to reflect recent changes in Livermore Computing resources: Update syrah and quartz machine config entries to explicitly load mvapich2/2.2 which is the only mvapich version on LC that grants access to pnetcdf/1.9.0. These changes reflect a change in the default module loads on LC machines. In addition, there is a change to the run_script to purge all mention of the machines cab and sierra (which have been taken down) and to add a warning message to the build section warning of the sensitivity of CIME to double slashes (//) in the case directory path. [BFB] - Bit-For-Bit | 24 April 2019, 17:11:42 UTC |
b594205 | James Foucar | 24 April 2019, 16:47:09 UTC | Merge branch 'wlin/atm/cosp_radar_dep' (PR #2835) Resolving random compilation failure due to missing cosp module Nightly test of cosplite_nhtfrq5 on sandiatoss3 failed from time to time complaining error in opening a compiled module file during compilation of quickbeam/radar_simulator.f90. The missing module is scale_LUTs_io. It turns out there was no rule explicitly setting the object of radar_simulator.o to be dependent of module scale_LUTs_io, which may cause the compilation of radar_simultor.f90 to be started before scale_LUTs_io.f90 is compiled, hence unable to open the required module. This update explicitly enforces it in cam/src/physics/cosp/Makefile.cospinline.in [BFB] * origin/wlin/atm/cosp_radar_dep: Resolving random compilation failure due to missing cosp module | 24 April 2019, 16:47:09 UTC |
716b084 | James Foucar | 24 April 2019, 16:45:31 UTC | Merge branch 'jgfouca/cime/minor_compiler_fixes' (PR #2864) Minor build fixes Need consistent case for USE_CXX in Makefile (Restores cxxlib flag for PIO2). Intel should not add qopenmp unless compile_threaded is TRUE. Fixes #2858 [BFB] * origin/jgfouca/cime/minor_compiler_fixes: Minor build fixes | 24 April 2019, 16:45:44 UTC |
4e519a8 | James Foucar | 24 April 2019, 16:43:50 UTC | Update CIME to ESMCI cime5.8.2 (#2876) Update CIME to ESMCI cime5.8.2 Squash merge of jgfouca/branch-for-to-acme-2019-04-22 Features: * Adds a stub for Integrated Assessment Component (IAC) * Allow specific tests to ignore field list differences Bug fixes: * Minor [BFB] | 24 April 2019, 16:43:50 UTC |
26aa1d6 | noel | 23 April 2019, 21:06:42 UTC | Fix the calculation to give the best cflag value (the integer passed to srun via -c) for KNL. [bfb] | 23 April 2019, 21:06:42 UTC |
8eb6019 | Balwinder Singh | 23 April 2019, 15:07:47 UTC | Merge branch 'kaizhangpnl/atm/ieflx_cleanup2' (PR #2730) remove l_ieflx_fix removed l_ieflx_fix in - components/cam/bld/namelist_files/namelist_definition.xml - components/cam/src/physics/cam/phys_control.F90 - use_cases namelist files (under components/cam/bld/... ...namelist_files/use_cases) [BFB] Fixes #2731 * kaizhangpnl/atm/ieflx_cleanup2: delete l_ieflx_fix in use_cases namelist files remove l_ieflx_fix | 23 April 2019, 15:07:47 UTC |
9534408 | asteyer | 22 April 2019, 22:48:22 UTC | 1 1 2 | 22 April 2019, 22:48:22 UTC |
662009d | asteyer | 22 April 2019, 20:47:09 UTC | adding the imkg232 method for Mark's PR | 22 April 2019, 20:47:09 UTC |
5cdf492 | jayeshkrishna | 22 April 2019, 17:24:03 UTC | Merge pull request #2856 from E3SM-Project/jayeshkrishna/summit_module_fixes Upgrading the summit cmake, essl and MPI modules. Also updating the ROMIO version to prevent OOM errors. Fixes #2847 [BFB] | 22 April 2019, 17:24:03 UTC |
02b293b | Junqi Yin | 22 April 2019, 17:20:30 UTC | Merge branch 'bishtgautam/lnd/fixes-for-ptm' (PR #2806) Fixes the PETSc-based thermal model in ELM Updates the MPP submodule to fix the PETSc-based thermal model [BFB] | 22 April 2019, 17:20:30 UTC |
b57d606 | Jayesh Krishna | 22 April 2019, 16:36:54 UTC | Setting summit env for OOM errors OLCF recommends setting "OMPI_MCA_io" env variable to "romio314" to prevent out of memory issues with the code. In our testing we have found that setting this env gets rid of OOM errors with certain E3SM simulations (ECP simulation runs). However also note that setting this environment variable reduces the performance of parallel HDF5 (when using NetCDF4P PIO iotype to write data). See Issue #2856 | 22 April 2019, 16:36:54 UTC |
2b5cd8e | Gautam Bisht | 22 April 2019, 14:23:25 UTC | Merge branch 'jinyuntang/lnd/hr_fix' (PR #2722) Now hr_col is updated at the correct location. The change is smaller than round off error after a 300 years simulations. Fixes #2717 [non-BFB] | 22 April 2019, 14:23:25 UTC |
1b820ac | Mark Taylor | 21 April 2019, 22:14:06 UTC | tweak cmake for upgraded anvil | 21 April 2019, 22:14:06 UTC |
8b1952a | Mark Taylor | 21 April 2019, 20:51:12 UTC | fix comment in namelist | 21 April 2019, 20:51:12 UTC |
87c4107 | Mark Taylor | 05 April 2019, 16:02:51 UTC | fix bug with native grid precl output | 21 April 2019, 15:57:07 UTC |
472d88b | Mark Taylor | 25 February 2019, 20:55:29 UTC | need to run cmake when rebuilding | 21 April 2019, 15:57:07 UTC |
9b8a9a7 | Mark Taylor | 23 February 2019, 05:00:22 UTC | use rearth from namelist, instead of hardcoding X=120 | 21 April 2019, 15:57:07 UTC |
b636a03 | Mark Taylor | 19 February 2019, 19:31:36 UTC | fix output of 'geo' for native grid | 21 April 2019, 15:57:07 UTC |
43edde0 | Mark Taylor | 17 February 2019, 16:09:35 UTC | tweaks to DSS to run hydrostatic model with IMEX | 21 April 2019, 15:57:07 UTC |
c34b352 | Mark Taylor | 17 February 2019, 15:28:22 UTC | improved newton safety code, better EOS error messages | 21 April 2019, 15:57:06 UTC |
03c3a9d | Mark Taylor | 16 February 2019, 18:45:50 UTC | add more diagnostics for EOS failures also added Newton safety step | 21 April 2019, 15:57:06 UTC |