Skip to main content

Browse the archive

https://github.com/E3SM-Project/E3SM
25 August 2024, 11:30:11 UTC
sort by:
Revision Author Date Message Commit Date
358b09e Oksana Guba 05 June 2022, 22:25:03 UTC changes 05 June 2022, 22:25:03 UTC
9d0c269 Oksana Guba 05 June 2022, 22:24:18 UTC changes to run in june 2022 05 June 2022, 22:24:18 UTC
681717d Jon Wolfe 03 June 2022, 16:05:24 UTC Merge branch 'xylar/mpas-framework/fix-lapack-check' (PR #4972) MPAS Standalone: Fix check for LAPACK libraries Fixes an issue with standalone MPAS builds which resulted in error messages about a missing library even though this just means that the correct directory for LAPACK had not yet been found. Does not impact the E3SM build system. [BFB] 03 June 2022, 16:05:24 UTC
4c4750d James Foucar 02 June 2022, 20:47:57 UTC Merge branch 'jgfouca/cp_config_files' into master (PR #5007) Copy CIME's config_files.xml into our cime_config This is in preparation for the refactor of CIME to point to this file. [BFB] * jgfouca/cp_config_files: Copy CIME's config_files.xml into our cime_config 02 June 2022, 20:47:57 UTC
87a5403 James Foucar 02 June 2022, 20:43:26 UTC Copy CIME's config_files.xml into our cime_config This is in preparation for the refactor of CIME to point to this file. [BFB] 02 June 2022, 20:43:26 UTC
a03ccc9 Jon Wolfe 02 June 2022, 16:32:55 UTC Merge branch 'jonbob/coupler/fix-trigrid-states' (PR #4985) Fix the merging of states in atm_prep for trigrid configurations Fixes a problem first notice in SCREAM runs on trigrids that were receiving albedos greater than 1 from the coupler. Fluxes are being handled correctly, as tracked in the budgets. But states being sent to the atm need to be merged differently when the atm and lnd are on different grids. Using lfrin is necessary for fluxes to ensure conservation, but for states lfrac needs to be used since we are guaranteed that (lfrac+ifrac+ofrac)=1 on the atm grid. This change impacts the albedos as well as tref and qref sent to the atm. Fixes #4953 [non-BFB] for trigrid configurations 02 June 2022, 16:32:55 UTC
5f6b107 Jon Wolfe 02 June 2022, 16:27:53 UTC Merge branch 'mark-petersen/ocn/redi-closure-equal-gm' (PR #4904) Add ocean option for Redi kappa to be set equal to GM Brings in a new option to config_Redi_closure, 'equalGM', that sets RediKappa equal to gmBolusKappa everywhere. Default remains config_Redi_closure = 'constant'. [BFB] 02 June 2022, 16:27:53 UTC
caaf5e9 Peter Schwartz 02 June 2022, 16:03:20 UTC Merge remote-tracking branch 'glemfork/fates-nocomp-fix'(PR #4936) Adds entry for use_fates_nocomp to namelist_defaults.xml. Fixes #4869 [non-BFB] for FATES tests 02 June 2022, 16:03:20 UTC
24c70d9 noel 02 June 2022, 01:35:29 UTC Merge branch E3SM-Project/ndk/machinefiles/adjust-pelayouts-for-tests (PR #4992) For cori use 4 nodes as the default for land-only tests 02 June 2022, 01:35:29 UTC
1de055a James Foucar 01 June 2022, 19:55:19 UTC Merge branch 'jgfouca/cime_update_2022_05_16' into master (PR #4952) to 640f471c02f7663497c652aedf39a6564e7e800d Changes: 1) Remove GPU warning 2) Add support for containerized running of CIME Fixes: 1) Fix sys path for configure 2) Fix DAE test type 3) Fix E3SM provenance copying of GIT and preview run 4) Fix E3SM provenance: Fix build time provenance ('real' times) 5) Fix E3SM provenance: Fixes _find_gitroot 6) Fix buildlib.pio genf90 path for scorpio 7) create_test: Print correct project when using PROJECT from config_machines.xml [BFB] * jgfouca/cime_update_2022_05_16: Update CIME submodule 01 June 2022, 19:55:19 UTC
6984118 Jon Wolfe 01 June 2022, 16:16:41 UTC Merge branch 'brian-oneill/ocean/makefile-updates' (PR #4948) Makefile updates to fix parallel build failures Update object file dependency definitions in src/mode_init/Makefile and src/shared/Makefile to resolve build errors that occur when building ocean_model with multiple jobs (i.e. 'make -j'). Only used by the standalone model, so no impact on E3SM [BFB] 01 June 2022, 16:16:41 UTC
0f13c8b noel 30 May 2022, 21:32:33 UTC For cori use 4 nodes as the default for land-only tests (as it was before) Change the machine name perlmutter to now be: pm-gpu and/or pm-cpu Fixes #4959 Fixes #4981 [bfb] 30 May 2022, 21:32:33 UTC
fa1d32e Min Xu 27 May 2022, 19:23:39 UTC Merge branch 'sarats/machinefiles/summit-queues-envvars' (PR #4978) This resolves the following issues: * Unable to select debug queue * Environment variables are set multiple times with the last invocation doing the right option. * Avoided by changing the CPU env vars conditional on compilers. [BFB] 27 May 2022, 19:23:39 UTC
9281eda Jon Wolfe 27 May 2022, 15:45:07 UTC Merge branch 'brobey/mpas-ocean/openacc-topofsplit' (PR #4939) Adding OpenACC directives to top of split time integration routine Adding OpenACC to top of split time integration routine. This is mostly adding directives and should not impact anything else. [BFB] 27 May 2022, 15:45:07 UTC
7fc418e James Foucar 26 May 2022, 17:46:03 UTC Merge pull request #4947 from mt5555/dtime-updates update dtime for high res meshes Set correct ATM_NCPL (which controls the atmosphere timestep, dtime) for ne256, ne512 and ne1024 meshes. No impact on E3SM. Needed for SCREAM. [BFB] 26 May 2022, 17:46:03 UTC
bec5a6f Andrew M. Bradley 26 May 2022, 17:04:08 UTC Merge branch 'ambrad/homme/compose-cmake-for-eamxx' (PR #4967) Homme: Rework HOMME_ENABLE_COMPOSE symbol machinery for use in EAMxx Modify how HOMME_ENABLE_COMPOSE is defined in HOMME's cmake system, affecting standalone HOMME and EAMxx. This enables running SL transport in EAMxx v1. Fix a vectorization-related issue in trajectory calculation. Passes e3sm_developer and homme_integration on Chrysalis. Passes compose_ut and *GB-sl*cxx_vs_f90 tests on weaver GPU. [BFB] 26 May 2022, 17:04:08 UTC
015f392 Mark Petersen 26 May 2022, 02:44:56 UTC Add explanation to equalGM 26 May 2022, 02:44:56 UTC
142ee46 Mark Petersen 27 April 2022, 20:37:32 UTC For equalGM, change taper to GM too 25 May 2022, 19:31:06 UTC
4cb9c1b Mark Petersen 20 April 2022, 23:36:10 UTC Add config_Redi_closure='equalGM' 25 May 2022, 19:17:25 UTC
ba16635 Jon Wolfe 25 May 2022, 17:56:06 UTC Merge branch 'darincomeau/ocn/gm-horizontal-resolution-function' (PR #4864) Add horizontal tapering function to mesoscale eddy parameterizations This PR adds a new 'RossbyRadius' option to the horizontal tapering of GM and Redi, which is based on Hallberg (2013) - https://doi.org/10.1016/j.ocemod.2013.08.007, which turns the parameterization on if the Rossby Radius is resolved by at least two cells. These flags are: * config_Redi_horizontal_taper = 'ramp' (def), 'none', 'RossbyRadius' * config_GM_horizontal_taper = 'ramp' (def), 'none', 'RossbyRadius' This PR replaces the variable `gmResolutionTaper`, which was used for both GM and Redi, to the separate variables `RediHorizontalTaper` and `gmHorizontalTaper` so that Redi and GM tapering can be chosen separately, and it is clear in the code. Logic was added to the GM and Redi schemes so that the there is a base value in the arrays for Redi Kappa and GM Kappa. The base value is then multiplied by the taper array, which has a value between 0 and 1. Arrays that are static in time are computed on init. Under the following conditions, the arrays are recomputed at every time step: * config_Redi_horizontal_taper = 'RossbyRadius' (recompute RediHorizontalTaper and RediKappa) * config_GM_horizontal_taper = 'RossbyRadius' (recompute gmHorizontalTaper) [NML] adds MPAS-Ocean namelist options [BFB] 25 May 2022, 17:56:06 UTC
9a7ba1b Sarat Sreepathi 25 May 2022, 03:46:40 UTC Summit: add killable queue and change wallltimemax Evidently, walltime max is used as default wall time by CIME (which is weird). Anyway, setting that to 2 hours. Add killable queue. 25 May 2022, 03:46:40 UTC
1d97dfc Andrew M. Bradley 25 May 2022, 02:03:23 UTC Homme/SL: Fix a pack-size-related bug. If packsize % nlev != 0, eta_dot_dpdn's bottom boundary value of 0 was being overwritten by NaN. Re-zero it in this case. 25 May 2022, 02:29:27 UTC
445178b Jon Wolfe 24 May 2022, 21:41:45 UTC Fix the merging of states in atm_prep for trigrid setups 24 May 2022, 21:41:45 UTC
3e29568 Jon Wolfe 24 May 2022, 16:29:23 UTC Update testmods to new variable names 24 May 2022, 16:29:23 UTC
184002d Sarat Sreepathi 24 May 2022, 00:01:06 UTC Summit batch: add additional queues and attributes On Summit, add debug and other queues along with limits. 24 May 2022, 00:01:06 UTC
88dfd2b Sarat Sreepathi 23 May 2022, 23:59:57 UTC Summit:change env vars to compiler specific This avoids confusion from duplicate settings where the last invocation does the right setting for GPU compilers. 23 May 2022, 23:59:57 UTC
31b474f Jon Wolfe 23 May 2022, 18:39:25 UTC Merge branch 'philipwjones/mpas-framework/fix-config-dup' (PR #4907) Remove duplicate config variables in ocean Removes the auto-generation of duplicate config scalars (varinp_name) that were introduced in a previous commit for safety when adding the get_config_scalar routine. [BFB] 23 May 2022, 18:39:25 UTC
dc680ed Xylar Asay-Davis 20 May 2022, 23:50:31 UTC Fix check for LAPACK libraries Previously, there were error messages like: ``` ls: cannot access '/global/cfs/cdirs/e3sm/software/compass/cori-haswell/spack/spack_for_mache_1.4.1/var/spack/environments/dev_compass_1_1_0-alpha_4_gnu_mpt_netlib_lapack_petsc/.spack-env/view/liblapack.*': No such file or directory ``` even though this just means that the correct directory for LAPACK had not yet been found. 20 May 2022, 23:50:31 UTC
97a5112 Bob Robey 20 May 2022, 18:40:01 UTC Fixing sshNew equals sshCur loop for Summit and cleanup of OpenACC directives 20 May 2022, 18:40:01 UTC
4b21b54 Andrew M. Bradley 19 May 2022, 19:18:42 UTC Merge branch 'ambrad/homme/pg-rm-reshape' (PR #4786) Homme, physgrid: Remove reshape use in low-level code. Noel noticed on PM that the AMD compilers have trouble with optimizing reshape. Remove the use of reshape. On chrysalis: * e3sm_developer (which includes e3sm_atm_developer) and e3sm_atm_integration pass. * In homme_integration, the HOMMEBFB suite passes, while in the HOMME suite, the test thetah-sl-dcmip16_test1pg2 diffs by a reasonable amount. It is known that thetah-sl-dcmip16_test1pg2 is sensitive in the opt build (HOMME rather than HOMMEBFB). [BFB] except thetah-sl-dcmip16_test1pg2 in the HOMME suite of homme_integration 19 May 2022, 19:18:42 UTC
11b48ab Mark Petersen 18 May 2022, 21:35:33 UTC Change back order of operations for BFB 19 May 2022, 02:18:02 UTC
63768fc Milena Veneziani 18 May 2022, 23:41:23 UTC Update name of Rossby_ramp_min/max config options 18 May 2022, 23:41:23 UTC
7d24582 Milena Veneziani 18 May 2022, 23:17:33 UTC Fix Rossby Radius taper for small c_mode1 values 18 May 2022, 23:17:33 UTC
574082a Phil Jones 18 May 2022, 22:21:13 UTC removed duplicate declarations left from prior commit 18 May 2022, 22:21:13 UTC
2bcefd8 Brian O'Neill 18 May 2022, 22:12:27 UTC added more missing dependencies based on use statements 18 May 2022, 22:12:27 UTC
7991455 Andrew M. Bradley 17 May 2022, 00:49:24 UTC Homme: Rework HOMME_ENABLE_COMPOSE symbol machinery for use in EAMxx. 18 May 2022, 21:19:15 UTC
1bf3a6d noel 18 May 2022, 15:16:34 UTC Merge branch E3SM-Project/ndk/machinefiles/add-pm-cpu-pm-gpu (PR #4951) Add new machine for CPU-only nodes of perlmutter (and other perlmutter changes) 18 May 2022, 15:16:34 UTC
175eec6 Oksana Guba 17 May 2022, 20:04:34 UTC Merge remote-tracking branch 'OG/og/cleanup' (PR #4753) Removing allocates for cpair and rair variables, since they are always set to dry constants, in parts that are related to energy calculations. Removing repeated code in check_energy wrt TE and total water. Removing calls to strings comparisons in physpkg and in check_energy. Removing some if-statements related to waccm (mostly regarding energy routines). There are such calls (waccm and string comparison) in other places, esp. in parametrizations, leaving them for now. [bfb] 17 May 2022, 20:04:34 UTC
e3a23bd James Foucar 16 May 2022, 18:27:53 UTC Update CIME submodule to 640f471c02f7663497c652aedf39a6564e7e800d Changes: 1) Remove GPU warning 2) Add support for containerized running of CIME Fixes: 1) Fix sys path for configure 2) Fix DAE test type 3) Fix E3SM provenance copying of GIT and preview run 4) Fix E3SM provenance: Fix build time provenance ('real' times) 5) Fix E3SM provenance: Fixes _find_gitroot 6) Fix buildlib.pio genf90 path for scorpio 7) create_test: Print correct project when using PROJECT from config_machines.xml [BFB] 16 May 2022, 18:27:53 UTC
1c7673a noel 16 May 2022, 18:04:46 UTC Fix typo in last commit 16 May 2022, 18:04:46 UTC
160cc23 noel 16 May 2022, 17:58:50 UTC Add pm-cpu as a new machine -- CPU-only nodes of perlmutter Move the machine "perlmutter" to pm-gpu. Increase version of gnu and mpich. Adjust default perlmutter machine/compilers. Add in AMD compiler for pm-cpu. Adjust pelayouts for the default 1-node cases (just for testing) Add conditional for nersc slurm settings for GPU (only affects kokkos) 16 May 2022, 17:58:50 UTC
04c0376 Azamat Mametjanov 14 May 2022, 00:02:30 UTC Merge branch 'azamat/anvil/trigrid-bgc-pes' (PR #4950) Add tri-grid EAM+DOCN BGC PEs on Anvil [BFB] 14 May 2022, 00:02:30 UTC
102bbbc Azamat Mametjanov 13 May 2022, 23:55:21 UTC Rm tri-grid eam+docn BGC PEs from allactive PEs 13 May 2022, 23:55:21 UTC
9b14d67 Azamat Mametjanov 13 May 2022, 23:22:32 UTC Add tri-grid EAM+DOCN BGC PEs 13 May 2022, 23:22:32 UTC
8b12fc5 Benjamin R. Hillman 13 May 2022, 17:34:26 UTC Merge branch 'whannah/mmf/rename-compsets' (#4837) This reorganizes the MMF compsets to have a single "supported" MMF configuration type with 1-moment microphysics (i.e. MMF1). This also introduces a new naming convention for the MMF compsets as follows: - F2010-MMF1 - F20TR-MMF1 - FAQP-MMF1 - FRCE-MMF1 - FSCM-RICO-MMF1 - FSCM-ARM97-MMF1 Currently, these new compsets point to the C++ CRM code, but the idea is that this can be updated with new options or a new CRM without having to add new compset names. We intend to add corresponding "MMF2" compsets after the P3 microphysics is integrated. The other MMF configuration options are still available, but it is up to the user to know how to use these configurations either with a testmod or manually appending the appropriate flags to CAM_CONFIG_OPTS. I also took this opportunity to do a major clean up of components/eam/cime_config/config_component.xml, including renaming the AQP/RCE/SCM compsets for EAM to make everything more consistent. I delete the AQP<N> compsets in favor of "AQP" being equivalent to the old "AQP1" option. No one makes use of these other compsets and they are still available if we need them, so I think it's a good change to simplify full range of F compsets. I also tried to identify and delete several older compsets that are no longer in use and don't follow the current naming conventions. I probably missed some that could be deleted, but the file is still much cleaner and readable than before. 13 May 2022, 17:34:26 UTC
ed696b5 Jon Wolfe 13 May 2022, 16:18:38 UTC Merge branch 'maltrud/ocean/fix-BGC-diags' (PR #4944) Fix diagnostic bugs in ocean BGC This PR fixes a number of diagnostic fields in ocean BGC that were ok for E3SMv1 but are no longer consistent with definitions require by MarBL in E3SMv2. Fixes #4925 [BFB] 13 May 2022, 16:18:38 UTC
e07709c Phil Jones 13 May 2022, 15:19:40 UTC replace deprecated mesh, config Pool retrievals in self-attract and loading removed/replaced meshPool and configPool retrievals since info available through module use statements removed a block loop since multiple blocks no longer supported 13 May 2022, 15:19:40 UTC
7240e83 Brian O'Neill 13 May 2022, 15:19:23 UTC Makefile updates to fix parallel build failures Update object file dependency definitions in src/mode_init/Makefile and src/shared/Makefile to resolve build errors that occur when building ocean_model with multiple jobs (i.e. 'make -j') 13 May 2022, 15:19:23 UTC
81730f9 Phil Jones 18 April 2022, 22:30:04 UTC remove duplicate config variables removes the duplicate config scalars (varinp_name) that were introduced in a previous commit for safety when adding the get_config_scalar routine 12 May 2022, 23:08:40 UTC
c377707 Mark Taylor 12 May 2022, 22:57:50 UTC update dtime for high res meshes 12 May 2022, 22:57:50 UTC
013fe19 Jon Wolfe 12 May 2022, 17:06:47 UTC Merge branch 'jonbob/coupler/fix-bgcbudget-restart' (PR #4934) Fix coupler BGC carbon budget restarts Make the BGC carbon budget output BFB after restarting by moving lnd and ocn BGC budget calls to cime_run_calc_budgets2, where the atm BGC call is. Previously the BGC budget calls were located with the physics budget calls but this resulted in the "direct" lnd2atm and ocn2atm terms being missed in the lnd and ocn budget calculations but included in the atm. Fixes #4920 [BFB] 12 May 2022, 17:06:47 UTC
023fb93 Jon Wolfe 11 May 2022, 21:59:52 UTC Reorder logic with do_bgc_budgets as outer check 11 May 2022, 21:59:52 UTC
24859cf Xylar Asay-Davis 11 May 2022, 18:38:30 UTC Update E3SM namelist options 11 May 2022, 18:58:35 UTC
872c037 Jon Wolfe 11 May 2022, 17:45:17 UTC Merge branch 'matthewhoffman/mpas/stream_read_input_only' (PR #4929) Differentiate input and input/output streams in MPAS stream manager This PR improves the MPAS Stream Manager by introducing an optional argument to differentiate between streams of direction INPUT and direction INPUT_OUTPUT. Previously, the mpas_stream_mgr_read() routine ignored the difference between streams of direction INPUT and direction INPUT_OUTPUT (i.e. restart streams). However, there are situation where it would be desirable to read only truly direction INPUT streams. One example is at the initial time of a coldstart run - one would typically want to read any input streams without reading the restart stream (which does not exist yet). This PR adds an optional argument to force mpas_stream_mgr_read to ignore INPUT_OUTPUT streams and only read truly INPUT streams. Its default value maintains the previous behavior. A second commit modifies the MALI driver to make use of this new capability to improve and simplify the input stream handling at the initial time of a MALI simulation. [BFB] 11 May 2022, 17:45:17 UTC
d665e95 Jon Wolfe 11 May 2022, 16:16:26 UTC Make streams field list consistent with BGC changes 11 May 2022, 16:16:26 UTC
18310ce Mathew Maltrud 10 May 2022, 20:40:28 UTC fix ocn BGC diags that are no longer compatible with v2 (MarBL) 10 May 2022, 20:40:28 UTC
b808d07 Wuyin Lin 10 May 2022, 18:32:54 UTC Merge branch 'beharrop/atm/fix-co2-diags-restarts' (PR #4941) Fix restart issue for CO2 diagnostics in EAM Prevent failure in the CO2 diagnostics checker in EAM when using restart files produced on time steps not equal to the last time step in EAM. The fix is accomplished by removing the logical flag controlling when co2_diags_store_fields is called. Fixes #4935 [BFB] 10 May 2022, 18:32:54 UTC
1080383 Min Xu 10 May 2022, 18:05:20 UTC Merge branch 'ykim/crusher/craypr' (PR #4914) adds '-O1 -hfp0' flags for crayclang to reduce NaN-related errors This change updates only "crayclang_crusher.cmake" 10 May 2022, 18:05:20 UTC
f315409 Walter Hannah 09 May 2022, 19:44:10 UTC Merge master into whannah/mmf/rename-compsets 09 May 2022, 19:44:10 UTC
37f1f48 Xylar Asay-Davis 09 May 2022, 19:01:34 UTC Switch RossbyRadius GM taper to use a ramp This merge adds 2 namelist options: config_GM_Rossby_ramp_min config_GM_Rossby_ramp_max that control a ramp used to taper the GM Kappa coefficient based on the ratio of the cell size (dcEdge) to the Rossby Radius. The default minimum ratio was chosen so that GM turns off when the Rossby radius is resolved by 2 grid cells (the previous threhsold). The maximum ratio was chosen so that GM is fully on when a grid cell is 3 Rossby radii in size, corresponding to ~30 km in the Southern Ocean, or a little higher resolution than the EC30to60 mesh. This upper limit needs exploration! 09 May 2022, 19:22:57 UTC
a6090eb Xylar Asay-Davis 09 May 2022, 19:07:10 UTC Remove trailing whitespace 09 May 2022, 19:07:10 UTC
25ea3db James Foucar 09 May 2022, 18:42:23 UTC Merge branch 'azamat/pes/split-config-pesall' (PR #4928) PE-layouts are picked based on active component of a case or based on the prior config_pesall for all-active compsets. This PR also comes with a CIME update: To a3c94512e105ff1f21adf500fd317ac56961635e Changes: 1) Add RUNDIR as an accessible setting in the cmake build system 2) First step in the direction of implementing async IO in CESM 3) Add numeric time-stamp to jenkins archiving 4) Update grid schema 5) Set component-specific config_pes in E3SM 6) Allow any case env to be used as a directives selector in config_batch.xml Fixes #4834 [BFB] * azamat/pes/split-config-pesall: Homme genf90 fix Add back custom mpaso and elm PEs for Mappy Add minor CIME fix for configure tool CIME update Add cime update to set component-specific PES_SPEC_FILE Split config_pesall into component-specific config_pes 09 May 2022, 18:42:42 UTC
5322849 Jon Wolfe 09 May 2022, 17:32:48 UTC Merge branch 'hkang/ocean/si_bfbsum' (PR #4898) Change a reproducible sum algorithm in SI solver Change a reproducible sum algorithm in the ocean split-implicit barotropic mode solver. The changed algorithm uses a global reproducible summation module in components/mpas-framework/src/framework/mpas_global_sum_mod.F. This option is off by default. [BFB] 09 May 2022, 17:32:48 UTC
50a5fbd Bryce E Harrop 06 May 2022, 23:31:34 UTC Add a fix for restarts generated before the final time step 06 May 2022, 23:31:34 UTC
996c7e7 James Foucar 06 May 2022, 21:19:50 UTC Merge branch 'jasonb5-fix_cime_templates' into master (PR #4940) Fixes CIME import paths in template files Fixes CIME imports for template.case.run.sh and template.case.st_archive. Also fixes imports for template.case.run and template.case.test, not sure if these are needed as they're only called by CIME, which fixes up the import paths when executing the scripts. [BFB] * jasonb5-fix_cime_templates: Fixes CIME import paths in template files 06 May 2022, 21:19:50 UTC
ba02fd0 Wuyin Lin 06 May 2022, 20:26:45 UTC Merge branch 'wlin/lnd/fsurdat_2010_ne120np4' (PR #4932) Added fsurdat for simyr2010 on ne120np4 This is to enable simulations with ne120_ne120 grid. [BFB] 06 May 2022, 20:26:45 UTC
294cada Jason Boutte 06 May 2022, 18:50:34 UTC Fixes CIME import paths in template files 06 May 2022, 18:50:34 UTC
f689be6 Jon Wolfe 06 May 2022, 18:11:00 UTC Merge branch 'njeffery/seaice/update_ice_bgc_namelist' (PR #4918) Updates seaice BGC namelist defaults to match Registry defaults Update E3SM default BGC parameter values have been tested in ocean-ice bgc sensitivity simulations for 200+ years. Also turns on kill simulation if carbon conservation in sea ice fails bounds (only if BGC is active). [NML] [non-BFB] only when marine BGC is active 06 May 2022, 18:11:00 UTC
9ad8f20 James Foucar 06 May 2022, 16:10:19 UTC Homme genf90 fix 06 May 2022, 16:10:24 UTC
7170a47 Azamat Mametjanov 05 May 2022, 22:18:31 UTC Add back custom mpaso and elm PEs for Mappy 05 May 2022, 22:18:31 UTC
03e3252 James Foucar 05 May 2022, 18:09:01 UTC Add minor CIME fix for configure tool 05 May 2022, 18:09:01 UTC
bf70a9d Gregory Lemieux 05 May 2022, 06:29:34 UTC adding missing default value for nocomp 05 May 2022, 06:29:34 UTC
866cca7 James Foucar 04 May 2022, 21:31:59 UTC Merge remote-tracking branch 'origin/master' into azamat/pes/split-config-pesall * origin/master: run_e3sm.sh: Make it explicit for users to change case name run_e3sm: case_group argument activated for create_newcase when valid run_e3sm script: Replace default case name and case group placeholders Add support for northamericax4v1pg2_EC30to60E2r2 resolution Corrected possible division by zero in ice bgc MPAS Standalone: Add OpenMP support to gnu-nersc Add MPI process stride for tasks exclusively owned by a component 04 May 2022, 21:31:59 UTC
157f1fc James Foucar 04 May 2022, 21:24:14 UTC CIME update To a3c94512e105ff1f21adf500fd317ac56961635e Changes: 1) Add RUNDIR as an accessible setting in the cmake build system 2) First step in the direction of implementing async IO in CESM 3) Add numeric time-stamp to jenkins archiving 4) Update grid schema 5) Set component-specific config_pes in E3SM 6) Allow any case env to be used as a directives selector in config_batch.xml Fixes: [BFB] 04 May 2022, 21:24:14 UTC
00e5c34 Azamat Mametjanov 04 May 2022, 19:33:55 UTC Merge branch 'azamat/driver/add-exclusive-process-stride' (PR #4859) Add MPI process stride for tasks exclusively owned by a component This lets a component run exclusively on an MPI task: e.g. ATM on 6 MPI tasks for 6 GPUs on a Summit node. [NML] - due to new excl_stride namelist variables 04 May 2022, 19:33:55 UTC
b797163 Jon Wolfe 04 May 2022, 17:59:06 UTC Move lnd and ocn BGC budget calls to cime_run_calc_budgets2 04 May 2022, 17:59:06 UTC
d57fb31 Jon Wolfe 04 May 2022, 14:54:48 UTC Merge branch 'origin/njeffery/seaice/correct_ice_bgc_nan' (PR #4916) Correct possible division by zero in ice bgc Sets BGC vertical diffusion to zero when ice thickness is small Also removes trailing spaces in ice_brine.F90 Fixes #4913 [BFB] 04 May 2022, 14:54:48 UTC
e7a5ea1 Wuyin Lin 04 May 2022, 12:03:05 UTC Added fsurdat for simyr2010 on ne120np4 04 May 2022, 12:03:05 UTC
34c112a Jon Wolfe 03 May 2022, 17:44:34 UTC Merge branch 'xylar/mpas-framework/add-openmp-to-gnu-nersc' (PR #4910) MPAS Standalone: Add OpenMP support to gnu-nersc For some reason this was omitted when OpenMP support was added 8 years ago. This has become a problem in compass because we switched to building with OpenMP on by default: MPAS-Dev/compass#364 Does not impact E3SM builds. [BFB] 03 May 2022, 17:44:34 UTC
3a6b4ed Jon Wolfe 03 May 2022, 17:23:42 UTC Merge branch 'jonbob/scripts/add-northamericax4v1pg2-ec30to60e2r2' (PR #4919) Add support for northamericax4v1pg2_EC30to60E2r2 resolution Brings in the grid definition for the northamericax4v1pg2_EC30to60E2r2 resolution as well as all necessary files. It uses r05 for the runoff resolution, so make comparisons with low-res atm/high-res ocn (ne30pg2_WC14) more consistent. All new files have been staged on the inputdata repo. [BFB] 03 May 2022, 17:23:42 UTC
d45a620 Azamat Mametjanov 02 May 2022, 22:28:26 UTC Add cime update to set component-specific PES_SPEC_FILE 02 May 2022, 22:28:26 UTC
a9e0878 Robert Jacob 02 May 2022, 21:42:20 UTC Merge 'sarats/scripts/run-e3sm-case-group' (PR #4922) Replace default case name and case group placeholders. This is required to avoid unwarranted usage of case_group that interferes with aggregation of various production simulation campaigns. [BFB] Testing: I was able to run ./create_newcase with --case-group "" as defined. 02 May 2022, 21:42:20 UTC
1da6aad Bob Robey 02 May 2022, 21:30:08 UTC Adding OpenACC deeper from top of split time integration routine 02 May 2022, 21:30:08 UTC
9bd5730 Bob Robey 02 May 2022, 21:20:03 UTC Adding OpenACC at top of split time integration routine 02 May 2022, 21:20:03 UTC
1ceddf7 Matthew Hoffman 29 April 2022, 20:04:33 UTC Simplify & generalize MALI stream read behavior at initial time This commit removes the restriction that the initial condition stream have the name 'input' and now allows any streams of direction input that have input_interval='initial_only' to be read at the initial time. This allows an initial condition to be spread across multiple files. It also prevents an obscure error that was causing streams of input_interval='initial_only' to be read on the initial time of a restart. With this change, 'initial_only' truly means the initial time of a simulation, regardless of restarting it or not. This commit also adds some missing timer calls. 02 May 2022, 17:18:51 UTC
a2fc6b9 Matthew Hoffman 29 April 2022, 20:00:36 UTC Allow mpas_stream_mgr_read() to read only strictly INPUT direction streams Previously, the mpas_stream_mgr_read() routine ignored the difference between streams of direction INPUT and direction INPUT_OUTPUT (i.e. restart streams). However, there are situation where it would be desirable to read only truly direction INPUT streams. One example is at the initial time of a coldstart run - one wants to read any input streams without reading the restart stream (which does not exist yet). This commit adds an optional argument to force mpas_stream_mgr_read to ignore INPUT_OUTPUT streams and only read truly INPUT streams. Its default value maintains the previous behavior. 02 May 2022, 17:18:08 UTC
54858fb Azamat Mametjanov 30 April 2022, 02:32:01 UTC Split config_pesall into component-specific config_pes 30 April 2022, 02:32:01 UTC
87cb5bb Jon Wolfe 29 April 2022, 19:07:24 UTC Merge branch 'jonbob/cpl/add-bgc-budget2' (PR #4885) Initial implementation of BGC carbon budget in the coupler Brings in a new coupler carbon budget which is implemented similarly to the current heat and water budgets, but in a separate source file. The output is intermingled with that from the other budgets, so that the monthly budget tables are all output before the annual ones, for example. The BGC budget is controlled overall by the BUDGETS flag found in env_run.xml but also has its own "do_bgc_budgets" flag that is included in the driver seq_infodata_inparm namelist and can be set by user_nl_cpl. By default it is off unless the compset includes BGC fluxes, in which case it is set to true. [NML] [BFB] 29 April 2022, 19:07:24 UTC
3044461 Sarat Sreepathi 29 April 2022, 17:04:48 UTC run_e3sm.sh: Make it explicit for users to change case name [BFB] 29 April 2022, 17:04:48 UTC
8543cba Sarat Sreepathi 29 April 2022, 00:43:33 UTC run_e3sm: case_group argument activated for create_newcase when valid 29 April 2022, 00:43:33 UTC
e1e2c84 Sarat Sreepathi 29 April 2022, 00:22:45 UTC run_e3sm script: Replace default case name and case group placeholders This is required to avoid unwarranted usage of case_group that interferes with aggregation of various production simulation campaigns. [BFB] 29 April 2022, 00:22:45 UTC
fa9fef0 Jon Wolfe 28 April 2022, 19:35:29 UTC Add support for northamericax4v1pg2_EC30to60E2r2 resolution 28 April 2022, 19:35:29 UTC
2778814 Min Xu 28 April 2022, 18:09:24 UTC Merge branch 'sarats/machinefiles/summit-perf-archive2' (PR #4917) Set performance archive location to cli115 for everyone [BFB] 28 April 2022, 18:09:24 UTC
b4b1bef Nicole Jeffery 28 April 2022, 16:14:29 UTC Updates seaice BGC namelist defaults to match Registry defaults. 1.BGC parameter values have been tested in ocean-ice bgc sensitivity simulations for 200+ years. 2. Also turns on kill simulation if carbon conservation in sea ice fails bounds (only if BGC is active). Ran to completion in a 5 year GCASE with BGC active. Passed for restartability. non-BFB when BGC is active. BFB otherwise. 28 April 2022, 16:14:29 UTC
ff5633a Jon Wolfe 28 April 2022, 15:18:23 UTC Merge branch 'jonbob/data-models/solar-zenith-angle-correction' (PR #4589) Corrects the calculation of solar zenith angle, which was off by a timestep The solar zenith angle calculation used by the data models was off by one timestep. This issue was first reported by CESM in ESMCI Issue #3380 and subsequently fixed in ESCOMP PR #123. This PR implements that solution in E3SM. Fixes #4575 [non-BFB] for some configurations with data models 28 April 2022, 15:18:23 UTC
5d6c7b8 Sarat Sreepathi 27 April 2022, 22:16:50 UTC Summit perf archive: set location to cli115 for all [BFB] 27 April 2022, 22:16:50 UTC
e8c94b9 Nicole Jeffery 27 April 2022, 19:10:12 UTC Corrected possible division by zero in ice bgc Fixes issue #4913 1. Sets BGC vertical diffusion to zero when ice thickness is small 2. Also removes trailing spaces in ice_brine.F90 BFB in 10 day test with BGC active. 27 April 2022, 19:10:12 UTC
e25d6a7 Min Xu 27 April 2022, 03:09:39 UTC Merge branch 'sarats/machinefiles/summit-perf-archive' (PR #4915) Previously only enabled for cli115, cli127. Performance archival for Walter's ALCC project (cli145) was not enabled. Included a wildcard entry to match any project. [BFB] 27 April 2022, 03:09:39 UTC
ee6c7a4 Sarat Sreepathi 27 April 2022, 00:38:47 UTC Enable performance archiving for all projects on Summit Previously only enabled for cli115, cli127. [BFB] 27 April 2022, 00:38:47 UTC
0b23c2f Youngsung Kim 26 April 2022, 19:28:49 UTC added '-O1 -hfp0' flags for crayclang to reduce NaN-related errors 26 April 2022, 19:28:49 UTC
back to top