| f61cb16 | Klaus Zimmermann | 21 December 2020, 10:08:16 UTC | Update release schedule (#1948) * Add labels to changelogs of individual versions for easy reference * Add "Past releases" section and sort releases into upcoming and past * Change link and table formatting * Add new release manager for version 2.2.0 Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 21 December 2020, 10:08:16 UTC |
| da9521a | Lisa Bock | 16 December 2020, 16:46:58 UTC | Diagnostic for recipe_eyring13jgr.yml Fig. 12 (#1922) * Add files via upload figure 12 eyring13 * Add files via upload * Update eyring13jgr_fig12.ncl Some code cleanup. * more code cleanup * adjustjments to test the recipe with CMIP5 and CMIP6 data * adding provenance, more code clean-up * code cleaning + small fix in provenance * start adding documention * add ERA5 * add figure to docu * update recipe with CMIP6 models * seperate ering13jgr documentation * tested recipe * fix yaml style of recipe * Update recipe_eyring13jgr_12.yml * Update recipe_eyring13jgr.rst Implementation of a few corrections to the diagnostics documentation Co-authored-by: irenecionni <irene.cionni@enea.it> Co-authored-by: Birgit Hassler <33543691+hb326@users.noreply.github.com> Co-authored-by: Birgit Hassler <birgit.hassler@dlr.de> | 16 December 2020, 16:46:58 UTC |
| d9bf983 | Stef Smeets | 16 December 2020, 16:04:43 UTC | Refine pull request review guidelines (#1924) * Shorten tasks in task list * Condense sections * Turn tables into sections/subsections * Tweak text slightly * Update documentation and links in PR template * Tweak documentation * Fix links * Add request to review two PRs in the repo * Fix enumerated list formatting * Refine text in template * Add icons to distinguish scientific and technical reviews * Fix typo * Update PR template * Update links * Add page with dataset contributing guidelines * Update links * Update links to live readthedocs * Apply suggestions from code review Co-authored-by: Niels Drost <n.drost@esciencecenter.nl> * Update template with suggestions from code review * Add emoji * Apply suggestions from code review Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> * Fix indentation (spaces -> tabs) * Apply suggestions from code review * Make the text a bit more friendly * Implement feedback from reviews * Update index.rst Fixed indentation (tabs not spaces) Co-authored-by: Niels Drost <n.drost@esciencecenter.nl> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 16 December 2020, 16:04:43 UTC |
| 8960d32 | Stef Smeets | 16 December 2020, 14:57:29 UTC | Fix issues with bibtex references (#1955) * Update entry to more appropriate type @article entries MUST have journal names specified, which is not the case here * Fix month specification * Replace latex strangeness with ascii symbols * Add trailing comma * Fix year and add author * Remove strange end of line symbols | 16 December 2020, 14:57:29 UTC |
| 0387b5a | Birgit Hassler | 16 December 2020, 09:22:14 UTC | Documentation on how to move code from a private repository to a public repository (#1920) * Create private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update index.rst * Update private_repository.rst * Update doc/sphinx/source/community/private_repository.rst Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> * Update private_repository.rst * Update private_repository.rst * Update release_strategy.rst * Update release_strategy.rst * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst * Update release_strategy.rst * Update private_repository.rst * Update private_repository.rst * Fix broken link * Add link to review and merge steps * Update private_repository.rst Changed the numbering from "1)" to "1." for consistency with the rest of the documentation. * Update private_repository.rst * Update private_repository.rst * Update private_repository.rst Underlining of the different sections now consistent with the sections in "datasets". * Add link to introduction Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 16 December 2020, 09:22:14 UTC |
| 40afc4a | Axel Lauer | 15 December 2020, 11:49:19 UTC | bugfix: time weights in time_operations (#1956) * bugfix: time weights in time_operations * Update esmvaltool/diag_scripts/shared/statistics.ncl Co-authored-by: Manuel Schlund <32543114+schlunma@users.noreply.github.com> * added check for supported calendar in time_operations Co-authored-by: Manuel Schlund <32543114+schlunma@users.noreply.github.com> | 15 December 2020, 11:49:19 UTC |
| 0f3441d | Valeriu Predoi | 14 December 2020, 17:47:55 UTC | Cmorizer for latest ESACCI-SST data (#1895) * Use pytest-xdist, avoid setup.py test and update CircleCI config * Try to use codacy coverage orb * Remove test alias * added py cmorizer and renamed the old ncl one * added tserr * removed renamed script * renamed script * docstring header * removed file * Minor tweaks to ESACCI-SST cmorizer and added C3S-SST cmorizer. * Merged cmorizers into one and added one of the new references. * Added download instructions. * Updated modification history. * change to new version * change to new version * change to new version * removed old version of cmoriser * cleaned up cmoriser * Updated download instructions. * added Charles * added Charles * Added ORCID ID. * Updated version number, added comment regarding uncertainty and added reference for bias correction. * changed time stamp and added approval Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> Co-authored-by: Charles Roberts <c.j.roberts@reading.ac.uk> | 14 December 2020, 17:47:55 UTC |
| e53b5a0 | SarahAlidoost | 14 December 2020, 12:07:35 UTC | Allow multiple references for a cmorizer script (#1953) * refactor extract_doi_value to support multiple references * add documention on how to add reference tag * fix linter error * Update esmvaltool/cmorizers/obs/utilities.py Co-authored-by: Stef Smeets <stefsmeets@users.noreply.github.com> Co-authored-by: Stef Smeets <stefsmeets@users.noreply.github.com> | 14 December 2020, 12:07:35 UTC |
| a1d02f0 | bascrezee | 11 December 2020, 13:41:18 UTC | cmorizer for GRACE data (#1694) * cmorizer for GRACE data * added GRACE to doc * Moved URL to config file * change calendar from proleptic_gregorian to gregorian * ran isort * Fix keyword argument * Read months table from disk * ask user to inspect months table * removed unused import * Update doc/sphinx/source/input.rst Co-authored-by: Mattia Righi <mattia.righi@dlr.de> * Update esmvaltool/references/grace.bibtex Co-authored-by: Mattia Righi <mattia.righi@dlr.de> * config file updated * time bounds read from csv * filenames from config file * check csv file * fix codacy issue * fix codacy issue * fix codacy issue Co-authored-by: Mattia Righi <mattia.righi@dlr.de> Co-authored-by: Remi Kazeroni <remi.kazeroni@dlr.de> | 11 December 2020, 13:41:18 UTC |
| 36bc310 | Bouwe Andela | 10 December 2020, 12:02:05 UTC | Fix conda installation test on CircleCI (#1952) | 10 December 2020, 12:02:05 UTC |
| 2096d15 | Bouwe Andela | 10 December 2020, 09:59:53 UTC | Make CircleCI badge specific to master branch (#1831) | 10 December 2020, 09:59:53 UTC |
| 505cd57 | Manuel Schlund | 10 December 2020, 08:36:24 UTC | Deprecate classes Variable, Variables and Datasets (#1944) * Deprecate classes Variable, Variables and Datasets * Removed object-oriented python recipe and diagnostic * Added test for deprecation and adapted version numbers * Fixed typo | 10 December 2020, 08:36:24 UTC |
| c989957 | Bettina Gier | 09 December 2020, 12:42:06 UTC | Extended ESRL cmorizer (#1937) * Rewrite ESRL cmorizer to python and add ability for surface flask stations * Added padding for missing months * Added error message for non-existing stations * fix codaxy issues * added option 'all' and download flag * cleanup * fix codacy * fix codacy 2 | 09 December 2020, 12:42:06 UTC |
| c9f14d8 | Valeriu Predoi | 07 December 2020, 17:11:48 UTC | Add the email list address (#1938) | 07 December 2020, 17:11:48 UTC |
| d6c68fc | Valeriu Predoi | 07 December 2020, 13:01:24 UTC | temporary deactivation of OSX actions (#1939) | 07 December 2020, 13:01:24 UTC |
| 9c4ebdd | Bouwe Andela | 04 December 2020, 15:47:52 UTC | Fix docker build (#1934) | 04 December 2020, 15:47:52 UTC |
| 421cd51 | Valeriu Predoi | 03 December 2020, 17:55:47 UTC | Fix mlr test with solution that works for CentOS too (#1936) * Use pytest-xdist, avoid setup.py test and update CircleCI config * Try to use codacy coverage orb * Remove test alias * fix test with Manu solution Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 03 December 2020, 17:55:47 UTC |
| 7324860 | Manuel Schlund | 02 December 2020, 12:18:40 UTC | Added bibtex file for schlund20jgr (#1928) | 02 December 2020, 12:18:40 UTC |
| 640aae3 | Valeriu Predoi | 01 December 2020, 15:48:54 UTC | Release notes v2.1.1 (#1932) Update release notes and increase version to 2.1.1 | 01 December 2020, 15:48:54 UTC |
| 951c0ce | Birgit Hassler | 01 December 2020, 12:21:41 UTC | Adding tutorial links to documentation (#1927) * Update configuration.rst * Update running.rst * Update running.rst * Update recipe.rst * Update configuration.rst * Update running.rst * Update configuration.rst * Update doc/sphinx/source/develop/recipe.rst Co-authored-by: SarahAlidoost <55081872+SarahAlidoost@users.noreply.github.com> * Update doc/sphinx/source/quickstart/configuration.rst Co-authored-by: SarahAlidoost <55081872+SarahAlidoost@users.noreply.github.com> * Update installation.rst Co-authored-by: SarahAlidoost <55081872+SarahAlidoost@users.noreply.github.com> | 01 December 2020, 12:21:41 UTC |
| fc7e996 | Bouwe Andela | 01 December 2020, 12:07:59 UTC | Fix style issue (#1929) | 01 December 2020, 12:07:59 UTC |
| 0a2cd65 | Bouwe Andela | 26 November 2020, 16:29:03 UTC | Add guidance on how to review a pull request (#1872) Co-authored-by: Axel Lauer <axel.lauer@dlr.de> Co-authored-by: Niels Drost <n.drost@esciencecenter.nl> | 26 November 2020, 16:29:03 UTC |
| d835493 | Lukas Brunner | 26 November 2020, 13:15:01 UTC | Restructure ClimWIP (#1919) * Move core function to separate folder & rename * Move functions * Update scrip path in recipe * Move function from plot_utilities to core_utilities * Update import statements * Update import statements * Fix style issue * Fix style issue * Fix style issue | 26 November 2020, 13:15:01 UTC |
| 92a9620 | Valeriu Predoi | 26 November 2020, 09:13:18 UTC | switched to current working conda setup hooks (#1913) | 26 November 2020, 09:13:18 UTC |
| 03c9778 | Lukas Brunner | 24 November 2020, 11:19:02 UTC | Implementation of ensemble member recognition to the ClimWIP diagnostic (#1852) Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> | 24 November 2020, 11:19:02 UTC |
| 5f0d04a | Lukas Brunner | 10 November 2020, 11:35:39 UTC | Add the option to weight variable groups in ClimWIP (#1856) * Rename sigma parameters for consistency * Add option to weight variable groups * Allow either performance or independence groups to be empty Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> | 10 November 2020, 11:35:39 UTC |
| e15f705 | Bouwe Andela | 05 November 2020, 15:47:42 UTC | Pin subpackages (#1899) | 05 November 2020, 15:47:42 UTC |
| ccd1eec | Lukas Brunner | 04 November 2020, 13:04:00 UTC | Add mapplot diagnostic to ClimWIP (#1864) Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> | 04 November 2020, 13:04:00 UTC |
| 9c79cbb | Bouwe Andela | 04 November 2020, 11:21:49 UTC | Pin matplotlib to <3.3 and add compilers (#1898) | 04 November 2020, 11:21:49 UTC |
| 6fa4b19 | Bouwe Andela | 26 October 2020, 15:43:21 UTC | Update instructions on making a release (#1867) | 26 October 2020, 15:43:21 UTC |
| b99c0b0 | Valeriu Predoi | 26 October 2020, 12:42:01 UTC | Update changelog for release 2.1 (#1886) | 26 October 2020, 12:42:01 UTC |
| 669114b | Valeriu Predoi | 26 October 2020, 11:20:52 UTC | Github Actions Build Packages and Deploy tests (conda and PyPi) (#1858) | 26 October 2020, 11:20:52 UTC |
| 7a8d422 | Bouwe Andela | 26 October 2020, 09:14:38 UTC | Fix the conda build on CircleCI (#1883) | 26 October 2020, 09:14:38 UTC |
| 56ca8d4 | Bouwe Andela | 23 October 2020, 13:18:56 UTC | Pin iris to version 2 (#1881) | 23 October 2020, 13:18:56 UTC |
| 5e41ea4 | Bouwe Andela | 22 October 2020, 18:13:04 UTC | Adjust recipe_extract_shape.yml to recent changes in the example diagnostic.py (#1880) * Adjust recipe to changes in diagnostic.py * Update documentation | 22 October 2020, 18:13:04 UTC |
| 894f3fb | Valeriu Predoi | 19 October 2020, 15:55:19 UTC | Increase version to 2.1.0 and add release notes (#1868) Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 19 October 2020, 15:55:19 UTC |
| 7513e86 | Valeriu Predoi | 19 October 2020, 15:34:44 UTC | Pin eccodes to not use eccodes=2.19.0 for cdo to work (#1869) | 19 October 2020, 15:34:44 UTC |
| e61e5cb | Manuel Schlund | 19 October 2020, 15:29:17 UTC | Add recipe and diagnostics for Schlund et al., JGR: Biogeosciences, 2020 (#1860) | 19 October 2020, 15:29:17 UTC |
| 48c339d | Bettina Gier | 19 October 2020, 11:59:43 UTC | Support for multiple model occurence in perfmetrics main (#1649) | 19 October 2020, 11:59:43 UTC |
| d4f93d2 | Bouwe Andela | 16 October 2020, 12:17:36 UTC | Improve description of how to use draft_release_notes.py (#1848) | 16 October 2020, 12:17:36 UTC |
| 112b70b | Manuel Schlund | 16 October 2020, 11:42:11 UTC | Updated derivation test recipe (#1790) * Updated preprocessor derive test recipe with new derived variables and CMIP6 models * Simplified structure of derive test recipe | 16 October 2020, 11:42:11 UTC |
| 4d905d7 | Bouwe Andela | 16 October 2020, 11:33:50 UTC | Improve the Python example diagnostic and documentation (#1827) - Add documentation on the example Python recipe - Demonstrate plotting a timeseries in addition to a map - Use CMIP6 as well as CMIP5 data in one recipe - Reduce amount of data needed (now 2 files of about 60 MB each). - Anticipates the move of output_file_type/write_plots/write_netcdf from config-user.yml to those recipes that need - Updates the intersphinx URLs Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> Co-authored-by: Manuel Schlund <32543114+schlunma@users.noreply.github.com> | 16 October 2020, 11:33:50 UTC |
| 72e487a | Manuel Schlund | 13 October 2020, 11:42:57 UTC | Added CMORizer for Scripps-CO2-KUM (#1857) * Added CMORizer for Scripps-CO2-KUM (co2s) * Updated data of Scripps-CO2-KUM CMORizer * Updated documentation | 13 October 2020, 11:42:57 UTC |
| f2aec83 | Javier Vegas-Regidor | 12 October 2020, 20:17:44 UTC | Update ESMValCore requirement to v2.1 (#1839) Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 12 October 2020, 20:17:44 UTC |
| d56760d | Manuel Schlund | 12 October 2020, 15:34:05 UTC | Changes in shared scripts for Schlund et al., JGR: Biogeosciences, 2020 (#1845) * Added necessery changes in shared files for Schlund et al. (JGR) * Ran isort * Renamed preprocess_cube_before_merging function | 12 October 2020, 15:34:05 UTC |
| a7dfd0e | Bouwe Andela | 09 October 2020, 16:11:20 UTC | Add more info on documenting a recipe (#1795) * Add more info on documenting a recipe * More clear description of docstrings | 09 October 2020, 16:11:20 UTC |
| a259b19 | Valeriu Predoi | 07 October 2020, 14:57:20 UTC | Remove unreviewed autoassess recipes (#1840) * Use pytest-xdist, avoid setup.py test and update CircleCI config * Try to use codacy coverage orb * Remove test alias * Require minimal version of pytest-cov * Require minimum version of pytest-flake8 * added extra requirement for conda build memory * iremoved unreviewed autoassess recipes from master * removed odd old bit Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 07 October 2020, 14:57:20 UTC |
| b47feac | Jaro Camphuijsen | 07 October 2020, 14:31:05 UTC | Implement the climwip weighting scheme in a recipe and diagnostic (#1648) Co-authored-by: Lukas Brunner <lukas.brunner@live.at> Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> Co-authored-by: Stef Smeets <s.smeets@esciencecenter.nl> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 07 October 2020, 14:31:05 UTC |
| ba34f4a | Bouwe Andela | 01 October 2020, 10:41:01 UTC | Update esmvaltool run command everywhere in documentation (#1820) * Update documentation on esmvaltool run command * Work around documentation build issue | 01 October 2020, 10:41:01 UTC |
| 34e1975 | Bouwe Andela | 28 September 2020, 12:23:42 UTC | Replace vmprof with vprof (#1829) | 28 September 2020, 12:23:42 UTC |
| 178e4f7 | Peter Kalverla | 24 September 2020, 11:10:34 UTC | Recipe to reproduce the 2014 KNMI Climate Scenarios (kcs). (#1667) Co-authored-by: SarahAlidoost <f.alidoost@esciencecenter.nl> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 24 September 2020, 11:10:34 UTC |
| f24bb8a | Klaus Zimmermann | 21 September 2020, 19:17:45 UTC | Add release strategy to community documentation (#1809) Co-authored-by: Niels Drost <n.drost@esciencecenter.nl> | 21 September 2020, 19:17:45 UTC |
| 8f6340c | Bouwe Andela | 18 September 2020, 14:45:10 UTC | Add more information on working on cluster attached to ESGF node (#1821) * Add more information on working on cluster attached to ESGF node Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> | 18 September 2020, 14:45:10 UTC |
| bdc8497 | Stef Smeets | 18 September 2020, 07:10:26 UTC | Fix yapf-isort import formatting conflict (#1822) Add trailing comma in isort config. Yapf respects the trailing comma and will not reformat the imports. See: https://github.com/ESMValGroup/ESMValCore/issues/777 | 18 September 2020, 07:10:26 UTC |
| 1125c36 | Valeriu Predoi | 17 September 2020, 11:19:00 UTC | GitHub Actions (#1806) * Use pytest-xdist, avoid setup.py test and update CircleCI config * Try to use codacy coverage orb * Remove test alias * Require minimal version of pytest-cov * Require minimum version of pytest-flake8 * added extra requirement for conda build memory * added actions workflows * added conda build workflow * comment out julis symlink for now * use 2020 pip solver * gaahhh * force ncurses to be from conda forge * wrong OS for ncurses fixed * removed py 38 from OSX conda install * try to install R and Julia first * force ncurses from conda forge * removed channel activation and forcing ncurses * force and keep ancurses from conda forge * force ncurses via uninstall * gave up installing full package and revert to only python and ncl * remove tweaking ncurses * made the r-lint as install test to be skipped * removed py 3.8 for osx testing * removed py 3.8 for osx testing * removed py 3.8 for osx testing * removed requirement - weird - I thought I removed this ages ago * removed some comments Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 17 September 2020, 11:19:00 UTC |
| 2bcc682 | Stef Smeets | 14 September 2020, 09:22:02 UTC | Remove isort setup to fix formatting conflict with yapf (#1815) | 14 September 2020, 09:22:02 UTC |
| 815dc31 | Stef Smeets | 07 September 2020, 19:07:49 UTC | Move pre-commit excludes to top-level and correct order of lintr and styler (#1805) * Move excludes to top-level * Run styler before lintr in pre-commit | 07 September 2020, 19:07:49 UTC |
| 3117b20 | Bouwe Andela | 04 September 2020, 12:43:34 UTC | Speed up tests on CircleCI and use pytest to run them (#1804) * Avoid setup.py test * Use pytest-xdist * Use Codacy coverage orb * Require minimal version of pytest-cov * Require minimum version of pytest-flake8 | 04 September 2020, 12:43:34 UTC |
| fcc1023 | Stef Smeets | 31 August 2020, 15:17:15 UTC | Add pre-commit for linting/formatting (#1796) Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 31 August 2020, 15:17:15 UTC |
| 0421b1c | Bouwe Andela | 26 August 2020, 09:25:07 UTC | Avoid autodocsumm 0.2.0 and update doc dependencies (#1794) | 26 August 2020, 09:25:07 UTC |
| 5d9345b | Javier Vegas-Regidor | 19 August 2020, 08:12:29 UTC | Fix installation in WSL (#1789) | 19 August 2020, 08:12:29 UTC |
| fa70b9a | Jaro Camphuijsen | 12 August 2020, 08:39:59 UTC | Add extra steps to diagnostic to make output of hydrology/recipe_lisflood.yml usable by the LISFLOOD model (#1737) * draft of extra steps to make output forcing usable by lisflood * replace draft cube manipulations with iris in diagnostic and process data over global domain in recipe * clean up and turn crop region * loop over coordinates to remove unused coordinates and the bounds of used coordinates * reorder coordinates * change to xarray as sorting variables and coordinates is not possible in iris * fix output file encoding * fix wrong variable name * fix date fetching * Apply suggestions from code review * Automatic formatting Co-authored-by: Peter Kalverla <peter.kalverla@gmx.com> | 12 August 2020, 08:39:59 UTC |
| 837c092 | Bouwe Andela | 05 August 2020, 11:20:26 UTC | Add installation instruction for R and Julia dependencies tot pip install (#1787) * Add installation instruction for R and Julia dependencies * Add autodocsumm for building documentation | 05 August 2020, 11:20:26 UTC |
| e94d60d | Bouwe Andela | 04 August 2020, 07:53:06 UTC | Add pip installation instructions (#1783) | 04 August 2020, 07:53:06 UTC |
| 46efd58 | Bouwe Andela | 03 August 2020, 15:22:38 UTC | Add v2.0.0 release notes (#1781) | 03 August 2020, 15:22:38 UTC |
| ae12069 | Valeriu Predoi | 03 August 2020, 13:48:55 UTC | moved climate statistics operator step after multimodel step in recipe_oceans_example.yml (#1779) * moved clime statistics operator step after multimodel * Comment out multi-model stats * Move back to right position * Update esmvaltool/recipes/recipe_ocean_example.yml Co-authored-by: Mattia Righi <mattia.righi@dlr.de> | 03 August 2020, 13:48:55 UTC |
| 5143e9e | Jaro Camphuijsen | 03 August 2020, 13:41:37 UTC | Documentation on how to find shapefiles for hydrology recipes (#1777) Co-authored-by: SarahAlidoost <55081872+SarahAlidoost@users.noreply.github.com> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 03 August 2020, 13:41:37 UTC |
| b10fdf2 | Mattia Righi | 03 August 2020, 13:18:48 UTC | Exclude WOA from multi-model stats (#1778) | 03 August 2020, 13:18:48 UTC |
| e585ae1 | Bouwe Andela | 03 August 2020, 09:51:06 UTC | Correct date in output filenames of ERA5 CMORizer recipe (#1773) * Add correct date in filenames * Extend check recipe accordingly Co-authored-by: Mattia Righi <mattia.righi@dlr.de> | 03 August 2020, 09:51:06 UTC |
| 346841b | Javier Vegas-Regidor | 03 August 2020, 09:17:15 UTC | Updated docker files (#1651) * Update docker files * Add esmvaltool install command * Upload coverage for regular unit tests Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 03 August 2020, 09:17:15 UTC |
| 6cdf84a | katjaweigel | 03 August 2020, 05:57:18 UTC | Fix extreme events and extreme index ancestors (#1774) * Flatten lists for ancestors in extreme_events/extreme_events.R and magic_bsc/extreme_index.R * magic_bsc/extreme_index.R: character vector instead of list containing character vector. * extreme_events/extreme_events.R: either list or character vector instead of list containing character vector. Co-authored-by: “katjaweigel” <“weigel@iup.physik.uni-bremen.de”> | 03 August 2020, 05:57:18 UTC |
| 1a10e6e | Bouwe Andela | 02 August 2020, 19:18:00 UTC | Update command line interface documentation and add links to ESMValCore configuration documentation (#1776) * Update command line interface and add links to ESMValCore configuration * Add another link to ESMValCore documentation | 02 August 2020, 19:18:00 UTC |
| 3d9238a | Javier Vegas-Regidor | 30 July 2020, 16:09:21 UTC | Fix sispeed in recipe_preprocessor_derive_test (#1772) | 30 July 2020, 16:09:21 UTC |
| 0d611cd | Bouwe Andela | 30 July 2020, 15:18:24 UTC | Add attribute positive: down to plev coordinate (#1771) | 30 July 2020, 15:18:24 UTC |
| c6f9308 | Bouwe Andela | 30 July 2020, 15:15:47 UTC | Fix recipe_correlation.yml (#1767) * Fix crash due to loss of vertical coordinate bounds in extract_levels | 30 July 2020, 15:15:47 UTC |
| 66a4a1d | Bouwe Andela | 30 July 2020, 12:47:53 UTC | Update date conversion in recipe_hype.yml (#1769) | 30 July 2020, 12:47:53 UTC |
| 61e7623 | Bouwe Andela | 30 July 2020, 11:35:25 UTC | Correct mip for clltkisccp (#1768) | 30 July 2020, 11:35:25 UTC |
| 5fb7bfa | Mattia Righi | 29 July 2020, 12:14:00 UTC | Fix AURA-TES cmorizer (#1766) * Fix data reading and variable name * Avoid broken pytest 6.0.0 versions Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 29 July 2020, 12:14:00 UTC |
| 09a9e06 | Mattia Righi | 28 July 2020, 11:49:25 UTC | Allow for incomplete months on daily frequency (#1754) | 28 July 2020, 11:49:25 UTC |
| 0665ca6 | koir-su | 28 July 2020, 06:49:43 UTC | a diagnostic to evaluate the turnover times of land ecosystem carbon (#1395) * a diagnostic to evaluate the turnover times of land ecosystem carbon stock * minor updates of land carbon cycle (recipe_carvalhais2014) * minor edits in land_carbon_cycle(recipe_carvalhais2014) * fully running recipe_carvalhais2014 for CRESCENDO_land_carbon_cycle * changes in handling NorESM resolution data * Fix float division in plot tick placement Depending on the python version, "/" will give a float, even with two int args. This version uses "//" + casting to avoid that problem and reduces some redundancy. * fixing issues with full run * minor fixes in all diagnostic scripts * additional documentation and full run * test compatibility * Move shared code to shared module * Remove dot dict and reformat issues * Simplify recipe * Simplify configuration handling * Refactor zonal turnover calculation to use cubes * Improved documentation * Improved formatting of documentation (see below) - wrapped lines to less than 80 chars - added newline at end of file - removed trailing whitespace * Fix docstring bug * Unified zonal observation handling * handling obs res * update of recipe documentation, clean up of obsolete fig_config, and minor formatting of code * Fix recipe * Fix zonal turnover calculation * Minor formatting issues * Minor formatting issues * Remove left-overs * Minor fixes * Minor formatting * Formatted documentation * Fixed reference link * Fixed math formatting * Fix Obs4MIPs link in documentation * Removed `.. _user settings:` anchor * Corrected tag in recipe * Updated figures of documentation * update on documentation and figures * update on documentation and figures * minor formatting for CI tests * Cleanup * Add provenance information for diag_zonal_turnover * Cleanup * provenance information for diag_zonal_correlation * provenance of diag_global_turnover * cleanup * minor changes in figure titles and labels * incorporate comments from pull request review and update of figures * cleanup for circleci test * circleci test fix * additional codacy checks fix and provenance update * update documentation regarding preprocessed observation at different resolutions * bug fix in location of doc file * fix provenance handling * fix codacy issues * fix generic variable names * fixing and cleaning provenance logging * Fix provenance if no netcdf output is requested * renaming recipe filenames to the standard * Fix recipe name in index * Add a note on data availability * fixing matplotlib issue with global * fix provenance issue with ancestor files Co-authored-by: Sujan Koirala <b301040@mlogin102.hpc.dkrz.de> Co-authored-by: Sujan Koirala <b301040@mlogin108.hpc.dkrz.de> Co-authored-by: Sujan Koirala <b301040@mistralpp2.hpc.dkrz.de> Co-authored-by: Klaus Zimmermann <klaus.zimmermann@smhi.se> Co-authored-by: Sujan Koirala <b301040@mlogin100.hpc.dkrz.de> Co-authored-by: Sujan Koirala <b301040@mlogin105.hpc.dkrz.de> Co-authored-by: koir-su <b301040@mlogin103.hpc.dkrz.de> Co-authored-by: koir-su <b301040@mlogin104.hpc.dkrz.de> Co-authored-by: koir-su <b301040@mlogin101.hpc.dkrz.de> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> Co-authored-by: Mattia Righi <mattia.righi@dlr.de> | 28 July 2020, 06:49:43 UTC |
| 414ef7a | Manuel Schlund | 27 July 2020, 15:22:53 UTC | Added additional emergent constraints on ECS (#1585) * Added additional emergent constraints on ECS * Added missing reference * Simplified LTMI calculation using S and D functinos * Fixed codacy issue * Fixed parallel calculation of pressure level widths * Added additional emergent constraints on ECS * Added missing reference * Simplified LTMI calculation using S and D functinos * Fixed codacy issue * Fixed parallel calculation of pressure level widths * Moved additional data from external file to recipe * Add #ESMValTool to header * Fix import path * Fix imports Co-authored-by: Mattia Righi <mattia.righi@dlr.de> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 27 July 2020, 15:22:53 UTC |
| df9d705 | Tomas Lovato | 24 July 2020, 10:02:01 UTC | fix bug in cmorize_obs_eppley_vgpm_modis.py (#1729) (#1759) * fix bug in cmorize_obs_eppley_vgpm_modis.py (#1729). Added pynio as a dependency. Co-authored-by: Mattia Righi <mattia.righi@dlr.de> Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 24 July 2020, 10:02:01 UTC |
| cf675d3 | Tomas Lovato | 23 July 2020, 19:29:06 UTC | add standard_name attribute to lon and lat in cmorize_obs_esacci_oc.py (#1760) | 23 July 2020, 19:29:06 UTC |
| 28c1002 | Bouwe Andela | 23 July 2020, 15:10:38 UTC | Read authors and description from ".zenodo.json" (#1758) | 23 July 2020, 15:10:38 UTC |
| a44254f | Mattia Righi | 23 July 2020, 14:55:41 UTC | Update job script (#1757) * Update job script for DKRZ * Remove unused script for CLUSTER * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Update esmvaltool/utils/batch-jobs/job_DKRZ-MISTRAL.sh * Set environment properly | 23 July 2020, 14:55:41 UTC |
| 28e4c3c | Bouwe Andela | 23 July 2020, 14:18:29 UTC | Increase version to v2.0.0 (#1756) | 23 July 2020, 14:18:29 UTC |
| 4ef6ffa | SarahAlidoost | 23 July 2020, 13:43:37 UTC | Improve description of how to implement provenance in diagnostic (#1750) Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 23 July 2020, 13:43:37 UTC |
| 63d713f | katjaweigel | 23 July 2020, 13:41:15 UTC | Flatten lists for ancestors for hyint to prevent nested lists. (#1752) * Flatten lists for ancestors to prevent nested lists. * Bug fix, runs now for me, please check! Co-authored-by: “katjaweigel” <“weigel@iup.physik.uni-bremen.de”> | 23 July 2020, 13:41:15 UTC |
| c2a3a6f | Javier Vegas-Regidor | 23 July 2020, 08:29:58 UTC | Add colortables as esmvaltool subcommand (#1666) | 23 July 2020, 08:29:58 UTC |
| 0e138a7 | Javier Vegas-Regidor | 23 July 2020, 07:45:40 UTC | Fix dim names in weather_regime.R (#1753) | 23 July 2020, 07:45:40 UTC |
| 0c8558c | Mattia Righi | 22 July 2020, 15:09:54 UTC | Exclude FGOALS-g2 due to ESMValCore issue #728 (#1749) | 22 July 2020, 15:09:54 UTC |
| 19a4629 | Valeriu Predoi | 22 July 2020, 15:01:30 UTC | Improve the installation instructions (#1634) * added some improvements to the install instructions Co-authored-by: Niels Drost <n.drost@esciencecenter.nl> | 22 July 2020, 15:01:30 UTC |
| 00b5fb4 | Axel Lauer | 22 July 2020, 14:07:00 UTC | IPCC AR5 fig. 9.3 (seasonality) (#1726) * v2 implementation of IPCC AR5 fig 9.3 (seasonality) * fixed NCL codestyle issues * Update recipe_flato13ipcc.rst * correction of flato13ipcc docu (fig. 9.4) Co-authored-by: Mattia Righi <mattia.righi@dlr.de> | 22 July 2020, 14:07:00 UTC |
| f95484e | Javier Vegas-Regidor | 22 July 2020, 11:07:45 UTC | Fix provenance in recipe_multimodel_products (#1747) | 22 July 2020, 11:07:45 UTC |
| cfc1bca | Javier Vegas-Regidor | 22 July 2020, 10:50:23 UTC | Fix provenance (#1746) | 22 July 2020, 10:50:23 UTC |
| 74fe96f | Mattia Righi | 22 July 2020, 09:32:04 UTC | Cleanup recipe headers before the release (#1740) * Clean recipe headers * Rename to filenaming standard * Update esmvaltool/recipes/recipe_albedolandcover.yml * Fix reference tag * Update esmvaltool/recipes/recipe_albedolandcover.yml Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> * Fix reference tag Co-authored-by: Bouwe Andela <b.andela@esciencecenter.nl> | 22 July 2020, 09:32:04 UTC |
| 43cfb16 | bascrezee | 22 July 2020, 09:01:42 UTC | Add mask albedolandcover (#1673) * added masking of non-physical albedo values * beginning of standard error estimates * take out the SE estimates part, since it is incomplete * Fix style issue Co-authored-by: Mattia Righi <mattia.righi@dlr.de> | 22 July 2020, 09:01:42 UTC |
| 6a5546d | Mattia Righi | 22 July 2020, 08:59:56 UTC | Fix linspace arguments (#1744) | 22 July 2020, 08:59:56 UTC |
| 4525729 | katjaweigel | 22 July 2020, 07:36:24 UTC | Flatten ancestor lists for diag_spei.R and diag_spi.R. (#1745) Co-authored-by: “katjaweigel” <“weigel@iup.physik.uni-bremen.de”> | 22 July 2020, 07:36:24 UTC |
| 1d8e145 | Bouwe Andela | 22 July 2020, 07:27:36 UTC | Update setup.py for PyPI package (#1700) Exclude doc, tests, and hidden files from package | 22 July 2020, 07:27:36 UTC |
