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18836f3 Oksana Guba 01 October 2021, 17:53:53 UTC Merge branch 'AMB/ambrad/homme/sl-gpu' into master (PR #4465) This PR brings in two major features: - Semi-Lagrangian tracer transport supports both the F90 theta-l and C++/Kokkos theta-l_kokkos dycores; thus, the second supports SCREAM. The first is at performance parity with master. - Physgrid remap supports both EAM and SCREAM. Again, the first is at performance parity with master. A minor new feature is SL transport supports doubly-periodic planar geometry. This PR also has new tests: - 6 new standalone Homme tests: ne2 and ne6 theta-l vs theta-l_kokkos with SL; - 2 new unit tests: gllfvremap_ut for physgrid remap and compose_ut for SL transport. Finally, this PR makes four unit tests run in standalone Homme optimized builds: gllfvremap_ut, compose_ut, limiters_ut, dirk_ut. [BFB] for EAM. BFB for standalone Homme except: (1) 8 new standalone Homme tests, (2) thetah-sl-dcmip16_test1pg2 in the BFB build, and (3) all three thetah-sl tests in the optimized build. 01 October 2021, 17:53:53 UTC
19f5dac Andrew M. Bradley 01 October 2021, 07:00:22 UTC Hommexx/SL: Make compose_ut use just one proc. 01 October 2021, 07:00:22 UTC
2a3f892 Andrew M. Bradley 30 September 2021, 08:15:49 UTC Hommexx: Fix various warnings. 30 September 2021, 08:16:39 UTC
26f4cb4 Andrew M. Bradley 30 September 2021, 06:12:43 UTC Hommexx: Fix limiters_ut in non-BFB standalone test. There was still a case of 'equal' with a tol of 0, but the tol must be non-0 in the non-BFB build. 30 September 2021, 06:12:43 UTC
396e852 Andrew M. Bradley 30 September 2021, 05:34:50 UTC Hommexx: Fix some SL and GllFvRemap issues. Fix more HOMMEXX_CUDA_SHARE_BUFFER m_... issues. Also fix a C++17 static_assert so that it's C++11 compliant. 30 September 2021, 05:34:50 UTC
1b90a6e Andrew M. Bradley 30 September 2021, 04:31:11 UTC Merge upstream/master 30 September 2021, 04:31:11 UTC
241ce8a Andrew M. Bradley 30 September 2021, 04:21:58 UTC Hommexx/SL: Fix an implicit capture of 'this'. The implicit capture of 'this' would be a problem in Hommexx builds with HOMMEXX_CUDA_SHARE_BUFFER enabled. 30 September 2021, 04:21:58 UTC
8ce8b97 Benjamin R. Hillman 29 September 2021, 20:50:30 UTC Merge branch 'whannah/mmf/switch-to-L60' (#4485) This includes several major changes to the default MMF configuration, with the primary motivation to improve performance. Recent MMF runs achieved over 5 sypd on Summit, which relied heavily on changes in PRs #4333 and #4476 and the changes in this PR. The configuration changes that allow this enhanced throughput are as follows: - thicker vertical grid spacing near the surface with new L60 vertical grid (with 50 CRM levels) - increased CRM time step (5 to 10 sec) - increased CRM horizontal grid spacing (1 to 2km) - reduced number of radiative columns (16 to 4) [non-BFB] (only for MMF) Conflicts: components/eam/cime_config/config_component.xml 29 September 2021, 20:50:30 UTC
50e4973 Jon Wolfe 29 September 2021, 20:15:14 UTC Merge branch 'maltrud/ocean/add-cfc-tracers' (PR #4552) Add CFC11, CFC12 tracers This PR adds the capability for the ocean to simulate CFC11 and CFC12 as passive tracers following the OCMIP protocol. This capability is inactive by default and requires a time series of annual average atmospheric mole fractions to be read in as a new stream in streams.ocean. [NML] [BFB] 29 September 2021, 20:15:14 UTC
1e754ed Robert Jacob 29 September 2021, 16:26:30 UTC Merge branch 'rljacob/docs/update-v2' (PR #4566) Update README, LICENSE and CONTRIBUTING for v2. The DOI for v2 is reserved and won't be active until after the tag is made. Fixes #4134 29 September 2021, 16:26:30 UTC
403bdf4 Robert Jacob 29 September 2021, 01:38:05 UTC Split up CIME CIME was split up so make LICENSE reflect that. 29 September 2021, 01:38:05 UTC
1a547c5 Robert Jacob 29 September 2021, 00:17:41 UTC Fix a few items in LICENSE Also make it more clear what the list of Institutions at the bottom is for. 29 September 2021, 00:17:41 UTC
a4386dc Robert Jacob 29 September 2021, 00:04:18 UTC Fix a few more words on README Fix a few more words on README 29 September 2021, 00:04:18 UTC
af31a9c Robert Jacob 28 September 2021, 21:58:50 UTC Few more README fixes Few more README fixes 28 September 2021, 21:58:50 UTC
b7559c6 Robert Jacob 28 September 2021, 19:38:17 UTC Update README for v2 Update the README using the reserved DOI for v2. Also point to Confluence documentation and github discussions. 28 September 2021, 19:38:17 UTC
b5428d9 Robert Jacob 28 September 2021, 19:37:17 UTC A few updates to CONTRIBUTING A few minor wording updates to CONTRIBUTING 28 September 2021, 19:37:17 UTC
b91eb73 Robert Jacob 28 September 2021, 19:15:31 UTC Update LICENSE Update paths to seperable components and mention new ones. 28 September 2021, 19:15:31 UTC
52cd483 Mark Petersen 28 September 2021, 19:01:20 UTC white space cleanup 28 September 2021, 19:01:20 UTC
b1909c0 Robert Jacob 28 September 2021, 15:55:20 UTC Merge branch 'worleyph/driver-mct/add_io-related_timers2' (PR #4561) SCORPIO has introduced some new timers. Unfortunately, the existing timers in driver-mct are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. While 25 new timers are introduced, in normal usage only 7 to 11 new timers appear in the timing files. Four existing timers were renamed in order to add a CPL prefix: comp_init_cc_iac => CPL:comp_init_cc_iac driver_rofpost_histaux => CPL:seq_hist_writeaux-r2x DRIVER_ROFPOST_BARRIER => CPL:ROFPOST_BARRIER DRIVER_ROFPOST => CPL:ROFPOST Two existing timers were renamed to eliminate collisions from the previous renamings: CPL:ROFPOST_BARRIER => CPL:ROFRUNPOST_BARRIER CPL:ROFPOST => CPL:ROFRUNPOST Fixes #4522 [BFB] 28 September 2021, 15:55:20 UTC
4735cee Robert Jacob 28 September 2021, 15:50:54 UTC Merge branch 'rljacob/cime/update-sep-27' (PR #4564) Update cime to master version 80220601778 post cime6.0.9 tag E3SM-relevant changes Fix PGN and TSC tests Allow E3SM to use cmake macros instead of config_compilers (not yet active) Fix scripts_regression_tests on mappy for e3sm Other changes: Adds a container machine definition for CESM update modules and build flags on cori for CESM if nuopc and any datamodel add a cdeps directory [BFB] 28 September 2021, 15:50:54 UTC
6a6f819 Jon Wolfe 28 September 2021, 14:49:29 UTC Merge branch 'mark-petersen/ocean/conservation-am' (PR #4521) Add ocean conservation analysis member This analysis member conducts internal checks on conservation of heat, salinity, and mass (volume), to ensure that changes within the domain are consistent with the sum of boundary fluxes. [NML] [BFB] 28 September 2021, 14:49:29 UTC
2944aaa Robert Jacob 27 September 2021, 22:51:09 UTC Update CIME to 80220601778 Update cime to master version 80220601778 post cime6.0.9 Fix PGN and TSC tests Allow E3SM to use cmake macros instead of config_compilers. Fix scripts_regression_tests on mappy for e3sm 27 September 2021, 22:51:09 UTC
bac74e2 Patrick Worley 27 September 2021, 11:05:03 UTC Add timers to driver-mct to provide context to SCORPIO timers SCORPIO has introduced some new timers. Unfortunately, the existing timers in driver-mct are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. While 25 new timers are introduced, in normal usage only 7 to 11 new timers appear in the timing files. Four existing timers were renamed in order to add a CPL prefix: comp_init_cc_iac => CPL:comp_init_cc_iac driver_rofpost_histaux => CPL:seq_hist_writeaux-r2x DRIVER_ROFPOST_BARRIER => CPL:ROFPOST_BARRIER DRIVER_ROFPOST => CPL:ROFPOST Two existing timers were renamed to eliminate collisions from the previous renamings: CPL:ROFPOST_BARRIER => CPL:ROFRUNPOST_BARRIER CPL:ROFPOST => CPL:ROFRUNPOST [BFB] 27 September 2021, 11:05:03 UTC
c6d640f Min Xu 25 September 2021, 00:11:07 UTC Merge branch 'minxu74/summit/upd_softenv_compilers' (PR #4502) After recent Summit update, some old versions of the software environment and compilers have been removed. So this PR is to update them to the new default versions or versions that have been tested on Summit. Main updates include: - update PGI to nvhpc/21.3 - update GNU to 9.1.0 - update IBM to 16.1.1-10 - update spectrum-mpi to 10.4.0.3-20210112 - update the '--nrs' parameter for scm. Thanks Azamat. There are still some failed tests for three compilers on Summit, especially for nvhpc. They will be fixed in other PRs. 25 September 2021, 00:11:07 UTC
7d16a5b Mark Petersen 23 September 2021, 20:53:15 UTC white space cleanup 23 September 2021, 20:53:15 UTC
5bfdef4 Mark Petersen 23 September 2021, 20:31:08 UTC Set E3SM default config_AM_conservationCheck_enable false 23 September 2021, 20:31:08 UTC
fe6876f Mark Petersen 13 September 2021, 16:59:40 UTC Update to tabular output, add E3SM earth radius 23 September 2021, 18:34:52 UTC
0881be9 mark-petersen 07 July 2021, 00:57:19 UTC Add landIce, iceberg, temperature variables 23 September 2021, 17:58:38 UTC
3ad895a Mark Petersen 06 July 2021, 21:59:22 UTC Add E3SM default namelist 23 September 2021, 17:58:38 UTC
bcb164c Mark Petersen 06 July 2021, 12:10:28 UTC Add MPAS-Ocean conservation check analysis member 23 September 2021, 17:58:38 UTC
83a6073 noel 23 September 2021, 17:29:41 UTC Merge E3SM-Project/ndk/machinefiles/cori-update-cmake2 (PR #4550) For Cori, update cmake module version 23 September 2021, 17:29:41 UTC
9bec1ac Azamat Mametjanov 23 September 2021, 15:25:59 UTC Merge branch 'azamat/anvil/update-v2-lores-wc-pelayouts' (PR #4556) Update low-res WC pelayouts on Anvil. Also add a pelayout for conusx4v1_r05_oECv3 + F2010. [BFB] 23 September 2021, 15:25:59 UTC
b2728bb Mark Petersen 23 September 2021, 13:54:07 UTC Add CFC to Makefile 23 September 2021, 13:54:07 UTC
7a2fd6c Azamat Mametjanov 22 September 2021, 23:33:46 UTC Update low-res WC pelayouts on Anvil Also add a pelayout for conusx4v1_r05_oECv3 + F2010 22 September 2021, 23:33:46 UTC
95543b2 Mathew Maltrud 22 September 2021, 20:45:58 UTC corrected units to mol/m3 for CFC fields 22 September 2021, 20:45:58 UTC
6400da0 Mathew Maltrud 22 September 2021, 20:20:15 UTC add CFC11, CFC12 tracers 22 September 2021, 20:20:15 UTC
b1c7832 Jon Wolfe 22 September 2021, 15:21:15 UTC Merge branch 'akturner/seaice/ridging-1D-testcase' (PR #4525) Added 1D ridging sea ice test case Updates to mpassi to include: * Add 1D ridging test case * New ridging init option * Allow special boundaries to set tracers * Fix test case locations in scripts * Update .gitignore for mpas-seaice * Rename config_use_special_boundaries_zero_tracers to config_use_special_boundaries_tracers [NML] [BFB] 22 September 2021, 15:21:15 UTC
fc3a10c Balwinder Singh 22 September 2021, 04:01:09 UTC Merge branch 'singhbalwinder/machinefiles/contance-intel1905' (PR #4530) Updates Intel's compiler version of PNNL cluster Constance Constance now uses Intel/19.0.5 [BFB] * singhbalwinder/machinefiles/contance-intel1905: Adds LD_LIBRARY_PATH for gcc compiler Modifies Intel version from 15 to 19.0.5 22 September 2021, 04:01:09 UTC
09aff51 noel 21 September 2021, 23:21:56 UTC for cori, update cmake version 21 September 2021, 23:21:56 UTC
995c3ec Robert Jacob 21 September 2021, 16:32:43 UTC Merge branch 'whannah/atm/remove-se_fv_nphys' (PR #4545) se_fv_nphys is an old variable from the original physgrid implementation that is no longer needed. [BFB] 21 September 2021, 16:32:43 UTC
7e705ac Robert Jacob 21 September 2021, 16:31:03 UTC Merge branch 'rljacob/coupler/fix-hist-write' (PR #4544) Move the auxilary history writes to the cime_run_write_history routine and remove the duplicate regular history write from cime_run. Add one argument to cime_run_write_history Fixes #4519 [BFB] 21 September 2021, 16:31:03 UTC
63710df Jon Wolfe 21 September 2021, 14:45:36 UTC Merge branch 'maltrud/ocean/add-ideal-age' (PR #4487) Add ideal age tracer Add classic ideal age as a new passive tracer to the ocean, which is used to help trace ocean ventilation, for example. The tracer source is effectively just an increment of dt, and the surface value is reset to zero in the top layer every timestep (except for under ice shelves). This feature is turned off by default. [NML] [BFB] 21 September 2021, 14:45:36 UTC
1c57f1b Peter Schwartz 20 September 2021, 18:23:49 UTC Merge branch 'bishtgautam/lnd/fix-water-budget' (PR #4536) The water states are set to zero for budgets with following temporal resolution: instantaneous daily monthly annual [BFB] 20 September 2021, 18:23:49 UTC
3fd22a0 Peter Schwartz 20 September 2021, 18:22:57 UTC Merge branch 'fmyuan/fix_shr_file_freeUnit'(PR #4400) When code building with -DCPL_BYPASS, an option heavily used by ELM modelers, that '#ifndef ... #endif' causes 'mlog' and 'c_mprof_file' not initialized, and later cause unit free error in cime_final(): L3685-3686. [BFB] 20 September 2021, 18:22:57 UTC
673c20f Walter Hannah 17 September 2021, 21:46:34 UTC remove se_fv_nphys modified: components/eam/bld/build-namelist modified: components/eam/bld/namelist_files/namelist_definition.xml 17 September 2021, 21:46:34 UTC
812d1f6 Balwinder Singh 17 September 2021, 20:13:10 UTC Merge branch 'worleyph/eam/add_io-related_timers' (PR #4500) Add timers to EAM to provide context to SCORPIO timers SCORPIO has introduced some new timers. Unfortunately, the existing timers in EAM are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. The logic for the timer physpkg_st1 is also changed, so that the count during the initialization is '1' instead of '2', and the count is halved in the run loop. Also, some places have timer names in double quotes in calls to t_startf/t_stopf and some have them in single quotes. Changed double quotes to single quotes in some files, to impose consistency within the file. Finally, a timer name typo (prim_run_sybcycle) is corrected (to prim_run_subcycle). For an initial run, 28 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 41 more lines of timer data after implementing these modifications, in agreement with the new timer count. For a continuation run, 30 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 43 more lines of timer data after implementing these modifications, in agreement with the new timer count. Fixes #4469 BFB * worleyph/eam/add_io-related_timers: Add timers to EAM to provide context to SCORPIO timers 17 September 2021, 20:13:10 UTC
e8d2c08 Walter Hannah 17 September 2021, 17:52:13 UTC update initial conditions file names modified: components/eam/bld/namelist_files/namelist_defaults_eam.xml 17 September 2021, 17:52:13 UTC
63d9136 Walter Hannah 17 September 2021, 17:26:01 UTC revert grid domain fix 17 September 2021, 17:26:01 UTC
4707fc0 Walter Hannah 17 September 2021, 17:25:10 UTC remove temporary land spinup files modified: components/elm/bld/namelist_files/namelist_defaults.xml 17 September 2021, 17:25:10 UTC
20d6e0e Walter Hannah 17 September 2021, 17:21:13 UTC fix mask for e120pg2_ne120pg2 for domain file error modified: cime_config/config_grids.xml 17 September 2021, 17:21:13 UTC
416f203 Jon Wolfe 17 September 2021, 15:20:44 UTC Merge branch 'jonbob/scripts/fix-fcase-layout-anvil' (PR #4541) Change default layout for ne30pg2_oECv3 F-cases on anvil Sets a default 288-pe layout for F-cases on anvil using a ne30pg2_oECv3 grid (or ne30pg2_r05_oECv3). Previously there was not a defined layout for these configurations and they ended up using a basic 144-pe layout that fails testing, probably due to memory issues. Fixes #4538 [BFB] 17 September 2021, 15:20:44 UTC
95ea11c Wuyin Lin 17 September 2021, 13:45:13 UTC Merge branch 'wlin/lnd/update_simyr2010_fsurdat_ne30pg2_ne1024pg2' (PR #4543) Update simyr2010 lnd surfdata map for ne30pg2 and ne1024pg2 master currently has a simyr2000 surfdata for ne30pg2. The one for ne1024pg2 (c210607) was generated involving some mapping files that do not properly handle land-sea masks. The new surfdata for ne30pg2 includes elevation class information. [BFB] no nightly tests are affected. 17 September 2021, 13:45:13 UTC
ce79d7b Andrew M. Bradley 16 September 2021, 22:19:52 UTC merge upstream to get CircleCI fix 16 September 2021, 22:19:52 UTC
75f269b Wuyin Lin 16 September 2021, 16:14:22 UTC Change fsurdat for simyr2010 ne30pg2 to one with elevation class info. 16 September 2021, 16:14:22 UTC
d478152 Patrick Worley 28 August 2021, 18:22:10 UTC Add timers to EAM to provide context to SCORPIO timers SCORPIO has introduced some new timers. Unfortunately, the existing timers in EAM are not sufficient to localize where the SCORPIO calls are coming from. Here new timers are added to provide the missing context. A few timers are also added to provide context for these added timers and for some of the already existing timers. The logic for the timer physpkg_st1 is also changed, so that the count during the initialization is '1' instead of '2', and the count is halved in the run loop. Also, some places have timer names in double quotes in calls to t_startf/t_stopf and some have them in single quotes. Changed double quotes to single quotes in some files, to impose consistency within the file. Finally, a timer name typo (prim_run_sybcycle) is corrected (to prim_run_subcycle). For an initial run, 28 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 41 more lines of timer data after implementing these modifications, in agreement with the new timer count. For a continuation run, 30 new timers are introduced into the initialization and 13 new timers are introduced into the run loop. Comparing the number of lines in the process 0 timing file for a watercycle case, there are 43 more lines of timer data after implementing these modifications, in agreement with the new timer count. BFB 16 September 2021, 05:03:12 UTC
09f764b Robert Jacob 16 September 2021, 03:44:21 UTC Remove extra history write and reorg Move the auxilary history writes to the cime_run_write_history routine and remove the duplicate regular history write from cime_run. Add one argument to cime_run_write_history 16 September 2021, 03:44:21 UTC
d44001a Andrew M. Bradley 16 September 2021, 02:59:29 UTC Fix narrowing error again. 16 September 2021, 02:59:29 UTC
98f71e8 Andrew M. Bradley 16 September 2021, 02:58:12 UTC Fix another narrowing error in gcc 9.3. 16 September 2021, 02:58:12 UTC
05e91a5 Andrew M. Bradley 16 September 2021, 01:18:45 UTC More fixes for the eam-hommexx test. 16 September 2021, 01:18:45 UTC
febf20a Andrew M. Bradley 16 September 2021, 00:50:12 UTC More fixes for the eam-hommexx test. 16 September 2021, 00:50:12 UTC
a0ffef5 Wuyin Lin 16 September 2021, 00:45:54 UTC Update simyr2010 lnd surfdata map for ne30pg2 and ne1024pg2 master currently has a simyr2000 surfdata for ne30pg2. The one for ne1024pg2 (c210607) was generated involving some mapping files that do not properly handle land-sea masks. [BFB] no nightly tests are affected. 16 September 2021, 00:45:54 UTC
7287f59 Andrew M. Bradley 16 September 2021, 00:06:23 UTC Another fix for the eam-hommexx test. 16 September 2021, 00:06:23 UTC
cdb5c68 Andrew M. Bradley 15 September 2021, 23:51:22 UTC Fix eam-hommexx test. The CIME eam-hommexx test checks that a Kokkos-based build works. Right now it uses preqx_kokkos. Perhaps in the future we should switch it to theta-l_kokkos. For now, add -DHOMME_ENABLE_COMPOSE when building preqx_kokkos. 15 September 2021, 23:51:22 UTC
5fd719e Andrew M. Bradley 15 September 2021, 23:37:20 UTC Homme/SL: Fix a narrowing warning. 15 September 2021, 23:37:20 UTC
74d8bf3 Robert Jacob 15 September 2021, 21:32:18 UTC Merge branch 'origin/wlin/lnd/ne1024pg2_oRRS18to6v3' (PR #4322) This is to support land on ne1024pg2 grid as the atmosphere. River model for this grid configuration continues to use r0125. Land restart file at ne1024pg2 has to use 64bit_data format. To enable, Changes are made to have ELM use the netcdf format as specified via PIO_LND_NETCDF_FORMAT. Existing codes are hardwired to use 64BIT_OFFSET. To support creating large land files at ne1024pg2, mainly restart files, changes are also made to use 8-byte long integer for resolving the fullsize of the data array and indexing the associated segments. Fixes #4311. [BFB] Conflicts: components/elm/bld/namelist_files/namelist_defaults.xml Left it as is on current master: <fsurdat hgrid="ne30np4.pg2" sim_year="2010" use_crop=".false." > lnd/clm2/surfdata_map/surfdata_ne30pg2_simyr2000_c210402.nc</fsurdat 15 September 2021, 21:32:18 UTC
44d5343 Robert Jacob 15 September 2021, 21:03:46 UTC Merge branch 'rljacob/fix-extra-read' (PR #4523) Make drv_resume a logical and set it to FALSE to prevent read of restart immediately after it is written. Introduce drv_resume_file to use where a filename is really needed. Also add a log message for the real restart read and make the seq_io_read_avs log messages more informative. Fixes #4513 15 September 2021, 21:03:46 UTC
680303b Jon Wolfe 15 September 2021, 18:25:53 UTC Change default layout for ne30pg2_oECv3 F-cases on anvil 15 September 2021, 18:25:53 UTC
2a9c4b6 Mark Petersen 08 September 2021, 16:01:08 UTC Move halo update after ideal age reset 15 September 2021, 15:29:52 UTC
c5e39b9 Mark Petersen 08 September 2021, 14:22:37 UTC Corrections after Maltrud comments. 15 September 2021, 15:29:52 UTC
51b267d Mark Petersen 05 September 2021, 04:38:06 UTC Correction to halo update 15 September 2021, 15:29:52 UTC
8785356 Mathew Maltrud 01 September 2021, 15:16:55 UTC Check for ideal age flags 15 September 2021, 15:29:51 UTC
33045aa Mathew Maltrud 31 August 2021, 20:40:02 UTC corrected top layer tend and default forcing option 15 September 2021, 15:29:51 UTC
8c3f5fc Mathew Maltrud 23 August 2021, 16:44:16 UTC add ideal age tracer 15 September 2021, 15:29:51 UTC
5341618 Jon Wolfe 15 September 2021, 14:55:46 UTC Merge branch 'mark-petersen/ocn/fix-diagnostics-landIceFraction' (PR #4518) Add land ice logical to avoid allocation errors Use of land ice variables, which are in packages and may not be allocated, were not protected by if statements. Fixes #4517 [BFB] 15 September 2021, 14:55:46 UTC
24bb118 Robert Jacob 14 September 2021, 23:32:12 UTC Merge branch 'rljacob/circleci/fix-compset' (PR #4539) Remove the "A_" from the compset used in the build test to match new v2 standards. [BFB] 14 September 2021, 23:32:12 UTC
6e163cf Robert Jacob 14 September 2021, 23:00:10 UTC Change compset name to build Remove the "A_" from the compset name to match new v2 standards. 14 September 2021, 23:00:10 UTC
4062f2a Andrew M. Bradley 14 September 2021, 18:27:03 UTC merge 091421 master into branch 14 September 2021, 18:27:03 UTC
5955023 Gautam Bisht 14 September 2021, 13:47:20 UTC Corrects the initial states for water budgets The water states are set to zero for budgets with following temporal resolution: - instantaneous - daily - monthly - annual [BFB] 14 September 2021, 14:35:28 UTC
c85d9f7 Wuyin Lin 14 September 2021, 12:29:47 UTC Merge branch 'wlin/atm/fix_conusx4v1_f2010' (PR #4535) Reset grid and compset for F2010 tests with RRM The existing bi-grid config for RRM test cannot work with MPASSI. For conusx4v1, continue to use F2010 but changed to use tri-grid conusx4v1_r05_oECv3. For enax4v1 and twpx4v1, continue to use bi-grid but changed compset to F2010-CICE. The current arrangement is based on availability of grid for using MPASSI and the inputdata. [BFB] except for new test with conusx4v1_r05_oECv3 14 September 2021, 12:29:47 UTC
4e12683 Wuyin Lin 14 September 2021, 00:32:21 UTC Reset grid and compset for F2010 tests with RRM Continue to use F2010 for conusx4v1 but changed to use tri-grid conusx4v1_r05_oECv3. For enax4v1 and twpx4v1, continue to use bi-grid but changed compset to F2010-CICE. The current arrangement is based on availability of grid for using MPASSI and the inputdata. [BFB] except for new test with conusx4v1_r05_oECv3 14 September 2021, 00:32:21 UTC
f377571 Andrew M. Bradley 13 September 2021, 23:45:51 UTC Homme/SL: Remove more constexpr usage. 13 September 2021, 23:45:51 UTC
8b6ec26 Andrew M. Bradley 13 September 2021, 23:28:47 UTC Homme/SL: Rm constexpr usage on GPU for simplicity. 13 September 2021, 23:28:47 UTC
1a02264 Wuyin Lin 13 September 2021, 16:41:43 UTC Merge branch 'wlin/atm/cleanup_v2compsets_for_tests' (PR #4488) Update and clean-up compsets for use in test suites Remove obsolete eam and allactive compsets and the associated eam use_case files, and update the compsets used in nightly test suites. All compsets referring to AV1C or v0atm are removed. F20TRC5-CMIP6 and F2010SC5-CMIP6 are no more needed (previously retained for ongoing testings). Remaining use case files referring to av1c are removed, including those used by MMF tests. Also Remove obsolete use_case files referring to cam3 and cam4 . This PR also makes all standard F-cases use prescribed data ice mode of MPASSI. This includes F1850, F1950, F2010, F20TR. The corresponding compsets that use CICE are renamed as F1850-CICE, F1950-CICE, F2010-CICE, and F20TR-CICE, respecticely. The F####-CICE compsets set to go with SROF while the MPASSI counterparts with MOSART as river component. The following compsets are replaced in nightly test suites. . FC5AV1C-L with F2010 . A_WCYCL1850 and A_WCYCL1850S_CMIP6 with WCYCL1850 . FC5AV1C-H01A with F2010 as there is no v2 compset just for hires . A_WCYCL1950S_CMIP6_HR and A_WCYCL2000_H01AS with WCYCL1950 as a placeholder With compset changes and the use of MPASSI data ice mode, F2010 tests using ne4_ne4 change to use ne4_oQU240, and ne4pg2_ne4pg2 to ne4pg2_oQU480; F2010 tests with ERS_Ln# and ERP_Ln# change to use ERS_Ld3. [non-BFB] Virtually for all tests involving the compsets above. Tests using the old compsets would appear missing while new tests would appear correspondingly. 13 September 2021, 16:41:43 UTC
7d6fa20 Wuyin Lin 12 September 2021, 02:21:26 UTC Replaced F2010 ERP_Ln# tests with ERP_Ld3 12 September 2021, 02:21:26 UTC
423d109 Balwinder Singh 11 September 2021, 07:21:16 UTC Adds LD_LIBRARY_PATH for gcc compiler 11 September 2021, 07:21:16 UTC
c06d4ce Benjamin R. Hillman 10 September 2021, 19:33:30 UTC Remove cam4 use cases files 10 September 2021, 20:52:33 UTC
66318c3 Benjamin R. Hillman 10 September 2021, 19:12:13 UTC Remove some unused use cases 10 September 2021, 19:12:13 UTC
6dba9f4 Benjamin R. Hillman 10 September 2021, 18:57:05 UTC Update MMF F-cases to F2010 10 September 2021, 18:57:05 UTC
0f5c969 Benjamin R. Hillman 10 September 2021, 18:56:38 UTC Update MMF use case files for 2010 forcings 10 September 2021, 18:56:38 UTC
31c32e4 Robert Jacob 10 September 2021, 03:04:11 UTC Fix whitespace/alignment Fix some whitespace/alignment on a couple of lines. 10 September 2021, 03:04:11 UTC
2ee5845 Benjamin R. Hillman 09 September 2021, 18:31:34 UTC Merge branch 'whannah/mmf/push-chunk-loop-crm-physics' (#4476) This refactors the way the CRM is called so that all CRM instances in a single task can be run at once on the GPU, rather than all CRMs in a given "chunk". On properly configured GPU cases the speedup from this change is significant, and there is no notable change to CPU configurations tested on Summit and Cori-KNL. The changes required to push the chunk loop down are quite substantial, but there were additional complications from the crm_history() subroutine and the crm_rad and crm_ecpp_output data structures that required more extensive changes. A new "ncrms" variable is defined in crm_physics to define the dimension of variables that hold all CRMs in a task (i.e. combined across all chunks in a task). Note about testing - the changes are non-BFB for MMF tests only because the grouping of CRM columns has changed, which changes the the time step and sedimentation subcycling. Otherwise the changes are BFB, which can be demonstrated using the mmf_fixed_subcycle test mod. [BFB] - except for MMF tests without mmf_fixed_subcycle test mod 09 September 2021, 18:31:34 UTC
f2f1eba Robert Jacob 09 September 2021, 17:52:25 UTC Merge branch lukaszlacinski/lukaszlacinski/circleci (PR #4528) This PR removes a bug that was introduced with the last PR that added a backup HTTP server with the Singularity source code tarball. 09 September 2021, 17:52:25 UTC
9a5dab5 James Foucar 09 September 2021, 17:08:37 UTC Merge branch 'jgfouca/fix_cimeroots' into master (PR #4526) Fix CIMEROOTs for buildnml scripts It looks like these did not get updated when the scripts moved to E3SM. Also, remove old python module load from mappy env. [BFB] * jgfouca/fix_cimeroots: Undo cime subm update Fix some stale CMake paths Fix CIMEROOTs for buildnml scripts 09 September 2021, 17:08:37 UTC
e0d6219 Wuyin Lin 09 September 2021, 16:17:42 UTC Removed gust_export testmod dir 09 September 2021, 16:17:42 UTC
a120bae Wuyin Lin 09 September 2021, 16:12:58 UTC Fixed F2010 ERS tests on ne4 and ne4pg2 with _Ln# replaced with _Ld3 09 September 2021, 16:12:58 UTC
52167a2 lukaszlacinski 09 September 2021, 16:11:05 UTC Fix the CircleCI script that installs Singularity 09 September 2021, 16:11:05 UTC
f47bb19 Jon Wolfe 09 September 2021, 15:49:38 UTC Merge branch 'proteanplanet/seaice/v2cryoalignment' (PR #4524) Align sea ice settings of SOwISC12to60E2 and WCAtl12to45E2 with WC14to60 This aligns the E3SM V2 Cryospheric campaign regionally-refined Southern Ocean mesh with the V2 Water Cycle WC14 mesh settings for sea ice. Thus the Antarctic regionally-refined settings in E3SM would become consistent with the Arctic settings, and vice versa. The two changes made are that the number of iterations in the atmospheric flux calculations use 10 not 5 iterations, and high-frequency coupling is switched on, which means that a transient Ekman solution is permitted in the sea ice model. [BFB] for all tested configurations 09 September 2021, 15:49:38 UTC
bc45dc5 Robert Jacob 09 September 2021, 15:38:20 UTC Merge branch 'lukaszlacinski/circleci' (PR #4508) Add the NERSC HTTP as a primary server with the Singularity source code tarball and use the ALCF Petrel HTTP server as a backup server. If the CircleCI test script fails when downloading the tarball from the server, the script falls back to the ALCF Petrel HTTP server. 09 September 2021, 15:38:20 UTC
a7c0047 Jon Wolfe 09 September 2021, 15:40:46 UTC Merge branch 'njeffery/mpas-seaice/zero-aerosol-coupling' (PR #4515) Zeroed out dummy ocean concentrations of aerosols This is a fix to issue #4514 : Sea ice receives negative ocean concentrations of aerosols when zaerosols are active in MPAS-seaice. Without this fix, the code crashes with a negative concentration error in the sea ice when zaerosols are active. Fixes #4514 [BFB] in all tested configurations 09 September 2021, 15:40:46 UTC
d0d2eb4 Wuyin Lin 09 September 2021, 00:38:11 UTC Replaced ne4_ne4 with ne4_oQU240 and ne4pg2_ne4pg2 with ne4pg2_OQU480 for F2010 tests. Added compset WCYCL1850NS for testing on small grids without spun-up ICs for ocean/ice. Removed eam-gust_param and eam-gust_export that are not needed for EAMv2. 09 September 2021, 00:38:11 UTC
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