| 85837df | xigumalu | 07 April 2017, 10:54:28 UTC | Merge branch 'master' into registerDenseZstack | 07 April 2017, 10:54:28 UTC |
| 2b8e609 | xigumalu | 07 April 2017, 10:52:04 UTC | Merge branch 'registerDenseZstack' of https://github.com/cortex-lab/Suite2P into registerDenseZstack | 07 April 2017, 10:52:04 UTC |
| 8725e73 | xigumalu | 07 April 2017, 10:51:30 UTC | bug fixes | 07 April 2017, 10:51:30 UTC |
| 878e4d2 | carsen-stringer | 07 April 2017, 08:55:04 UTC | added comments | 07 April 2017, 08:55:04 UTC |
| f8bcfef | carsen-stringer | 06 April 2017, 13:19:18 UTC | added comments | 06 April 2017, 13:19:18 UTC |
| 68a62cc | carsen-stringer | 06 April 2017, 12:51:22 UTC | added comments and information | 06 April 2017, 12:51:22 UTC |
| 2eecb53 | carsen-stringer | 06 April 2017, 12:19:31 UTC | moved projections into if statement with writeSVDroi | 06 April 2017, 12:19:31 UTC |
| 5965b0d | carsen-stringer | 06 April 2017, 11:50:51 UTC | added comments | 06 April 2017, 11:50:51 UTC |
| 9e0d00a | carsen-stringer | 06 April 2017, 11:45:05 UTC | added comments | 06 April 2017, 11:45:05 UTC |
| d93fa0a | carsen-stringer | 06 April 2017, 11:40:29 UTC | added comments | 06 April 2017, 11:40:29 UTC |
| c2b97db | marius10p | 05 April 2017, 22:18:00 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 05 April 2017, 22:18:00 UTC |
| 62375a2 | marius10p | 05 April 2017, 22:16:30 UTC | reverted to older method for normalizing correlation map | 05 April 2017, 22:16:30 UTC |
| 80eb1cc | carsen-stringer | 05 April 2017, 13:58:41 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 05 April 2017, 13:58:41 UTC |
| 9d74997 | carsen-stringer | 05 April 2017, 13:58:16 UTC | commented registration scripts and condensed bidiphase | 05 April 2017, 13:58:16 UTC |
| 291e6da | carsen-stringer | 05 April 2017, 13:57:47 UTC | commented registration scripts and condensed bidiphase | 05 April 2017, 13:57:47 UTC |
| d096755 | Marius Pachitariu | 05 April 2017, 13:50:21 UTC | bug in diff argument | 05 April 2017, 13:50:21 UTC |
| 04f06eb | Marius Pachitariu | 05 April 2017, 12:42:14 UTC | bug in taking the mean over the wrong dimension | 05 April 2017, 12:42:14 UTC |
| a601771 | marius10p | 05 April 2017, 11:09:53 UTC | bug in saving underlying neuropil traces | 05 April 2017, 11:09:53 UTC |
| 22ed5b7 | marius10p | 05 April 2017, 09:47:17 UTC | fixes convergence issues in sourcery(2) | 05 April 2017, 09:47:17 UTC |
| a017bc8 | marius10p | 27 March 2017, 21:53:17 UTC | fixed some new bugs | 27 March 2017, 21:53:17 UTC |
| 4aa1b31 | marius10p | 27 March 2017, 20:20:02 UTC | defaults for interpolateAcrossPlanes | 27 March 2017, 20:20:02 UTC |
| 826b1c7 | Marius Pachitariu | 27 March 2017, 19:35:26 UTC | Merge pull request #54 from cortex-lab/registerDenseZstack Register dense zstack | 27 March 2017, 19:35:26 UTC |
| 8a22ae0 | Marius Pachitariu | 27 March 2017, 19:35:17 UTC | Merge branch 'master' into registerDenseZstack | 27 March 2017, 19:35:17 UTC |
| ec679de | marius10p | 27 March 2017, 16:18:43 UTC | added explanation for less important fields of stat. | 27 March 2017, 16:18:43 UTC |
| 9f7ad03 | marius10p | 27 March 2017, 16:10:02 UTC | fixes typo pointed out by issue #49 | 27 March 2017, 16:10:02 UTC |
| 55f81da | marius10p | 27 March 2017, 16:07:33 UTC | added newline breaks | 27 March 2017, 16:07:33 UTC |
| 2c6a4a7 | marius10p | 27 March 2017, 16:04:29 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 27 March 2017, 16:04:29 UTC |
| 550fefb | marius10p | 27 March 2017, 16:00:16 UTC | defaulting to soft signal extraction without overlaps. Updated readme file. | 27 March 2017, 16:00:16 UTC |
| 7d51b82 | carsen-stringer | 27 March 2017, 10:28:15 UTC | fixed indexing for bidiphase | 27 March 2017, 10:28:15 UTC |
| 08f2861 | Marius Pachitariu | 25 March 2017, 11:00:37 UTC | Update sourcery.m | 25 March 2017, 11:00:37 UTC |
| 3d2afbc | carsen-stringer | 22 March 2017, 00:42:40 UTC | changed saving structure | 22 March 2017, 00:42:40 UTC |
| e28f4ba | carsen-stringer | 17 March 2017, 11:33:57 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 17 March 2017, 11:33:57 UTC |
| 3d2329f | carsen-stringer | 17 March 2017, 11:33:17 UTC | registration with bidiphase saved | 17 March 2017, 11:33:17 UTC |
| 454acba | Marius Pachitariu | 17 March 2017, 11:30:06 UTC | readme updates | 17 March 2017, 11:30:06 UTC |
| 0e5fea5 | carsen-stringer | 16 March 2017, 20:03:37 UTC | added bidiphase correction to red channel processing | 16 March 2017, 20:03:37 UTC |
| 6e6ca7b | carsen-stringer | 16 March 2017, 19:52:23 UTC | added bidiphase correction to red channel (computed in reg2P) | 16 March 2017, 19:52:23 UTC |
| 60a6c27 | carsen-stringer | 15 March 2017, 18:36:29 UTC | maximum neuropil coefficient enforced thru ops.maxNeurop | 15 March 2017, 18:36:29 UTC |
| a14dc5c | xigumalu | 09 March 2017, 09:55:48 UTC | Only save x- and y-offsets of the current plane in ops.DS; save x- and y-offsets of all frames aligned to target image of the current plane to ops.DS_allPlanes. Also, bug fixes. | 09 March 2017, 09:55:48 UTC |
| 38c9590 | xigumalu | 09 March 2017, 09:52:34 UTC | Adapted redoRegistration.m to work for registered dense z-stacks where frames are aligned in z-direction and/or averaged across neighbouring planes. Also, several planes will be registered at once. | 09 March 2017, 09:52:34 UTC |
| 8d0c7e1 | xigumalu | 07 March 2017, 18:23:41 UTC | Changed filenames that will be saved to .RegFileBinLocation so they match with the names used for .RegFile | 07 March 2017, 18:23:41 UTC |
| 898b79d | xigumalu | 07 March 2017, 18:21:04 UTC | Slight change to how planes are aligned in z-direction (correct file commited now) + several bug fixes | 07 March 2017, 18:21:04 UTC |
| 6668a99 | xigumalu | 06 March 2017, 18:51:54 UTC | Slight change to how planes are aligned in z-direction + a few bug fixes. | 06 March 2017, 18:51:54 UTC |
| 8a3e03d | xigumalu | 06 March 2017, 14:36:25 UTC | Merge branch 'master' into registerDenseZstack | 06 March 2017, 14:36:25 UTC |
| 8c9591b | xigumalu | 06 March 2017, 14:21:22 UTC | Added features to register dense z-stacks not just in x- and y- direction but also in z-direction. Additional options are: .targetImage - integer; target images are generated from frames of the specified experiment (useful if data is drifting in z-direction) .alignTargetImages - 0 or 1; if 1, target images of all planes are aligned ot each other in x- and y-direction .alignAcrossPlanes - 0 or 1; if 1, each frame is aligned to the best matching target image (chosen across planes) .interpolateAcrossPlanes - 0 or 1; if 1, at each time point the frame (of frames from all planes recorded during the same time) that matches the target image of the current plane best is inculded in the resulting movie, and neighbouring, similar planes are averaged (using appropriate weights) .planesToInterpolate - array of integers; these planes are stacked on top of each other (do not include flyback planes!) | 06 March 2017, 14:21:22 UTC |
| 36cca66 | sfailor | 02 March 2017, 22:08:41 UTC | Fixed writing of registered tiffs Changed write to int16 to prevent artifactual pixels | 02 March 2017, 22:08:41 UTC |
| 385ec15 | marius10p | 18 February 2017, 23:38:20 UTC | added neuropil coef in GUI | 18 February 2017, 23:38:20 UTC |
| aa60557 | Marius Pachitariu | 18 February 2017, 12:51:50 UTC | parameter to stop sourcery early ops.stopSourcery = percentage of ROIs out of the number found on the first iteration | 18 February 2017, 12:51:50 UTC |
| e0bf696 | Marius Pachitariu | 18 February 2017, 10:16:12 UTC | Merge pull request #50 from cortex-lab/fixRegBinFileCopy fix for saving RegBinFiles correctly | 18 February 2017, 10:16:12 UTC |
| 87ba262 | lfederico | 17 February 2017, 14:43:09 UTC | Rewind the file identifiers for the registered .bin files after write_reg_to_tiff or getBlockBegEnd. Otherwise, if you need to save a copy of the .bin files to another HDD ( i.e. if ~iesmpty(ops.RegFileBinLocation)) you will write empty .bin copies to disk. | 17 February 2017, 14:43:09 UTC |
| 7d1a7f0 | marius10p | 16 February 2017, 14:13:46 UTC | adding back the mean to signal extraction | 16 February 2017, 14:13:46 UTC |
| f839d17 | marius10p | 16 February 2017, 13:43:31 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 16 February 2017, 13:43:31 UTC |
| 330e5f5 | marius10p | 16 February 2017, 13:43:17 UTC | added back the mean to signal extraction | 16 February 2017, 13:43:17 UTC |
| 24d2af7 | carsen-stringer | 16 February 2017, 13:41:03 UTC | non-rigid registration: adding back splits in X | 16 February 2017, 13:41:03 UTC |
| 852f10e | carsen-stringer | 16 February 2017, 13:29:53 UTC | nonrigid registration: adding back the splits in X | 16 February 2017, 13:29:53 UTC |
| 3332639 | marius10p | 16 February 2017, 13:05:36 UTC | Merge branch 'aspectratio' | 16 February 2017, 13:05:36 UTC |
| e95eba0 | marius10p | 16 February 2017, 13:03:19 UTC | registration initialization | 16 February 2017, 13:03:19 UTC |
| 0b89133 | marius10p | 16 February 2017, 13:02:40 UTC | registration initialization | 16 February 2017, 13:02:40 UTC |
| eb6e35c | carsen-stringer | 16 February 2017, 12:28:10 UTC | compute aspect ratio for ROIs | 16 February 2017, 12:28:10 UTC |
| 644ef56 | carsen-stringer | 16 February 2017, 12:22:22 UTC | x shifts | 16 February 2017, 12:22:22 UTC |
| 0d4cfe6 | Marius Pachitariu | 14 February 2017, 11:35:27 UTC | Merge pull request #45 from cortex-lab/2016b-CompatibleChanges Changed for 2016b | 14 February 2017, 11:35:27 UTC |
| 936ae07 | Marius Pachitariu | 14 February 2017, 11:35:18 UTC | Merge branch 'master' into 2016b-CompatibleChanges | 14 February 2017, 11:35:18 UTC |
| d5405d1 | marius10p | 13 February 2017, 19:13:18 UTC | bug | 13 February 2017, 19:13:18 UTC |
| 741b612 | marius10p | 13 February 2017, 19:11:45 UTC | set doBiDi to 1 by default | 13 February 2017, 19:11:45 UTC |
| 3b960e0 | pipcoen | 06 February 2017, 14:09:58 UTC | Correct removal of "isfield" Fixes issue with 2016b | 06 February 2017, 14:09:58 UTC |
| 97e8113 | pipcoen | 06 February 2017, 13:59:25 UTC | Changed for 2016b Removed use of "isfield" with GPU array | 06 February 2017, 13:59:25 UTC |
| 5b38d44 | pipcoen | 06 February 2017, 13:57:49 UTC | Revert "Removed use of isfield" This reverts commit 578a5e5e425f420e3dd9ccad0cf4a78fdd562599. | 06 February 2017, 13:57:49 UTC |
| 578a5e5 | pipcoen | 06 February 2017, 13:53:09 UTC | Removed use of isfield Problems with 2016b compatibility | 06 February 2017, 13:53:09 UTC |
| d5f2dbf | Marius Pachitariu | 25 January 2017, 14:16:51 UTC | lowered batch size for registration | 25 January 2017, 14:16:51 UTC |
| e1ad0c5 | carsen-stringer | 20 January 2017, 16:49:26 UTC | ops0.dobidi added (set to 0 to turn off bidiphase correction) | 20 January 2017, 16:49:26 UTC |
| 4de025e | Marius Pachitariu | 16 January 2017, 19:04:57 UTC | in case GPU field 'AvailableMemory' is missing | 16 January 2017, 19:04:57 UTC |
| c8da42b | carsen-stringer | 11 January 2017, 13:57:29 UTC | commented ellipse ROI | 11 January 2017, 13:57:29 UTC |
| f69b859 | carsen-stringer | 11 January 2017, 13:36:27 UTC | fit ellipses to ROIs to help with classification | 11 January 2017, 13:36:27 UTC |
| a8424a8 | marius10p | 10 January 2017, 11:58:17 UTC | further fixes with "new classifier" | 10 January 2017, 11:58:17 UTC |
| e04364d | marius10p | 10 January 2017, 11:25:49 UTC | commented out unused, broken code | 10 January 2017, 11:25:49 UTC |
| 6b17f0a | marius10p | 10 January 2017, 10:56:32 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 10 January 2017, 10:56:32 UTC |
| 1848ecb | marius10p | 10 January 2017, 10:56:00 UTC | added st fields to h when loading classifier for first time | 10 January 2017, 10:56:00 UTC |
| 46641d1 | carsen-stringer | 10 January 2017, 10:11:39 UTC | changed red channel addon for new regops structure | 10 January 2017, 10:11:39 UTC |
| 53ecd0c | carsen-stringer | 09 January 2017, 20:52:24 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 09 January 2017, 20:52:24 UTC |
| 3d39ec7 | carsen-stringer | 09 January 2017, 20:51:44 UTC | changed output of blockRegisterMovieSmooth to be NT x 2 x Ly | 09 January 2017, 20:51:44 UTC |
| 4cc04ba | marius10p | 09 January 2017, 20:38:50 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 09 January 2017, 20:38:50 UTC |
| a52694d | marius10p | 09 January 2017, 20:38:29 UTC | added badframes field for non-rigid registration | 09 January 2017, 20:38:29 UTC |
| ab9d574 | Marius Pachitariu | 09 January 2017, 12:09:23 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 09 January 2017, 12:09:23 UTC |
| e63b091 | Marius Pachitariu | 09 January 2017, 12:08:58 UTC | unbalanced paranthesis | 09 January 2017, 12:08:58 UTC |
| a75088b | carsen-stringer | 09 January 2017, 12:05:48 UTC | do not move pixels unless bidiphase > 0 | 09 January 2017, 12:05:48 UTC |
| 83f4901 | carsen-stringer | 09 January 2017, 12:04:12 UTC | update blockReg2P for bidiphase | 09 January 2017, 12:04:12 UTC |
| 57183bb | Marius Pachitariu | 09 January 2017, 11:35:07 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 09 January 2017, 11:35:07 UTC |
| ab9f5be | Marius Pachitariu | 09 January 2017, 11:34:56 UTC | fixed lower range for xrange | 09 January 2017, 11:34:56 UTC |
| e537705 | Marius Pachitariu | 09 January 2017, 11:33:26 UTC | fixed min and max for yrange, xrange | 09 January 2017, 11:33:26 UTC |
| 30795d6 | carsen-stringer | 07 January 2017, 17:34:21 UTC | added some comments | 07 January 2017, 17:34:21 UTC |
| 9767c32 | carsen-stringer | 07 January 2017, 12:58:27 UTC | fixed indexing and maxregshift for different pixel sizes | 07 January 2017, 12:58:27 UTC |
| f6e9e7a | Marius Pachitariu | 07 January 2017, 11:52:02 UTC | indexing was off by 1 in non-rigid registration | 07 January 2017, 11:52:02 UTC |
| 579197b | carsen-stringer | 07 January 2017, 11:30:19 UTC | fixed for odd pixel frames | 07 January 2017, 11:30:19 UTC |
| 9302f73 | carsen-stringer | 06 January 2017, 16:39:50 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 06 January 2017, 16:39:50 UTC |
| 3a11afb | carsen-stringer | 06 January 2017, 16:39:09 UTC | fixed for large frame sizes | 06 January 2017, 16:39:09 UTC |
| f5a0dba | marius10p | 05 January 2017, 11:17:51 UTC | small changes suggested by Mehmet | 05 January 2017, 11:17:51 UTC |
| 562e8fa | Marius Pachitariu | 04 January 2017, 17:10:26 UTC | frames per batch is 1000 if on CPU | 04 January 2017, 17:10:26 UTC |
| bc10bd1 | carsen-stringer | 04 January 2017, 17:05:01 UTC | fixed for useGPU=0 | 04 January 2017, 17:05:01 UTC |
| 3ce9c9e | carsen-stringer | 04 January 2017, 17:03:01 UTC | fixed function for useGPU = 0 | 04 January 2017, 17:03:01 UTC |
| 005bfee | carsen-stringer | 04 January 2017, 12:18:57 UTC | default mask | 04 January 2017, 12:18:57 UTC |
| fa611f3 | marius10p | 02 January 2017, 19:24:46 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 02 January 2017, 19:24:46 UTC |
