| 1f80629 | Thomas Wiecki | 11 March 2023, 13:40:42 UTC | Revert "Add Mistplay sponsor (#6570)" This reverts commit b6521f2d6725d4c8d2ed682c7017baae5ebf55a2. | 11 March 2023, 13:40:42 UTC |
| b6521f2 | Raj Parekh | 11 March 2023, 13:40:16 UTC | Add Mistplay sponsor (#6570) * Adding Mistplay image in the Readme * Adding Mistplay image in the Readme | 11 March 2023, 13:40:16 UTC |
| 5392336 | Alejandro Icazatti | 09 March 2023, 18:48:43 UTC | fix typo | 11 March 2023, 13:07:00 UTC |
| fc51fd3 | Chris Mann | 07 March 2023, 15:40:16 UTC | Fix typos in Potential docstring * Remove spurious minus signs from the first two code examples in the Potential function * Shorten warning about applicability of Potential only to logp-based sampling | 11 March 2023, 12:22:26 UTC |
| 5603792 | Ricardo Vieira | 09 March 2023, 15:29:29 UTC | Add explicit support for Python 3.11 | 10 March 2023, 18:33:51 UTC |
| 4965292 | Ricardo Vieira | 09 March 2023, 18:24:00 UTC | Skip test_polyagamma_moment if library is not installed | 10 March 2023, 18:33:51 UTC |
| cf6d4ce | Raj Parekh | 10 March 2023, 16:59:56 UTC | Allow passing dims to Potential and Deterministic (#6576) * Adding dims parameter in Potential * Test case to check the dims in potential | 10 March 2023, 16:59:56 UTC |
| 047141c | Reshama Shaikh | 09 March 2023, 10:59:57 UTC | Gitpod instructions (#6549) * initial gitpod instructions * update url * spelling * more instructions on gitpod * new line at end of file * fix trailing whitespace * fix trailing whitespace * fix trailing whitespace * fix wording * try image * try sphinx image code * add link format * add link format * add link format * add link format * try html for image Co-authored-by: Ben Mares <services-git-throwaway1@tensorial.com> * add blank line * try image code * spacing, fix commit errors * backticks * try image option again * terminal instructions * clarify instructions * fix image agai * fix precommit spacing errors * try admonition * try double indent * resize image * pre-commit error * add workspace image * clean up formatting * fix pre-commit error * fix pre-commit error * pre-commit error * use generic user name Co-authored-by: Ben Mares <services-git-throwaway1@tensorial.com> * indent note Co-authored-by: Oriol Abril-Pla <oriol.abril.pla@gmail.com> * use console instead of bash for backticks content Co-authored-by: Oriol Abril-Pla <oriol.abril.pla@gmail.com> * indent list Co-authored-by: Oriol Abril-Pla <oriol.abril.pla@gmail.com> * verb grammar * use console instead of bash * clean up text * clean up text and formatting * indent * indent --------- Co-authored-by: Ben Mares <services-git-throwaway1@tensorial.com> Co-authored-by: Oriol Abril-Pla <oriol.abril.pla@gmail.com> | 09 March 2023, 10:59:57 UTC |
| a41d524 | Ricardo Vieira | 07 March 2023, 08:36:47 UTC | Bring back testing utilities used in downstream packages Follow up to * 534a9ae28a6bfea3bc31921cd92e4e4d2875b6c9 * e1d36cacb2cfb946f56872ee03e8678dc6ccf7f4 | 08 March 2023, 13:26:08 UTC |
| 49aacf4 | Ricardo Vieira | 08 March 2023, 08:31:25 UTC | Allow Scan logprob inference of non-pure RandomVariable outputs Most of the IR logprob rewrites require a PreserveRVMappings feature in the fgraph. The rewrite responsible to introduce IR in the inner graph of Scan was not adding this feature. In addition, find_measurable_scans, was bailing out when there were MesurableVariable nodes that were not outputs, even if these were being used by downstream nodes as the source of measurability. | 08 March 2023, 09:26:11 UTC |
| e76bba9 | Ricardo Vieira | 07 March 2023, 12:18:04 UTC | Fix bug in transform_scan_values | 07 March 2023, 17:46:20 UTC |
| 534a9ae | Virgile Andreani | 07 March 2023, 07:43:55 UTC | Exclude tests from package discovery (#6552) * Clean up MANIFEST.in * Remove useless option from setup.py * Exclude tests from package discovery * Make get_data not look at local files anymore This seems to be a relic of the past when `tests/data` contained data files. It is not the case anymore. | 07 March 2023, 07:43:55 UTC |
| b57cabe | pymc-bot | 06 March 2023, 07:04:23 UTC | ⬆️ UPGRADE: Autoupdate pre-commit config | 06 March 2023, 19:55:02 UTC |
| 8208291 | Michal Raczycki | 06 March 2023, 08:31:28 UTC | changed params after sigma to kwarg only | 06 March 2023, 11:34:25 UTC |
| fb83972 | Ben Mares | 05 March 2023, 18:24:03 UTC | Fix no-commit-to-branch pre-commit hook to protect main | 05 March 2023, 22:10:54 UTC |
| 253aaa8 | Dhruvanshu-Joshi | 05 March 2023, 20:24:55 UTC | Updated docstring for Potential function (#6559) * Updated docstring for Potential function * Updating docstring according to suggestions * Updated Potential docstring as per suggestion | 05 March 2023, 20:24:55 UTC |
| 2f945bb | Ricardo Vieira | 02 March 2023, 16:54:07 UTC | Revert "Default to using McBackend" This reverts commit 1988b6581b2ec35898e0864fb2ccac51c40f91ad. | 02 March 2023, 18:47:25 UTC |
| 1988b65 | Michael Osthege | 05 February 2023, 16:33:03 UTC | Default to using McBackend | 01 March 2023, 09:32:38 UTC |
| 5510d3f | Michael Osthege | 05 February 2023, 16:32:49 UTC | Test McBackend support | 01 March 2023, 09:32:38 UTC |
| 76df402 | Michael Osthege | 05 February 2023, 16:32:49 UTC | Add optional McBackend support | 01 March 2023, 09:32:38 UTC |
| 6a0e74d | Michael Osthege | 26 February 2023, 14:22:59 UTC | Refactor `StatsBijection` to expose information about object stats | 01 March 2023, 09:32:38 UTC |
| 763a3ea | Ricardo Vieira | 27 February 2023, 12:18:14 UTC | Do not install nutpie for external sampler tests Conda nutpie, and soon pip, depend on the last release of PyMC and by association PyTensor, leading to dependency issues when trying to test compatibility after PyMC bumps the PyTensor dependency. | 28 February 2023, 15:57:16 UTC |
| 5bf1bb7 | Michael Osthege | 18 February 2023, 11:33:07 UTC | Remove type hint workaround Was fixed in https://github.com/pymc-devs/pytensor/pull/205 | 28 February 2023, 15:57:16 UTC |
| 5d9f72c | Ricardo Vieira | 17 February 2023, 17:56:12 UTC | Bump PyTensor dependency to 2.10.1 | 28 February 2023, 15:57:16 UTC |
| 1ca1c94 | Ricardo Vieira | 14 February 2023, 15:35:48 UTC | Replace rvs_to_total_sizes mapping by ManibatchRandomVariables | 28 February 2023, 13:06:13 UTC |
| 33d641d | Johannes Keyser | 26 February 2023, 17:56:37 UTC | Fix two typos. | 27 February 2023, 00:10:38 UTC |
| 14a10b7 | Michael Osthege | 26 February 2023, 10:50:25 UTC | Refactor sample return (#6546) * Extract return part of `pm.sample` * Speed up `test_mcmc` * Group tests related to `pm.sample` return parameters * Consolidate tests of return options Removes a regression test added in #3821 because it took 14 seconds. | 26 February 2023, 10:50:25 UTC |
| 9b59771 | Michal Raczycki | 25 February 2023, 16:11:30 UTC | Add check for variables in step samplers (#6524) * added value check for step samplers * changing error message to be more informative * added test checking if variable not being in model.value_vars will trigger Value error * implemented changes from PR review * Fix rebase --------- Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 25 February 2023, 16:11:30 UTC |
| b9a3dcc | Virgile Andreani | 25 February 2023, 11:13:30 UTC | Fix some code lints found with ruff (#6545) * Make isort happy with imports order * Avoid shadowing the logprob fn with a local name * Deal with unused error names * Remove unreachable return * Remove unread variable * Fix type checking for variational/approximations * A few typing fixes | 25 February 2023, 11:13:30 UTC |
| e1d36ca | Virgile Andreani | 21 February 2023, 01:36:45 UTC | Move tests outside of code directory | 22 February 2023, 22:10:01 UTC |
| 562e51e | Michal Raczycki | 22 February 2023, 16:51:14 UTC | issue #5791, dims & cords inference from xarray (#6514) * added dim inference from xarray, deprecation warning and unittest for the new feature * fixed typo in warning * fixed accidental quotation around dim * fixed failing assertions * found and fixed cause of the failing test * changed the coords assertion according to suggested form * fixing mypy type missmatch * working on getting the test to work * removed typecasting to string on dim_name, was causing the mypy to fail * took care locally of mypy errors * Typo/formatting fixes --------- Co-authored-by: Michal Raczycki <michalraczycki@macbook-pro-michal.home> Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 22 February 2023, 16:51:14 UTC |
| e45e6c2 | Michal Raczycki | 22 February 2023, 10:14:14 UTC | increase zerosum readability issue #6459 (#6522) * added n_zerosum_axes and added backwards compatibility for previous parameter name * fixed typo that caused the zerosum_axes param not to be saved correctly in the new param * adapted tests to use n_zerosum_axes --------- Co-authored-by: Michal Raczycki <michalraczycki@macbook-pro-michal.home> | 22 February 2023, 10:14:14 UTC |
| ec30a2f | Somasree Majumder | 20 February 2023, 16:36:51 UTC | BetaBinomial variance is not correctly described (#6516) | 20 February 2023, 16:36:51 UTC |
| 2978b40 | Michael Osthege | 20 February 2023, 16:02:24 UTC | Build docs in simplified environment (#6537) * Build docs in simplified environment * Fix docs build * Remove private API section from docs | 20 February 2023, 16:02:24 UTC |
| c5e20ff | Alejandro Icazatti | 09 February 2023, 23:52:34 UTC | Small fix in HyperGeometric docstring | 20 February 2023, 13:49:06 UTC |
| b3541ad | pymc-bot | 20 February 2023, 07:04:37 UTC | ⬆️ UPGRADE: Autoupdate pre-commit config | 20 February 2023, 11:49:29 UTC |
| 7e9e17d | Michael Osthege | 11 February 2023, 21:04:04 UTC | Specify `stats_dtypes_shapes` for all samplers | 20 February 2023, 11:08:05 UTC |
| 99f17c7 | Michael Osthege | 11 February 2023, 19:36:18 UTC | Introduce `stats_dtypes_shape` attribute Closes #6503 | 20 February 2023, 11:08:05 UTC |
| 26f884b | Michael Osthege | 11 February 2023, 11:23:05 UTC | Add `StatsBijection.n_samplers` property | 20 February 2023, 11:08:05 UTC |
| 31c30dc | Dhruvanshu-Joshi | 16 February 2023, 14:58:20 UTC | Adding function for mutable coords (#6515) * adding function for mutable coords * Added coords_mutable * add coords_mutable * Make `coords_mutable` an explicit kwarg * Remove reference to undefined variable * Adding an if block --------- Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 16 February 2023, 14:58:20 UTC |
| c2ce47f | Ricardo Vieira | 15 February 2023, 14:36:46 UTC | Make all but `draws` keyword-only arguments in `sample`. Reorder arguments more logically [citation needed] | 15 February 2023, 20:25:36 UTC |
| 0660efa | Thomas Wiecki | 01 January 2023, 06:06:14 UTC | Allow external nuts sampler directly from `sample` Co-authored-by: Ricardo Vieira <28983449+ricardov94@users.noreply.github.com> | 15 February 2023, 20:25:36 UTC |
| 4ed38b0 | Ricardo Vieira | 02 February 2023, 15:42:17 UTC | Raise error when trying to jaxify graphs with RNGs | 15 February 2023, 20:25:36 UTC |
| 9172925 | Ricardo Vieira | 02 February 2023, 15:29:46 UTC | Remove experimental module warning from jax.py | 15 February 2023, 20:25:36 UTC |
| 301b28a | Ricardo Vieira | 14 February 2023, 09:26:07 UTC | Fix flaky `test_truncation_specialized_op` Using empty for the observed would sometimes lead PyMC into triggering automatic imputation, whenever the trash values in empty were nan. | 15 February 2023, 07:56:44 UTC |
| 3fcf675 | dependabot[bot] | 14 February 2023, 17:23:13 UTC | Bump docker/build-push-action from 3 to 4 (#6505) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 3 to 4. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/v3...3b5e8027fcad23fda98b2e3ac259d8d67585f671) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 14 February 2023, 17:23:13 UTC |
| 2eb911e | dependabot[bot] | 13 February 2023, 10:01:45 UTC | Bump docker/setup-buildx-action from 2.4.0 to 2.4.1 (#6520) Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.4.0 to 2.4.1. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](https://github.com/docker/setup-buildx-action/compare/v2.4.0...v2.4.1) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 13 February 2023, 10:01:45 UTC |
| 3733296 | bsenst | 12 February 2023, 20:56:44 UTC | Update GLM_linear.ipynb (#6519) * update link to john kruschkes book * google plus has been stopped in 2018 - remove dead link | 12 February 2023, 20:56:44 UTC |
| 28bac77 | Virgile Andreani | 07 February 2023, 20:30:39 UTC | Remove test redundant with test_mixture.py | 07 February 2023, 22:30:23 UTC |
| ab680a5 | Virgile Andreani | 07 February 2023, 20:29:08 UTC | Remove test redundant with test_measurable_join_* | 07 February 2023, 22:30:23 UTC |
| 5524d6a | Virgile Andreani | 07 January 2023, 17:33:28 UTC | Move pymc/distributions/logprob.py to pymc/logprob * _joint_logp to pymc/logprob/joint_logprob.py * _get_scaling, _check_no_rvs, logp to logprob/joint_logprob.py * logcdf to logprob/abstract.py * ignore_logprob to logprob/utils.py | 07 February 2023, 22:30:23 UTC |
| e74b58d | Virgile Andreani | 23 December 2022, 06:17:16 UTC | Move joint_logprob to test/logprob/utils.py | 07 February 2023, 22:30:23 UTC |
| c5e4497 | pymc-bot | 06 February 2023, 07:05:00 UTC | ⬆️ UPGRADE: Autoupdate pre-commit config | 07 February 2023, 10:35:41 UTC |
| 9eaf1f2 | Michael Osthege | 05 February 2023, 15:42:28 UTC | More robust tune stat fetching and type hints The mcmc module relies on the `"tune"` stat to figure out the number of tune/draw iterations post sampling. These changes remove reliance on any weird squeeze-cat magic. Co-authored-by: Virgile Andreani <armavica@ulminfo.fr> | 07 February 2023, 08:46:59 UTC |
| d58f9f6 | Michael Osthege | 03 February 2023, 21:22:01 UTC | Allow for `StatsBijection.rmap` of incomplete stat dicts | 07 February 2023, 08:46:59 UTC |
| ac9652e | Alek Racicot | 03 February 2023, 19:16:03 UTC | Add nu parametrization to beta distribution (#6344) * Add (mu, nu) parametrization * add test beta logp * Add relationship between alpha, beta and nu * change test structure * remove white space accidently added in docstring * remove sample size from docstring --------- Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 03 February 2023, 19:16:03 UTC |
| b213cf3 | Michael Osthege | 24 January 2023, 22:47:32 UTC | Fix `test_weibull_logp` flakyness | 03 February 2023, 13:29:22 UTC |
| 26f7636 | Michael Osthege | 14 January 2023, 23:23:36 UTC | Create traces with `init_traces` helper function | 03 February 2023, 13:29:22 UTC |
| c5aff17 | Michael Osthege | 12 January 2023, 19:39:55 UTC | Modify internal sampling functions from `BaseTrace` to `IBaseTrace` | 03 February 2023, 13:29:22 UTC |
| e739546 | Michael Osthege | 12 January 2023, 19:08:28 UTC | Introduce `IBaseTrace` with minimal API for chain backends | 03 February 2023, 13:29:22 UTC |
| 51724c5 | dependabot[bot] | 01 February 2023, 10:02:17 UTC | Bump docker/setup-buildx-action from 2.0.0 to 2.4.0 (#6490) * Bump docker/setup-buildx-action from 2.0.0 to 2.3.0 Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 2.0.0 to 2.3.0. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](https://github.com/docker/setup-buildx-action/compare/dc7b9719a96d48369863986a06765841d7ea23f6...5e716dcfd653738c2d1db099bfba194a84158be4) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Pin docker/setup-buildx-action to 2.4.0 --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 01 February 2023, 10:02:17 UTC |
| 08e324c | lucianopaz | 01 February 2023, 08:54:55 UTC | Add git-blame-ignore-revs file. Ignoring apache header commit in blame | 01 February 2023, 09:57:05 UTC |
| 0a3548d | lucianopaz | 01 February 2023, 08:51:16 UTC | Apply or update apache v2 license header to all files | 01 February 2023, 09:57:05 UTC |
| 8ea3b35 | lucianopaz | 01 February 2023, 08:50:01 UTC | Add step to pre-commit that inserts or updates Apache v2 license header | 01 February 2023, 09:57:05 UTC |
| 594ec1c | lucianopaz | 31 January 2023, 21:22:16 UTC | Update isort pre-commit rev to 5.12.0 to avoid a poetry deprecation bug | 01 February 2023, 09:57:05 UTC |
| af8cab2 | Greg Brunkhorst | 01 February 2023, 08:50:11 UTC | Align DEMetropolis defaults with literature recommendations (#6488) * Changed DEMetropolis and DEMetropolisZ sampler defaults to NormalProposal and tune scaling Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 01 February 2023, 08:50:11 UTC |
| 65c1c68 | Ricardo Vieira | 01 February 2023, 05:31:26 UTC | Register Op as subclass of Distributions with `rv_type` defined (#6493) This is the case of distributions that return SymbolicRandomVariables | 01 February 2023, 05:31:26 UTC |
| 26048a4 | Chris Fonnesbeck | 30 January 2023, 03:59:28 UTC | Make VI (posterior) mean and std accessible as a structured xarray (#6387) * make vi (posterior) mean and std accessible as a structured xarray data set * add doc strings * convert to original dtype * add docstring and comment * test `mean_data` and `std_data` for shape and coords * Moved tests to tests/variational * Formatting * Updated deprecated function; removed dict comparison operator * Removed bad dict operator in tests * Fixed type hint * Alternative type hint * Property return type hints Co-authored-by: Michael Osthege <michael.osthege@outlook.com> * Property return type hints Co-authored-by: Michael Osthege <michael.osthege@outlook.com> * Removed clobbering of shared reference Co-authored-by: Michael Osthege <michael.osthege@outlook.com> * Add type hint Co-authored-by: Michael Osthege <michael.osthege@outlook.com> --------- Co-authored-by: Markus Schmaus <markus.schmaus.math@gmail.com> Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 30 January 2023, 03:59:28 UTC |
| f2a7174 | Ben Mares | 26 January 2023, 09:18:46 UTC | Update GitPod base image to use pymc-built image (#6483) | 26 January 2023, 09:18:46 UTC |
| 2f6de76 | Ben Mares | 26 January 2023, 08:41:34 UTC | Add devcontainer Docker image (#6482) * Switch base image * Update base image * Add Live Share extension * Update devcontainer base image * Use _dev-init.sh as startup command * Also run _dev-init.sh in init section * Update base devcontainer * Remove Live Share since doesn't exist on OpenVSX * Add Pyright extension * Set default interpreter path * Install pre-commit hooks in background * Also set python.pythonPath * Remove deprecated python.pythonPath setting * Add Git History plugin * Install pre-commit hooks in foreground * Add .dockerignore * Add dev.Dockerfile * Add workflow to build devcontainer * Disable arm64 devcontainer builds * Sudo * Use prebuilt PyMC devcontainer * Make all files writeable * Copy pre-built pre-commit cache if it doesn't exist yet * Run chmod with sudo * Use updated devcontainer * Make chmod recursive * Update devcontainer base * Set PRE_COMMIT_HOME to save precomputed cache * Chown conda-meta/history Not sure why this is necessary. Otherwise I get: critical libmamba Operation not permitted: '/opt/conda/conda-meta/history' * Update devcontainer base image * Remove GHA version comments Bumping version numbers should work via dependabot. * Name image as pymc-devcontainer * Use latest available pymc-devcontainer * Bump devcontainer base version * Ensure pre-commit hooks are installed * Add some vscode settings | 26 January 2023, 08:41:34 UTC |
| da45205 | Mikhail Naumov | 25 January 2023, 04:24:36 UTC | typo error bar typo | 25 January 2023, 19:12:34 UTC |
| 902b1ec | Ricardo Vieira | 23 January 2023, 10:10:07 UTC | Enforce dims to be strings | 25 January 2023, 09:47:54 UTC |
| f4986a4 | Chris Fonnesbeck | 23 January 2023, 20:25:33 UTC | Updated LICENSE to include AePPL license info (#6474) * Updated LICENSE to include AePPL license info * newline | 23 January 2023, 20:25:33 UTC |
| ae45919 | pymc-bot | 23 January 2023, 07:03:34 UTC | ⬆️ UPGRADE: Autoupdate pre-commit config | 23 January 2023, 07:57:39 UTC |
| 310ebaf | pymc-bot | 16 January 2023, 07:04:13 UTC | ⬆️ UPGRADE: Autoupdate pre-commit config | 21 January 2023, 10:18:18 UTC |
| 00d2675 | Ricardo Vieira | 20 January 2023, 10:47:27 UTC | Use separate argument in CustomDist for functions that return symbolic representations | 20 January 2023, 22:26:10 UTC |
| 5802f12 | Michael Osthege | 14 January 2023, 23:12:37 UTC | Make trace backend related type hints more generic * Specify covariant input types in `StatsBijection`. * Annotate `_choose_chains` to be independent of `BaseTrace` type. | 20 January 2023, 12:02:26 UTC |
| ce66620 | Michael Osthege | 14 January 2023, 16:23:28 UTC | Avoid `SamplerReport` methods in convergence checks The goal was to uncouple sampling functions from `MultiTrace` and `SamplerReport`. Some calls to `SamplerReport._log_summary()` were unnecessary because `MultiTrace._add_warnings()` was never called inbetween instantiation and `_log_summary()`, therefore the traces never contained warnings. Running convergence checks and logging the warnings can also be done without needing `MultiTrace` or `SamplerReport` instances/methods. | 20 January 2023, 12:02:26 UTC |
| db65421 | Michael Osthege | 14 January 2023, 15:53:16 UTC | Add type hints to SMC code | 20 January 2023, 12:02:26 UTC |
| 22b4446 | Ricardo Vieira | 21 December 2022, 11:07:45 UTC | Avoid missing_rvs warning when using RandomWalk | 20 January 2023, 10:15:34 UTC |
| 6007e84 | Ricardo Vieira | 21 December 2022, 19:29:28 UTC | Add helper to undo `ignore_logprob` | 20 January 2023, 10:15:34 UTC |
| 3c01e65 | Ricardo Vieira | 21 December 2022, 19:28:28 UTC | Return empty list of measurable outputs from UnmeasurableVariables instead of None | 20 January 2023, 10:15:34 UTC |
| 749a3a6 | Ricardo Vieira | 21 December 2022, 11:07:10 UTC | Do not squeeze single chain in `sample_stats_to_xarray` | 20 January 2023, 10:15:34 UTC |
| 6ab0c03 | Michael Osthege | 12 January 2023, 19:00:29 UTC | Fix `BaseTrace` and `MultiTrace` typing; remove `add_values`/`remove_values` The `add_values`/`remove_values` methods accessed attributes that are not present on `BaseTrace` but only on `NDarray`, therefore violating the signature. | 14 January 2023, 01:27:44 UTC |
| 6c4d4eb | jessegrabowski | 12 January 2023, 18:58:21 UTC | Fix bug that does not correctly set the dtype of determinsitic variab… (#6425) * Fix bug that does not correctly set the dtype of determinsitic variable after automatic imputation * Change `at.zeros` to `at.empty` when creating combined observed/missing vector Co-authored-by: Ricardo Vieira <28983449+ricardoV94@users.noreply.github.com> | 12 January 2023, 18:58:21 UTC |
| c3b8ff4 | Michael Osthege | 12 January 2023, 16:39:31 UTC | Bump PyTensor to 2.9.1 (#6431) * Bump PyTensor to 2.9.1 * Allow installation from `.conda` artifacts * Workaround type issues in `shape_utils` Caused by https://github.com/pymc-devs/pytensor/issues/193 | 12 January 2023, 16:39:31 UTC |
| ecb3666 | pymc-bot | 09 January 2023, 07:04:04 UTC | ⬆️ UPGRADE: Autoupdate pre-commit config | 11 January 2023, 17:25:30 UTC |
| a99d4ea | Oriol Abril-Pla | 11 January 2023, 17:24:16 UTC | Add seealso note to install docs (#6448) * Add seealso note to install docs * remove trailing whitespace * Update docs/source/installation.md Co-authored-by: Michael Osthege <michael.osthege@outlook.com> Co-authored-by: Michael Osthege <michael.osthege@outlook.com> | 11 January 2023, 17:24:16 UTC |
| 3d747af | Michael Osthege | 08 January 2023, 19:44:58 UTC | Introduce `StatsBijection` to combine stats dicts | 11 January 2023, 17:23:29 UTC |
| 10c66b4 | Michael Osthege | 08 January 2023, 20:52:09 UTC | Move `Competence` and `BlockedStep` to `compound` module These types follow directly from the introduction of CompoundStep. Moving them decouples code that depends on them from the `arraystep` module. | 11 January 2023, 17:23:29 UTC |
| 8547d6d | Michael Osthege | 10 January 2023, 17:23:01 UTC | Fix several typing gaps | 10 January 2023, 19:13:42 UTC |
| d6f1aad | Michael Osthege | 08 January 2023, 23:29:26 UTC | Refactor sampling functiongs to use initialized traces | 10 January 2023, 19:13:42 UTC |
| c0e017d | Michael Osthege | 08 January 2023, 22:41:13 UTC | Remove `iter_sample` function | 10 January 2023, 19:13:42 UTC |
| 925c3c9 | Michael Osthege | 08 January 2023, 22:26:50 UTC | Remove `discard_tuned_samples` from `_mp_sample` | 10 January 2023, 19:13:42 UTC |
| 4c020e7 | Michael Osthege | 08 January 2023, 23:26:10 UTC | Move population size warnings to population sampling submodule | 10 January 2023, 19:13:42 UTC |
| 6ad9693 | Michael Osthege | 08 January 2023, 22:56:45 UTC | Require explicit kwargs in internal sampling functions | 10 January 2023, 19:13:42 UTC |
| 434333f | Virgile Andreani | 07 January 2023, 18:27:26 UTC | Correct orthographic typos | 08 January 2023, 18:38:50 UTC |
| 669e4f5 | reshamas | 04 January 2023, 15:53:08 UTC | add ref to template notebook in Jupyter style guide | 08 January 2023, 18:34:08 UTC |
| db11a23 | Ricardo Vieira | 06 January 2023, 11:25:36 UTC | Infer logrob of absolute transform Co-authored-by: Luke LB <ll17354@bristol.ac.uk> | 07 January 2023, 08:21:57 UTC |
| 2953c8b | Ricardo Vieira | 06 January 2023, 11:21:05 UTC | Generalize handling of invalid values in measurable transforms We rely on the jacobian returning `nan` for invalid values Co-authored-by: Luke LB <ll17354@bristol.ac.uk> | 07 January 2023, 08:21:57 UTC |
