| fda83d7 | marius10p | 10 July 2016, 15:55:29 UTC | new file for deconvolution | 10 July 2016, 15:55:29 UTC |
| ff46cc1 | marius10p | 10 July 2016, 15:54:46 UTC | refined deconvolution code | 10 July 2016, 15:54:46 UTC |
| 8bb0ed2 | marius10p | 09 July 2016, 09:29:22 UTC | bug | 09 July 2016, 09:29:22 UTC |
| 216e8c5 | marius10p | 09 July 2016, 09:28:26 UTC | bug | 09 July 2016, 09:28:26 UTC |
| 95225b3 | marius10p | 09 July 2016, 09:25:37 UTC | more updates for deconvolution, moving towards stable version 1.0 | 09 July 2016, 09:25:37 UTC |
| ad57e61 | marius10p | 08 July 2016, 13:52:40 UTC | turned isroi into a logical | 08 July 2016, 13:52:40 UTC |
| 73e4258 | marius10p | 08 July 2016, 13:26:34 UTC | deconvolution on proc files | 08 July 2016, 13:26:34 UTC |
| 7d77721 | marius10p | 08 July 2016, 13:22:55 UTC | trying again for deconvolution on proc files | 08 July 2016, 13:22:55 UTC |
| 78969f1 | marius10p | 08 July 2016, 13:15:45 UTC | fixed deconvolution bug on proc data | 08 July 2016, 13:15:45 UTC |
| 9a22bb3 | marius10p | 08 July 2016, 12:42:10 UTC | fixed bugs in add_deconvolution | 08 July 2016, 12:42:10 UTC |
| 8836a83 | marius10p | 07 July 2016, 22:06:36 UTC | fixed bug in deconvolution code (normalization of kernel was required) | 07 July 2016, 22:06:36 UTC |
| bcd9ac2 | marius10p | 07 July 2016, 15:37:12 UTC | starting matlab pool before the actual loop | 07 July 2016, 15:37:12 UTC |
| bc84740 | marius10p | 07 July 2016, 14:14:18 UTC | added warning to spike deconvolution code | 07 July 2016, 14:14:18 UTC |
| ef0347a | marius10p | 07 July 2016, 14:06:13 UTC | CHANGED ops.imageRate to be the cumulative imaging rate over all planes | 07 July 2016, 14:06:13 UTC |
| 6ad436f | marius10p | 07 July 2016, 13:28:40 UTC | for very large files switch to -v7.3 | 07 July 2016, 13:28:40 UTC |
| 3b228a8 | marius10p | 04 July 2016, 14:29:36 UTC | fixed red channel for single plane | 04 July 2016, 14:29:36 UTC |
| 3a63409 | marius10p | 01 July 2016, 19:26:12 UTC | fixed bug in deconvolution (was working only on first block of recording!) | 01 July 2016, 19:26:12 UTC |
| f93aa4f | marius10p | 30 June 2016, 21:19:34 UTC | added paper link | 30 June 2016, 21:19:34 UTC |
| 7b8fab8 | marius10p | 30 June 2016, 20:28:15 UTC | added more options for computing the red channel | 30 June 2016, 20:28:15 UTC |
| 92f8293 | marius10p | 30 June 2016, 18:08:49 UTC | removed non-operational modules | 30 June 2016, 18:08:49 UTC |
| 93417a8 | marius10p | 30 June 2016, 18:00:10 UTC | fixe bugs in some situations | 30 June 2016, 18:00:10 UTC |
| f606421 | marius10p | 30 June 2016, 08:59:05 UTC | some further fixed bugs and more readme | 30 June 2016, 08:59:05 UTC |
| 9c89b20 | marius10p | 29 June 2016, 15:47:44 UTC | added tile factor option and forced deconvolution on proc files first | 29 June 2016, 15:47:44 UTC |
| 2db966d | marius10p | 29 June 2016, 13:08:15 UTC | zsserver4 path | 29 June 2016, 13:08:15 UTC |
| 19972f3 | marius10p | 29 June 2016, 13:07:26 UTC | zserver4 path | 29 June 2016, 13:07:26 UTC |
| 6854507 | marius10p | 29 June 2016, 13:03:42 UTC | added entire toolbox to path | 29 June 2016, 13:03:42 UTC |
| 3625b4b | marius10p | 29 June 2016, 12:59:18 UTC | bug | 29 June 2016, 12:59:18 UTC |
| af4a61b | marius10p | 29 June 2016, 12:19:16 UTC | removed asv files from save | 29 June 2016, 12:19:16 UTC |
| eda5501 | marius10p | 29 June 2016, 12:16:48 UTC | some new files for gui | 29 June 2016, 12:16:48 UTC |
| 840f6ad | marius10p | 29 June 2016, 12:16:21 UTC | refurbished GUI and master_file_example | 29 June 2016, 12:16:21 UTC |
| 0d6b85e | marius10p | 28 June 2016, 15:09:57 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 28 June 2016, 15:09:57 UTC |
| 42d7404 | marius10p | 28 June 2016, 15:09:35 UTC | new deconvolution approach | 28 June 2016, 15:09:35 UTC |
| 3afd8b2 | carsen-stringer | 27 June 2016, 22:23:29 UTC | file for Linux compatibility | 27 June 2016, 22:23:29 UTC |
| 6ee3619 | marius10p | 23 June 2016, 07:36:25 UTC | added back default clustparent options for GUI | 23 June 2016, 07:36:25 UTC |
| 5a95f35 | marius10p | 23 June 2016, 07:33:28 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 23 June 2016, 07:33:28 UTC |
| c959f7b | marius10p | 23 June 2016, 07:32:47 UTC | removed clustrules.parent from all scripts | 23 June 2016, 07:32:47 UTC |
| 522831d | marius10p | 21 June 2016, 13:33:09 UTC | one more change to example | 21 June 2016, 13:33:09 UTC |
| 112ea43 | marius10p | 21 June 2016, 12:51:07 UTC | improved readme and comments on options | 21 June 2016, 12:51:07 UTC |
| eb7b721 | marius10p | 19 June 2016, 12:09:44 UTC | red and yellow buttons for quadrants! | 19 June 2016, 12:09:44 UTC |
| 61e9663 | marius10p | 19 June 2016, 10:31:39 UTC | fixed some gui options, added gui image normalization | 19 June 2016, 10:31:39 UTC |
| 857ed84 | marius10p | 18 June 2016, 07:38:41 UTC | corrected name for red channel in gui2P | 18 June 2016, 07:38:41 UTC |
| 7a13028 | marius10p | 18 June 2016, 07:25:44 UTC | fixed red channel bug (no channel was wrong) | 18 June 2016, 07:25:44 UTC |
| aa2cff3 | marius10p | 17 June 2016, 15:51:09 UTC | initialize clustrules.parent in run_pipeline | 17 June 2016, 15:51:09 UTC |
| 034f93e | marius10p | 16 June 2016, 01:22:01 UTC | inverted parameters for MaxNpix and MinNpix | 16 June 2016, 01:22:01 UTC |
| d345a18 | marius10p | 15 June 2016, 17:56:46 UTC | clustrules.diameter added in master_file_example | 15 June 2016, 17:56:46 UTC |
| af29ea8 | marius10p | 11 June 2016, 07:42:57 UTC | made gui proportional scaling | 11 June 2016, 07:42:57 UTC |
| 37ef7a9 | marius10p | 11 June 2016, 07:33:27 UTC | added gui2P | 11 June 2016, 07:33:27 UTC |
| 0919ddf | marius10p | 11 June 2016, 07:32:18 UTC | delete gui2p | 11 June 2016, 07:32:18 UTC |
| 75b7daa | marius10p | 11 June 2016, 07:20:47 UTC | added gui2P and a few changes from TENSS | 11 June 2016, 07:20:47 UTC |
| 2bcac7b | marius10p | 06 June 2016, 16:33:25 UTC | external use of spike deconvolution | 06 June 2016, 16:33:25 UTC |
| 6c99a3b | marius10p | 31 May 2016, 16:06:20 UTC | Added spike detection code | 31 May 2016, 16:06:20 UTC |
| 1ecb0e7 | marius10p | 18 May 2016, 10:25:12 UTC | bug | 18 May 2016, 10:25:12 UTC |
| fceedbe | marius10p | 18 May 2016, 08:26:37 UTC | changed orientation of res.M | 18 May 2016, 08:26:37 UTC |
| 29f741d | marius10p | 17 May 2016, 21:44:06 UTC | removed extra files | 17 May 2016, 21:44:06 UTC |
| 80b8c7e | marius10p | 17 May 2016, 21:42:17 UTC | started tracking multiple folders, and replaced dependence on +img | 17 May 2016, 21:42:17 UTC |
| 8c60ddd | marius10p | 26 April 2016, 16:29:46 UTC | fixed bug in run_pipeline | 26 April 2016, 16:29:46 UTC |
| 3ae5d25 | marius10p | 25 April 2016, 17:48:18 UTC | one more bug | 25 April 2016, 17:48:18 UTC |
| 57b927b | marius10p | 25 April 2016, 16:43:11 UTC | fixed ranges of imagesc of cells | 25 April 2016, 16:43:11 UTC |
| 4eeb698 | marius10p | 25 April 2016, 13:55:39 UTC | bug in processsed planes | 25 April 2016, 13:55:39 UTC |
| c189732 | marius10p | 25 April 2016, 13:49:50 UTC | bounds for value of image plot | 25 April 2016, 13:49:50 UTC |
| c075af5 | marius10p | 25 April 2016, 13:48:08 UTC | script -> function update in run_pipeline | 25 April 2016, 13:48:08 UTC |
| 7a95616 | marius10p | 25 April 2016, 13:47:39 UTC | some updates | 25 April 2016, 13:47:39 UTC |
| e9bf53b | marius10p | 05 April 2016, 08:22:57 UTC | fixed bug w/ respect to number of SVDs | 05 April 2016, 08:22:57 UTC |
| e6b0192 | marius10p | 29 March 2016, 14:01:41 UTC | fixed the "no registration" processing path | 29 March 2016, 14:01:41 UTC |
| e81a640 | marius10p | 22 March 2016, 15:27:24 UTC | preinitialized RegFileBinLocation with empty array in reg2P | 22 March 2016, 15:27:24 UTC |
| 8308d92 | marius10p | 22 March 2016, 11:01:58 UTC | uncommented run_pipeline as function | 22 March 2016, 11:01:58 UTC |
| 40f73e6 | xigumalu | 21 March 2016, 17:12:10 UTC | Merge branch 'master' into saveBin | 21 March 2016, 17:12:10 UTC |
| f8e3615 | xigumalu | 21 March 2016, 17:09:29 UTC | Added option to save bin-files | 21 March 2016, 17:09:29 UTC |
| ae56d60 | marius10p | 21 March 2016, 14:59:27 UTC | blockReg2P: fixed bug in yrange and xrange being the same, and allowed saving the svds used for ROI | 21 March 2016, 14:59:27 UTC |
| e155fa3 | marius10p | 10 March 2016, 13:31:11 UTC | small changes | 10 March 2016, 13:31:11 UTC |
| 042fdd9 | xigumalu | 08 March 2016, 18:49:19 UTC | ops.mimg is concatenated mean images from blocks | 08 March 2016, 18:49:19 UTC |
| 049c170 | marius10p | 07 March 2016, 16:53:18 UTC | fixed mimg to be equal to mimg1 | 07 March 2016, 16:53:18 UTC |
| 049e168 | marius10p | 06 March 2016, 22:52:20 UTC | implemented non-rigid registration in interpolated blocks | 06 March 2016, 22:52:20 UTC |
| 1c3b25e | marius10p | 06 March 2016, 20:18:11 UTC | block registration, test 2 | 06 March 2016, 20:18:11 UTC |
| c8d19b2 | marius10p | 06 March 2016, 20:17:22 UTC | blocked registration, test commit | 06 March 2016, 20:17:22 UTC |
| 1fd7427 | marius10p | 06 March 2016, 16:38:04 UTC | Merge branch 'master' of https://github.com/cortex-lab/Suite2P | 06 March 2016, 16:38:04 UTC |
| 2110dce | marius10p | 06 March 2016, 16:36:24 UTC | released forced niterations in run_pipeline and removed master_fileMP.m | 06 March 2016, 16:36:24 UTC |
| a38bf40 | marius10p | 28 February 2016, 16:06:00 UTC | sdad | 28 February 2016, 16:06:00 UTC |
| 98aaf38 | marius10p | 21 February 2016, 16:38:24 UTC | updated NEU model extraction | 21 February 2016, 16:38:24 UTC |
| 2bcc7cd | xigumalu | 17 February 2016, 11:19:07 UTC | changed comments in master_file | 17 February 2016, 11:19:07 UTC |
| 881b21d | xigumalu | 17 February 2016, 10:57:34 UTC | Fixed neuropil calculation when all cells are considered | 17 February 2016, 10:57:34 UTC |
| ce1edf6 | xigumalu | 12 February 2016, 14:17:21 UTC | Deleted if clause | 12 February 2016, 14:17:21 UTC |
| 1aad88d | marius10p | 11 February 2016, 11:09:54 UTC | Update README.txt | 11 February 2016, 12:47:53 UTC |
| c10bdde | xigumalu | 11 February 2016, 09:53:42 UTC | Creates bin file of registered movie based on ops output from run_pipeline | 11 February 2016, 12:47:52 UTC |
| d07e927 | marius10p | 10 February 2016, 21:14:13 UTC | fixed bug | 11 February 2016, 12:47:52 UTC |
| 0e1f7e0 | marius10p | 10 February 2016, 16:13:49 UTC | fixed conflicts with how to run neuropil subtraction | 11 February 2016, 12:47:50 UTC |
| faf9e84 | marius10p | 10 February 2016, 15:56:33 UTC | new model for cell detection including neuropil can specify whether to use the new model or not (ops0.clustModel) and which neuropil method to use (surround as implemented by Mario, or the model-interpolated background) | 11 February 2016, 12:45:33 UTC |
| 852a81a | marius10p | 03 February 2016, 15:47:45 UTC | fixed save path for registered tiffs | 11 February 2016, 12:40:47 UTC |
| 5876138 | marius10p | 30 January 2016, 09:36:52 UTC | ops0.sig = 0 | 11 February 2016, 12:40:39 UTC |
| 7aa662b | xigumalu | 09 February 2016, 19:58:29 UTC | Bug fix (make compatible with gui2P) | 09 February 2016, 19:58:29 UTC |
| 954f0bd | xigumalu | 08 February 2016, 13:19:11 UTC | Check for empty ROI masks | 08 February 2016, 13:19:11 UTC |
| 25f1f99 | xigumalu | 05 February 2016, 11:57:24 UTC | Option to skip signal+neuropil calculation Also: description of parameters for get_signals_and_neuropil in master_file; option name changes in get_signals_and_neuropil | 05 February 2016, 11:57:24 UTC |
| f9ad900 | xigumalu | 04 February 2016, 18:23:53 UTC | Merge pull request #11 from marius10p/neuropil_SS Neuropil | 04 February 2016, 18:23:53 UTC |
| 54eb074 | xigumalu | 04 February 2016, 18:19:51 UTC | bug fixes + comments | 04 February 2016, 18:19:51 UTC |
| 672639f | xigumalu | 04 February 2016, 17:48:32 UTC | Merge remote-tracking branch 'refs/remotes/origin/master' into neuropil_SS | 04 February 2016, 17:48:32 UTC |
| 82808ca | xigumalu | 04 February 2016, 17:45:49 UTC | Makes neuropil calculation more flexible, more options | 04 February 2016, 17:45:49 UTC |
| abba00d | xigumalu | 03 February 2016, 11:34:22 UTC | Merge remote-tracking branch 'refs/remotes/origin/master' into neuropil_SS | 03 February 2016, 11:34:22 UTC |
| 2c6d7e1 | xigumalu | 02 February 2016, 17:35:05 UTC | Bug fixes in calculation of mean red image | 02 February 2016, 17:35:05 UTC |
| 248a385 | xigumalu | 02 February 2016, 11:32:09 UTC | Extract zoom factor from tiff header | 02 February 2016, 11:32:09 UTC |
| 02f204b | xigumalu | 01 February 2016, 20:12:03 UTC | includes all zoom factors + added Bergamo2 as scope type | 01 February 2016, 20:12:03 UTC |
