| 38be579 | Tom Hicks | 13 September 2017, 18:19:16 UTC | Rename build artifacts for this branch to avoid confusion. | 13 September 2017, 18:19:16 UTC |
| 76eb88a | Tom Hicks | 09 September 2017, 16:06:20 UTC | Update some tests for BioEntities changes previously added to latest BioResources, which branch sri is using. | 09 September 2017, 16:06:20 UTC |
| e7f12b3 | Tom Hicks | 09 September 2017, 01:27:32 UTC | Use SRI drug synonyms KB: update build to read it from Bioresources 1.1.24-SNAPSHOT and Processors 6.1.2-SNAPSHOT. | 09 September 2017, 01:27:32 UTC |
| ca6b605 | Tom Hicks | 29 August 2017, 22:41:57 UTC | Merge pull request #540 from clulab/proc6.0.8 Update Reach to use newly released Processors 6.1.1 | 29 August 2017, 22:41:57 UTC |
| 529602e | Tom Hicks | 29 August 2017, 21:15:41 UTC | Update build to use newly released Processors 6.1.1. | 29 August 2017, 21:15:41 UTC |
| 3801765 | Tom Hicks | 24 August 2017, 23:02:46 UTC | Merge latest 'master' into proc6.0.8. | 24 August 2017, 23:02:46 UTC |
| b95a5c6 | Mihai Surdeanu | 24 August 2017, 22:55:28 UTC | Merge pull request #539 from clulab/iss538 issue #528: add stem for deplete/depletion. Add tests. | 24 August 2017, 22:55:28 UTC |
| 0b6de3f | Tom Hicks | 24 August 2017, 22:29:22 UTC | issue #528: add stem for deplete/depletion. Add tests. | 24 August 2017, 22:29:22 UTC |
| 0893e5c | Tom Hicks | 16 August 2017, 15:33:20 UTC | Merge branch akkup: Refactor location of some server files. Cleanups. Port change. | 16 August 2017, 15:33:20 UTC |
| d2d3470 | Tom Hicks | 14 August 2017, 18:47:41 UTC | Refactor location of some server files. | 14 August 2017, 18:47:41 UTC |
| 7ce4e0b | Tom Hicks | 10 August 2017, 14:18:07 UTC | Update build to allow specification of mainClass for assembly task. | 10 August 2017, 14:18:07 UTC |
| 6337682 | Tom Hicks | 09 August 2017, 23:50:59 UTC | Update Akka/Akka HTTP libraries to latest, refactor Akka servers and configurations. | 09 August 2017, 23:50:59 UTC |
| d14566f | Tom Hicks | 08 August 2017, 18:47:49 UTC | Trivial doc fix in a test. | 08 August 2017, 18:47:49 UTC |
| b592125 | Tom Hicks | 28 July 2017, 01:39:33 UTC | Setting version to 1.3.5-SNAPSHOT | 28 July 2017, 01:39:33 UTC |
| 86a10c2 | Tom Hicks | 28 July 2017, 01:39:32 UTC | Setting version to 1.3.4 | 28 July 2017, 01:39:32 UTC |
| fff3b3a | Tom Hicks | 28 July 2017, 01:29:43 UTC | Merge pull request #534 from clulab/cosrvr Update to use Akka-based processors server | 28 July 2017, 01:29:43 UTC |
| 0727cef | Tom Hicks | 28 July 2017, 01:01:51 UTC | Update to use Processors 6.0.7 release. Update CHNAGES file. | 28 July 2017, 01:01:51 UTC |
| 6a17268 | Tom Hicks | 27 July 2017, 01:08:09 UTC | Update NXML indexing/searching for processors core server. | 27 July 2017, 01:08:09 UTC |
| becca9e | Tom Hicks | 26 July 2017, 23:30:21 UTC | Update for removal of semantic roles. | 26 July 2017, 23:30:21 UTC |
| 7f59722 | Tom Hicks | 26 July 2017, 21:15:17 UTC | Update JSON serialization test to avoid stale data. | 26 July 2017, 21:15:17 UTC |
| 471bdda | Tom Hicks | 26 July 2017, 21:13:12 UTC | Remove processor specification from Reach configuration. | 26 July 2017, 21:13:12 UTC |
| 894c423 | Tom Hicks | 26 July 2017, 21:12:07 UTC | Update main Reach users of processors core. | 26 July 2017, 21:12:07 UTC |
| 4431136 | Tom Hicks | 26 July 2017, 00:06:57 UTC | Merge latest 'master' into cosrvr. | 26 July 2017, 00:06:57 UTC |
| efb8e64 | Tom Hicks | 22 July 2017, 01:35:30 UTC | Setting version to 1.3.4-SNAPSHOT | 22 July 2017, 01:35:30 UTC |
| 82631d2 | Tom Hicks | 22 July 2017, 01:35:29 UTC | Setting version to 1.3.3 | 22 July 2017, 01:35:29 UTC |
| ab17ff7 | Tom Hicks | 22 July 2017, 01:31:26 UTC | Update CHANGES file. | 22 July 2017, 01:31:26 UTC |
| 4e91f0b | Tom Hicks | 22 July 2017, 01:17:51 UTC | Merge pull request #532 from clulab/proc6.0.6 Update Reach for Processors 6.0.6 release | 22 July 2017, 01:17:51 UTC |
| bf0f9ce | Tom Hicks | 21 July 2017, 23:47:23 UTC | Update cosrvr branch to use BR 1.1.23 and proc 6.0.7-SNAPSHOT. | 21 July 2017, 23:47:23 UTC |
| 90d0ca3 | Tom Hicks | 21 July 2017, 23:02:16 UTC | Update main build for Processors release 6.0.6, Biores release 1.1.23. | 21 July 2017, 23:02:16 UTC |
| d67ab30 | Tom Hicks | 19 July 2017, 21:04:51 UTC | Sync a few small changes from upcoming cosrvr branch. | 19 July 2017, 21:04:51 UTC |
| 9510f78 | Tom Hicks | 17 July 2017, 03:35:06 UTC | Update coserver for use of BioNLP in Processors. | 17 July 2017, 03:35:06 UTC |
| ca1e581 | Tom Hicks | 15 July 2017, 02:07:14 UTC | Add new test inputs and tests for Ruler and OpenSystem. | 15 July 2017, 02:07:14 UTC |
| 4b5a361 | Tom Hicks | 15 July 2017, 02:05:00 UTC | Redo Ruler and OpenSystem to use processor core client. | 15 July 2017, 02:05:00 UTC |
| 8d103fc | Tom Hicks | 14 July 2017, 01:02:59 UTC | Rethrow runtime exceptions returned by the server. | 14 July 2017, 01:02:59 UTC |
| d7653ee | Tom Hicks | 13 July 2017, 19:44:03 UTC | Read client params from config. Begin unused selection logic. | 13 July 2017, 19:44:03 UTC |
| a430237 | Tom Hicks | 12 July 2017, 22:36:51 UTC | Add annotator methods tests in core client tests. | 12 July 2017, 22:36:51 UTC |
| 8e0a006 | Tom Hicks | 12 July 2017, 22:36:09 UTC | Make calls to annotators return Document. | 12 July 2017, 22:36:09 UTC |
| c03446f | Tom Hicks | 11 July 2017, 03:26:56 UTC | Restore annotator call tests. | 11 July 2017, 03:26:56 UTC |
| 2207767 | Tom Hicks | 10 July 2017, 04:13:14 UTC | Set default ask timeout to 30 seconds. | 10 July 2017, 04:13:14 UTC |
| 993a9a4 | Tom Hicks | 10 July 2017, 04:12:11 UTC | Add remaining tests for non-annotator methods. | 10 July 2017, 04:12:11 UTC |
| 9c441c0 | Tom Hicks | 10 July 2017, 04:11:12 UTC | Reset one leftover debug statement. | 10 July 2017, 04:11:12 UTC |
| 586d7b2 | Tom Hicks | 10 July 2017, 03:58:14 UTC | Update client for use of ref to pooled router. | 10 July 2017, 03:58:14 UTC |
| 4e466d7 | Tom Hicks | 21 June 2017, 04:28:47 UTC | Add initial test of processor core client. | 21 June 2017, 04:28:47 UTC |
| 6a022cd | Tom Hicks | 21 June 2017, 04:15:51 UTC | Update processor core client for use of server instance. | 21 June 2017, 04:15:51 UTC |
| e303187 | Tom Hicks | 20 June 2017, 02:22:52 UTC | Comment out annotator actions with mutable arguments in processor core client. | 20 June 2017, 02:22:52 UTC |
| 882c74f | Tom Hicks | 20 June 2017, 02:19:31 UTC | Merge in changes from branch which updated Reach for Jackson. | 20 June 2017, 02:19:31 UTC |
| 682d7b2 | Tom Hicks | 20 June 2017, 00:18:52 UTC | Update FRIES output test for switch to Jackson. | 20 June 2017, 00:18:52 UTC |
| 8c03303 | Gus Hahn-Powell | 17 June 2017, 22:51:21 UTC | Merge branch 'proc6.0.6' of github.com:clulab/reach into proc6.0.6 | 17 June 2017, 22:51:21 UTC |
| 432bdc9 | Gus Hahn-Powell | 17 June 2017, 22:49:31 UTC | json4s.native -> json4s.jackson | 17 June 2017, 22:49:31 UTC |
| 2ec800b | Tom Hicks | 17 June 2017, 22:20:03 UTC | Rename Odin library in build file. | 17 June 2017, 22:20:03 UTC |
| 4d400b0 | Tom Hicks | 17 June 2017, 21:06:52 UTC | Change name of Odin library. | 17 June 2017, 21:06:52 UTC |
| 347d50d | Tom Hicks | 17 June 2017, 15:08:20 UTC | Fix leftover printlns in ReachSystem. | 17 June 2017, 15:08:20 UTC |
| 6cfe31a | Tom Hicks | 17 June 2017, 14:36:43 UTC | Make processor core client program compile. | 17 June 2017, 14:36:43 UTC |
| 70d4215 | Tom Hicks | 17 June 2017, 13:21:09 UTC | Merge serialization fixes from proc6.0.6 via jsonupdate branch. | 17 June 2017, 13:21:09 UTC |
| e97865d | Tom Hicks | 17 June 2017, 12:05:15 UTC | WIP: Read ask timeout from config (untested stash). | 17 June 2017, 13:12:53 UTC |
| 7ba27aa | Tom Hicks | 17 June 2017, 13:10:08 UTC | Merge in fixes from proc6.0.6. | 17 June 2017, 13:10:08 UTC |
| dc3ea36 | Gus Hahn-Powell | 17 June 2017, 05:12:32 UTC | Merge pull request #522 from bgyori/issue325_2 Issue 325: Remove prep_in from rule inhibition of | 17 June 2017, 05:12:32 UTC |
| 2c55e56 | Gus Hahn-Powell | 17 June 2017, 05:07:47 UTC | Changes for compatibility with processors v6.0.6 Working with 6.0.6-SNAPSHOT | 17 June 2017, 05:07:47 UTC |
| 8222d5f | Tom Hicks | 14 June 2017, 23:07:07 UTC | Extract and return data from replies. | 14 June 2017, 23:07:07 UTC |
| 7aec324 | Tom Hicks | 13 June 2017, 22:06:12 UTC | Begin to update Reach JSON serialization for processor JSON changes. | 13 June 2017, 22:06:12 UTC |
| 09d41fb | Tom Hicks | 13 June 2017, 17:55:57 UTC | WIP: Preliminary reach build changes and processor core client: does not compile. | 13 June 2017, 17:55:57 UTC |
| d3482fb | Ben Gyori | 12 June 2017, 16:51:44 UTC | Syntax fix in activation tests | 12 June 2017, 16:51:44 UTC |
| 83b7e71 | Ben Gyori | 27 May 2017, 00:16:50 UTC | Remove prep_in from rule inhibition/activation of | 12 June 2017, 13:50:02 UTC |
| ef7767e | Gus Hahn-Powell | 09 June 2017, 20:07:57 UTC | Merge pull request #521 from bgyori/issue325 Issue325: exclude X sensitivity/resistance from activation | 09 June 2017, 20:07:57 UTC |
| 9783c15 | Mihai Surdeanu | 07 June 2017, 23:55:05 UTC | Merge branch 'master' of https://github.com/clulab/reach | 07 June 2017, 23:55:05 UTC |
| 4c3488e | Mihai Surdeanu | 07 June 2017, 23:54:45 UTC | Added script to compute overlap between two IR outputs. | 07 June 2017, 23:54:45 UTC |
| 77fb354 | Mihai Surdeanu | 07 June 2017, 23:36:25 UTC | Added second NCD query. | 07 June 2017, 23:36:25 UTC |
| a871216 | Tom Hicks | 02 June 2017, 13:51:27 UTC | Merge pull request #526 from clulab/fixtsv Missed one edit from last TSV commit. | 02 June 2017, 13:51:27 UTC |
| 1ee97ae | Tom Hicks | 02 June 2017, 13:28:33 UTC | Missed one edit from last TSV commit. | 02 June 2017, 13:28:33 UTC |
| 1a7de05 | Tom Hicks | 02 June 2017, 11:57:30 UTC | Merge pull request #525 from clulab/tsv Add Arizona format TSV output to the API | 02 June 2017, 11:57:30 UTC |
| 97e188e | Tom Hicks | 02 June 2017, 06:42:51 UTC | Merge latest 'master' into tsv. | 02 June 2017, 06:42:51 UTC |
| 06781e1 | Tom Hicks | 02 June 2017, 06:03:38 UTC | Recognize some aliases for Arizona TSV output format in the API. | 02 June 2017, 06:03:38 UTC |
| f3212ff | Tom Hicks | 02 June 2017, 01:21:48 UTC | Add Arizona format TSV output. | 02 June 2017, 01:21:48 UTC |
| a11d2cf | Mihai Surdeanu | 02 June 2017, 00:03:55 UTC | Merge pull request #524 from clulab/fastbionlp Added option to use FastBioNLPProcessor | 02 June 2017, 00:03:55 UTC |
| 2238179 | Mihai Surdeanu | 01 June 2017, 23:36:20 UTC | Added option to use FastBioNLPProcessor | 01 June 2017, 23:36:20 UTC |
| 1dff885 | Tom Hicks | 30 May 2017, 17:49:13 UTC | Merge pull request #523 from clulab/apiserj Added serial-json output to Reach API | 30 May 2017, 17:49:13 UTC |
| 6d63425 | Tom Hicks | 30 May 2017, 16:01:09 UTC | Fix remaining call to serial JSON output format. | 30 May 2017, 16:01:09 UTC |
| 6486869 | Tom Hicks | 30 May 2017, 14:36:04 UTC | Fix call to serial JSON output format. Update CHANGES file. | 30 May 2017, 14:38:14 UTC |
| 26254e6 | Tom Hicks | 30 May 2017, 01:00:34 UTC | Add serial JSON output format to API. | 30 May 2017, 01:00:34 UTC |
| a9ca713 | Ben Gyori | 26 May 2017, 23:27:15 UTC | Exclude sensitivity/resistance as controlled | 26 May 2017, 23:36:03 UTC |
| 5e12c1d | Ben Gyori | 26 May 2017, 17:17:12 UTC | Add test for issue #516 | 26 May 2017, 23:25:24 UTC |
| e5d1f34 | Mihai Surdeanu | 26 May 2017, 22:50:27 UTC | Merge branch 'master' of https://github.com/clulab/reach | 26 May 2017, 22:50:27 UTC |
| d9dcac7 | Mihai Surdeanu | 26 May 2017, 22:50:17 UTC | new use case | 26 May 2017, 22:50:17 UTC |
| a78df50 | Dane Bell | 26 May 2017, 19:26:33 UTC | Merge pull request #519 from bgyori/issue334 Issue 334: Exclude special case for X phosphorylation | 26 May 2017, 19:26:33 UTC |
| f76cd6e | Dane Bell | 26 May 2017, 18:28:06 UTC | Merge pull request #520 from danebell/issue513 Coref does not assume event grounding | 26 May 2017, 18:28:06 UTC |
| 4ae6b47 | Dane Bell | 26 May 2017, 18:26:41 UTC | Coref does not assume event grounding | 26 May 2017, 18:26:41 UTC |
| 06402d2 | Ben Gyori | 26 May 2017, 18:17:56 UTC | Exclude special case for X phosphorylation | 26 May 2017, 18:17:56 UTC |
| f56c4bf | Gus Hahn-Powell | 26 May 2017, 06:52:30 UTC | Merge pull request #517 from bgyori/issue516 Remove catalysis from activation rule trigger | 26 May 2017, 06:52:30 UTC |
| 25a6f44 | Ben Gyori | 26 May 2017, 06:04:29 UTC | Remove catalysis from activation rule trigger | 26 May 2017, 06:04:29 UTC |
| e761089 | Mihai Surdeanu | 23 May 2017, 15:40:37 UTC | Merge branch 'master' of https://github.com/clulab/reach | 23 May 2017, 15:40:37 UTC |
| 4297849 | Mihai Surdeanu | 23 May 2017, 15:40:29 UTC | Added rule binding_thatisbound_surface | 23 May 2017, 15:40:29 UTC |
| d25b1c6 | Mihai Surdeanu | 23 May 2017, 00:08:45 UTC | Improved NCD query | 23 May 2017, 00:08:45 UTC |
| ccf0ee8 | Mihai Surdeanu | 19 May 2017, 18:04:35 UTC | Merge branch 'master' of https://github.com/clulab/reach | 19 May 2017, 18:04:35 UTC |
| 81ce670 | Mihai Surdeanu | 19 May 2017, 18:04:21 UTC | Added the NCD use case | 19 May 2017, 18:04:21 UTC |
| 0dda975 | Mihai Surdeanu | 01 May 2017, 23:22:16 UTC | Update README.md | 01 May 2017, 23:22:16 UTC |
| 198b248 | Gus Hahn-Powell | 26 April 2017, 21:23:56 UTC | Merge pull request #508 from clulab/json-fix Json fix | 26 April 2017, 21:23:56 UTC |
| 17afa13 | Gus Hahn-Powell | 26 April 2017, 20:24:59 UTC | Merge pull request #507 from clulab/issue495 binding11_token over-generates binding events | 26 April 2017, 20:24:59 UTC |
| 89da8aa | Gus Hahn-Powell | 26 April 2017, 20:20:37 UTC | Resolves #506 | 26 April 2017, 20:20:37 UTC |
| 1d0863b | Gus Hahn-Powell | 26 April 2017, 20:20:22 UTC | Update to processors v6.0.5 | 26 April 2017, 20:20:22 UTC |
| 2cd16d8 | Dane Bell | 26 April 2017, 18:49:29 UTC | Just comment out binding11_token | 26 April 2017, 18:49:29 UTC |
