Skip to main content

Browse the archive

https://github.com/E3SM-Project/E3SM
06 April 2024, 03:10:57 UTC
sort by:
Revision Author Date Message Commit Date
9dc8880 Qi Tang 07 December 2019, 06:54:03 UTC Turn off O3 drydep in F20TRC5-CMIP6 07 December 2019, 06:54:03 UTC
5286a48 Qi Tang 27 August 2019, 18:08:05 UTC Update the namelist_definition to include default O3v2 parameter values (cherry picked from commit 592f84483ab9ea99a7f9899a6eeb76307e75e677) 07 December 2019, 06:51:54 UTC
71c5246 Qi Tang 06 July 2019, 23:44:40 UTC Make Linoz tuning parameters name list variables Change the hard-coded Linoz tuning parameters to name list variables * The tuning parameters are for the boundary layer ozone loss [BFB] - Bit-For-Bit [NML] - Namelist Changing (cherry picked from commit 123f11f44a5f5262fdb40b9740d7dea2d2ad43af) 07 December 2019, 06:51:33 UTC
c28377f Qi Tang 04 July 2019, 05:22:26 UTC Implement O3v2 in Linoz Implement the newly designed Linoz O3v2 * Add ozone sink in the boundary layer with a fix e-folding decay to a typical ozone concentration in the boundary layer * Disable the tropospheric ozone rewrite to mozart climatology * Turn off ozone dry deposition (Currently turned off in the test runs via user_nl_cam, need to do it by changing compset settings in future commit) * Need to change hard-coded parameters to name list variables with future commit. [Non-BFB] - Non Bit-For-Bit (cherry picked from commit 19742f6fddbabcc09b6334e34213ffcad98a99f7) 07 December 2019, 06:50:57 UTC
54b596a Balwinder Singh 26 November 2019, 05:18:22 UTC Merge branch 'cameron-smith1/compset/ne120_20tr_CMIP6' into maint-1.0 ... (PR #3312) ne120 CMIP6 Historical Transient Compset (A_WCYCL20TRS_CMIP6_HR) This commit implements the hi-res (ne120) compset A_WCYCL20TRS_CMIP6_HR for historical transient CMIP6 simulations. The compset covers 1850-2014. [BFB, except for the A_WCYCL20TRS_CMIP6_HR compset] * cameron-smith1/compset/ne120_20tr_CMIP6: ne120 CMIP6 Historical Transient Compset 26 November 2019, 05:18:22 UTC
6c6faf1 Jon Wolfe 19 November 2019, 13:47:44 UTC Merge branch 'mark-petersen/maint-1.0/update_mpas_python3' into maint-1.0 Update mpas-source for python 3 This PR brings in a new mpas-source submodule that updates BGC and cvmix submodules within MPAS-Ocean to adhere to python 3 19 November 2019, 13:47:44 UTC
332c51f Philip Cameron-Smith 13 November 2019, 19:37:06 UTC ne120 CMIP6 Historical Transient Compset This commit implements the hi-res (ne120) compset A_WCYCL20TRS_CMIP6_HR for historical transient CMIP6 simulations. The compset covers 1850-2014. [BFB, except for the A_WCYCL20TRS_CMIP6_HR compset] 13 November 2019, 19:37:06 UTC
758c7ac mark-petersen 12 November 2019, 18:20:13 UTC update mpas-source for python 3 12 November 2019, 21:51:46 UTC
6f45b51 James Foucar 06 November 2019, 18:41:00 UTC py3 fix 06 November 2019, 18:41:00 UTC
e8dde07 jayeshkrishna 22 October 2019, 21:23:56 UTC Merge pull request #3243 from E3SM-Project/jayeshkrishna/scorpio_on_maint_1_0 Adding support for Scorpio (and Scorpio classic) in maint-1.0 [BFB] 22 October 2019, 21:23:56 UTC
8e24095 Jayesh Krishna 21 October 2019, 15:12:21 UTC Revert to using https for scorpio submodules Since maint-1.0, unlike master, still uses https for submodules reverting previous change (to use ssh) to use https for submodules. 21 October 2019, 15:12:21 UTC
f12e2ad Jayesh Krishna 07 October 2019, 15:46:06 UTC Enable PIO2 interface for MPAS MPAS requires a compile-time flag to turn on the newer PIO2 inferfaces. Scorpio and scorpio classic support the newer PIO2 interfaces. So turning on these interfaces in E3SM for both scorpio and scorpio classic. 07 October 2019, 15:57:27 UTC
50eaa89 Jayesh Krishna 04 October 2019, 04:54:15 UTC Merge branch 'jayeshkrishna/add_e3sm_pio_for_maint' into jayeshkrishna/scorpio_on_maint_1_0 This merge brings in v1.0.1 of SCORPIO to E3SM and includes CIME changes required to use SCORPIO * Scorpio classic (derived from PIO1) is now the default I/O library used by E3SM. * E3SM users can choose to use scorpio (derived from PIO2) by changing the PIO_VERSION, in env_build.xml, to 2. * Scorpio and scorpio classic libraries are included as git submodules * Adding a compile time switch to disable the BGET memory allocator, due to its poor performance, in SCORPIO. * The default rearranger is set to BOX [BFB] 04 October 2019, 04:54:15 UTC
c8d2825 Jayesh Krishna 03 October 2019, 18:45:35 UTC Merge branch 'jayeshkrishna/pio2_cime_changes_for_maint' into jayeshkrishna/scorpio_on_maint_1_0 This merge includes CIME fixes for PIO2, * Configure/compile options for PIO2 * Some machine file changes for anlworkstation for PIO2 (Upgrades NetCDF and PnetCDF lib versions, reduces default number of tasks from 64 to 32) [BFB] 03 October 2019, 18:45:35 UTC
2b0091d Jayesh Krishna 03 October 2019, 18:21:14 UTC Merge branch 'jayeshkrishna/pio2_cice_fixes_for_maint' into jayeshkrishna/scorpio_on_maint_1_0 This merge includes a minor fix in CICE required for PIO2. Although this fix is not specific to PIO2, it showed up during testing with PIO2. [BFB] 03 October 2019, 18:21:14 UTC
f79c19d Jayesh Krishna 03 October 2019, 18:19:55 UTC Merge branch 'jayeshkrishna/pio2_clm_mosart_fixes_for_maint' into jayeshkrishna/scorpio_on_maint_1_0 This merge includes some fixes in CLM and Mosart required for PIO2. Although these fixes are not specific to PIO2, they showed up during testing with PIO2. See #2778 [BFB] 03 October 2019, 18:19:55 UTC
c413fb2 Jayesh Krishna 03 October 2019, 18:19:04 UTC Merge branch 'jayeshkrishna/pio2_cam_fixes_for_maint' into jayeshkrishna/scorpio_on_maint_1_0 This merge includes some fixes in CAM required for PIO2 and adds the build script required to build HOMME on anlworkstation. Although these fixes are not specific to PIO2, they showed up during testing with PIO2. [BFB] 03 October 2019, 18:19:04 UTC
1501a9f Jayesh Krishna 03 October 2019, 18:07:54 UTC Change scorpio modules to use ssh Change scorpio modules to use ssh 03 October 2019, 18:07:54 UTC
fbe0e34 jayeshkrishna 28 August 2019, 22:21:52 UTC Updating scorpio to v1.0.1 alpha.1 Updating scorpio to v1.0.1 alpha 1 for testing 03 October 2019, 18:06:27 UTC
b384f37 jayeshkrishna 28 August 2019, 15:11:06 UTC Use BOX rearranger for E3SM Change the default rearranger in E3SM to BOX for Scorpio classic (PIO_VERSION=1) and Scorpio (PIO_VERSION=2). In our current performance tests BOX rearranger outperforms the SUBSET rearranger. 03 October 2019, 18:03:59 UTC
f77ecb1 Jayesh Krishna 03 October 2019, 18:03:11 UTC Switch to using malloc in scorpio/pio Using the BGET memory allocator is slower than using malloc. Switching from using BGET to malloc. 03 October 2019, 18:03:11 UTC
34060e8 jayeshkrishna 27 August 2019, 16:41:50 UTC Adding SCORPIO into E3SM Adding SCORPIO as submodules into E3SM * Adding SCORPIO v1.0.0 * scorpio (derived from pio2) is added in externals/scorpio scorpio classic (derived from pio1) is added in externals/scorpio_classic * scorpio_classic is the default in E3SM To switch to scorpio users can change PIO_VERSION in env_build.xml to 2 (default is 1) 03 October 2019, 18:01:30 UTC
e517812 Jayesh Krishna 03 October 2019, 17:57:40 UTC Support for scorpio in CIME Modifying the pio build script to support scorpio. Updating the directory names for scorpio. New make variables are added for the e3sm model to support scorpio (This change should not affect CESM builds). 03 October 2019, 17:57:40 UTC
2bc6b23 jayeshkrishna 27 August 2019, 15:46:41 UTC Allow CIME to specify IO lib root/dir Allow CIME to specify (overriding the defaults) the I/O library source root and source directory. If IO_LIB_SRCROOT is not specified, the PIO library included with CIME is used as the I/O library 03 October 2019, 17:54:02 UTC
5c34eb8 Jayesh Krishna 03 October 2019, 17:53:10 UTC Adding PIO source root for E3SM Adding the PIO source root directory (containing PIO1 and PIO2 sources) for the E3SM model. This source directory is only available for E3SM+CIME builds and is not set for CIME-only builds. This commit should not affect the CESM model builds. 03 October 2019, 17:53:10 UTC
ffcec5e jayeshkrishna 22 July 2019, 16:20:31 UTC Allow PIO source dir to be user configurable Adding a variable, PIO_SRCROOT, for the PIO source root directory. The user can optionally set the PIO_SRCROOT to point to a directory containing both PIO1 and PIO2 source (in subdirectories named "pio1" and "pio2"). By default this variable will point to the PIO root directory in CIME. 03 October 2019, 14:58:01 UTC
b0f51b2 Jayesh Krishna 07 January 2019, 18:13:39 UTC Fix mpi-serial + PIO2 builds Adding PIO2 configuration options required for mpi-serial. 01 October 2019, 19:51:28 UTC
39c6b2a Jayesh Krishna 08 November 2018, 15:59:54 UTC Using C++ compiler/linker for PIO2 For PIO2 we now use C++ compiler/linker. 01 October 2019, 19:51:07 UTC
c2a0362 dqwu 12 October 2018, 05:53:47 UTC Adding HDF5_PATH to CMAKE_OPTS to build PIO 01 October 2019, 19:50:34 UTC
d336ffd Jayesh Krishna 01 October 2019, 19:49:19 UTC Defining environment variable HDF5_PATH for anlworkstation Defining environment variable HDF5_PATH for anlworkstation 01 October 2019, 19:49:19 UTC
ad5e7a9 Jayesh Krishna 01 October 2019, 19:47:48 UTC Upgrading netcdf to 4.4.1 (from 4.3.3.1) for anlworkstation Upgrading netcdf to 4.4.1 (from 4.3.3.1) for anlworkstation 01 October 2019, 19:47:48 UTC
43e8ae6 Jayesh Krishna 01 October 2019, 19:44:23 UTC Changing max tasks per node to 32 (from 64) for anlworkstation Although anlworkstation/compute001 has 64 cores it is a shared machines and we don't want to run cases on all the cores. Reducing the max tasks per node from 64 to 32. 01 October 2019, 19:44:23 UTC
7e87a77 Jayesh Krishna 01 October 2019, 19:41:27 UTC Upgrading pnetcdf to 1.8.1 (from 1.6.1) for anlworkstation One reason we need this new version is because pnetcdf used to define NF_MAX_NAME and NC_MAX_NAME as different resulting in memory corruption in PIO (when copying data inside PIO, using NC_MAX_NAME, to strings from Fortran code, using NF_MAX_NAME). 01 October 2019, 19:41:27 UTC
f82fbe6 dqwu 23 March 2018, 20:27:53 UTC Turning on PIO_USE_MALLOC option 01 October 2019, 19:37:59 UTC
0372b93 Jayesh Krishna 24 March 2018, 00:26:38 UTC Fixing CICE restart fail - freeing iodesc Closing the File handle after we free the associated io descriptors. Without the change when freeing io descriptors PIO tries to perform a syncfile on the File handle (that is no longer valid because it was closed) resulting in an abort (PIO sync fails since it cannot find the file handle). 01 October 2019, 19:29:50 UTC
2abc289 Jayesh Krishna 23 March 2018, 21:10:56 UTC Fixing starts/counts for pio puts The starts/counts for puts where the vars (1d/2d/3d) had no time dimensions were wrong, i.e., always had an extra start/count corresponding to the time dimension. Now we have the starts/counts for time dimension only when the var is supposed to have multiple timesteps 01 October 2019, 19:26:41 UTC
d18fba7 dqwu 23 March 2018, 20:37:14 UTC Commenting out LND_PIO_REARRANGER entry in config_pio.xml for E3SM This setting causes LND to use a hard-coded value of 1 for I case and F case. 01 October 2019, 19:26:14 UTC
c042489 dqwu 24 March 2018, 00:45:29 UTC Updating some calls to interface shr_scam_getCloseLatLon With this fix, module procedure shr_scam_getCloseLatLonPIO is called instead of shr_scam_getCloseLatLonNC. For PIO2, the ncid returned to the user is not the actual ncid returned by the underlying netcdf/pnetcdf library. This opaque pio_ncid is unusable from outside PIO2, such as nf90_inquire calls in shr_scam_getCloseLatLonNC. 01 October 2019, 19:21:45 UTC
8c35ea2 dqwu 24 March 2018, 01:02:47 UTC Fixing a Fortran runtime error in subroutine cam_pio_get_var_3d_r8_perm Without this fix, strt and cnt are passed to pio_get_var with a hard-coded length of 3, even when ndims is 4. Also making assignment statements for strt and cnt consistent across all module procedures of interface cam_pio_get_var. 01 October 2019, 19:21:21 UTC
e4ccb14 dqwu 24 March 2018, 03:02:10 UTC Using interface shr_pio_getrearranger to set pio_rearranger In components/cam/src/utils/cam_pio_utils.F90, pio_rearranger is hard-coded to pio_rearr_subset. We should use interface shr_pio_getrearranger to read user settings from env_run.xml. Fixes #2168 01 October 2019, 19:20:48 UTC
18e8888 jayeshkrishna 07 June 2018, 21:12:22 UTC Adding cmake build script for anlworkstation Adding the HOMME cmake build script for anlworkstation. 01 October 2019, 19:19:49 UTC
5133777 noel 30 September 2019, 17:18:17 UTC Merge branch 'ndk/maint-1.0/cori-nohugepages' into maint-1.0 (PR #3147) Remove the module craype-hugepages2M for Cori. This module was added as a default module after the Cori SW upgrade. It was not expected to have an impact, and perhaps does not. However, it's best to keep environment as close as possible to what it was before upgrade. This module might be causing some non-reproducable runtime errors. [BFB] 30 September 2019, 17:18:17 UTC
53e5eef James Foucar 20 September 2019, 16:53:14 UTC Fix implementation of SVN server on maint (PR #3188) Fix implementation of SVN server on maint Just updates this file to match master. Fixes #2931 [BFB] 20 September 2019, 16:53:14 UTC
a777e82 James Foucar 20 September 2019, 16:44:34 UTC Fix implementation of SVN server on maint Just updates this file to match master. [BFB] 20 September 2019, 16:51:07 UTC
a09f343 Wuyin Lin 10 September 2019, 07:06:02 UTC Merge wlin/atm/more-hist-vars-speclevs4 into maint-1.0 (PR #3181) Enable more variables to outpit at standard level Add more variables to be able to output at following pressure levels 1000, 975, 950, 925, 900, 850, 800, 700, 600, 500, 400, 300, 200, and 100 hPa, as well as lowest model level. With these, U, V, T, Q, RH, OMEGA, Z3 can all output at these levels. [BFB] 10 September 2019, 07:06:02 UTC
e632787 Wuyin Lin 10 September 2019, 05:41:53 UTC Add outfld call to output RH950. 10 September 2019, 05:41:53 UTC
56a7023 Wuyin Lin 10 September 2019, 05:34:09 UTC Enable more variables to outpit at standard levels Add more variables to be able to output at following pressure levels 1000, 975, 950, 925, 900, 850, 800, 700, 600, 500, 400, 300, 200, and 100 hPa, as well as lowest model level. With these, U, V, T, Q, RH, OMEGA, Z3 can all output at these levels. [BFB] 10 September 2019, 05:34:09 UTC
7d8161e Wuyin Lin 09 September 2019, 22:41:15 UTC Merge wlin/atm/more-hist-vars-speclevs2 (PR #3179) Add further specified levels for T and Q output Add additional levels as needed to allow T and Q output at 1000, 975, 950, 925, 900, 850, 800, 700, 600, 500, 400, 300, 200 and 100 hPa. [BFB] 09 September 2019, 22:41:15 UTC
d77e612 Wuyin Lin 09 September 2019, 21:46:32 UTC Add further specified levels for T and Q output Add additional levels as needed to allow T and Q output at 1000, 975, 950, 925, 900, 850, 800, 700, 600, 500, 400, 300, 200 and 100 hPa 09 September 2019, 21:46:32 UTC
79b331c Jon Wolfe 09 September 2019, 21:12:56 UTC Merge branch 'jonbob/maint-1.0/modify-high-frequency-output' into maint-1.0 (PR #3177) Change ocean high-frequency output to daily, remove duplicate field from stream This PR brings in a small change to the mpas-ocean streams file, making the output interval daily for the high-frequency stream as requested for high-res simulations. It also removes a duplicate field from that stream definition. 09 September 2019, 21:12:56 UTC
4b739b3 Jon Wolfe 09 September 2019, 20:42:34 UTC Change high-frequency output to daily, remove duplicate field from stream 09 September 2019, 20:42:34 UTC
586cac6 Wuyin Lin 04 September 2019, 22:32:01 UTC Merge wlin/atm/more-hist-vars-speclevs (PR #3175) Add new history variables at selected levels Enable several fields at selected levels as standalone history variables. The new fields include geopotential height at 925 hPa, specific humidity at 500 hPa, and u- and v-wind components at 925 and 500 hPa. Typo errors for several longname description of existing history variables (Z1000, Q200) are also corrected. [BFB] 04 September 2019, 22:32:01 UTC
dc8ac29 Wuyin Lin 04 September 2019, 20:38:04 UTC Add new history variables at selected levels Enable several fields at selected levels as standalone history variables. The new fields include geopotential height at 925 hPa, specific humidity at 500 hPa, and u- and v-wind components at 925 and 500 hPa. Typo errors for several longname description of existing history variables (Z1000, Q200) are also corrected. [BFB] 04 September 2019, 20:38:04 UTC
b98fcc0 Robert Jacob 31 August 2019, 16:23:02 UTC Merge branch 'rljacob/maint-1.0/nc4tonc3-2' to maint-1-0 (PR #3148) Update CMIP6, scam cases to use netcdf3 For maint-1.0, update CMIP6, scam cases that were using a netcdf4 file to instead use the netcdf3 version. This will allow pnetcdf3 to be used for all these cases. Only atmosphere files were changed. CMIP6 1850 and 20TR cases with and without BGC were updated. Also SSP585 and 2 scam use cases. This update to maint-1.0 will be brought forward to master later. [BFB] 31 August 2019, 16:23:02 UTC
5157bb9 Balwinder Singh 30 August 2019, 23:08:12 UTC Merge branch 'singhbalwinder/atm/add-aerosol-diags' into maint-1.0 ... ...(PR #3149) Adds AODALL to compute total aerosol (incl. nighttime) optical depth Aerosol optical depth (AOD) and column burden are currently calculated in the model during daytime only, which makes the burden output little useful. This module is modified to calculate burden and total optical depth during nighttime as well. The burden diagnostic variables already exist in the model but a new variable AODALL is added in order to keep the original one (AODVIS). The 2-D burden variables for each size mode (BURDEN1, BURDEN2, …), four of them for the default configuration, are moved out of the "history_verbose" if loop, so that they can be written out when history_aero_optics is set to "true". [BFB] - Bit-For-Bit * singhbalwinder/atm/add-aerosol-diags: Adds AODALL to compute total aerosol (incl. nighttime) optical depth 30 August 2019, 23:08:12 UTC
1606ba6 Robert Jacob 30 August 2019, 16:56:36 UTC Update CMIP6 SSP585 case to use netcdf3 input Update CMIP6 SSP585 case to use netcdf3 input 30 August 2019, 16:56:36 UTC
30620d9 Azamat Mametjanov 28 August 2019, 20:31:04 UTC Merge branch 'azamat/theta-maint-1.0/update-queue-policies' into maint-1.0 (PR #3144) Update queue policy on Theta for maint-1.0 Addresses E3SM-Project/E3SM#3099 [BFB] 28 August 2019, 20:31:04 UTC
790f41c Balwinder Singh 21 August 2019, 21:37:22 UTC Adds AODALL to compute total aerosol (incl. nighttime) optical depth Aerosol optical depth (AOD) and column burden are currently calculated in the model during daytime only, which makes the burden output little useful. This module is modified to calculate burden and total optical depth during nighttime as well. The burden diagnostic variables already exist in the model but a new variable AODALL is added in order to keep the original one (AODVIS). The 2-D burden variables for each size mode (BURDEN1, BURDEN2, …), four of them for the default configuration, are moved out of the "history_verbose" if loop, so that they can be written out when history_aero_optics is set to "true". [BFB] - Bit-For-Bit 21 August 2019, 21:37:22 UTC
fe24c25 Robert Jacob 09 July 2019, 22:46:25 UTC Remove setting of netcdf type Remove setting of PIO_TYPENAME to netcdf. Don't need that now that input files are in netcdf3 classic format. Allows pnetcdf to be used. 21 August 2019, 20:15:46 UTC
9ea2e35 Robert Jacob 21 August 2019, 20:11:32 UTC Update scam, CMIP6 1850, 20TR cases to use netcdf3 input Update CMIP6 1850 and 20TR cases with and without BGC to use atm input files in netcdf3 format. Also update 2 scam cases. 21 August 2019, 20:11:32 UTC
fb298f9 noel 21 August 2019, 18:35:42 UTC Remove the module craype-hugepages2M for Cori. It was added as a default module after the Cori SW upgrade. It was not expected to have an impact, and perhaps does not. However, it's best to keep environment as close as possible to what it was before upgrade. This module *might* be causing some non-reproducable runtime errors. [bfb] 21 August 2019, 18:35:42 UTC
4c799a8 Azamat Mametjanov 20 August 2019, 21:30:43 UTC Update queue policy on Theta for maint-1.0 20 August 2019, 21:30:43 UTC
c06eaeb James Foucar 13 August 2019, 18:41:32 UTC bless_test_results: hot fix to handle empty bless logs [BFB] 13 August 2019, 18:41:32 UTC
0c41805 Robert Jacob 02 August 2019, 22:29:48 UTC Merge 'rljacob/maint-1.0/fixtesttypo' (PR #3108) Fix typo in a test added to e3sm_prod [BFB] 02 August 2019, 22:29:48 UTC
98709e8 Robert Jacob 02 August 2019, 22:22:42 UTC Fix typo in production test Fix typo in a test added to e3sm_prod 02 August 2019, 22:22:42 UTC
d4e490d noel 02 August 2019, 01:35:35 UTC Merge branch E3SM-Project/ndk/maint-1.0/cori-july2019-upgradeb (PR #3104) Update maint-1.0 module versions for Cori after July 2019 maint upgrade 02 August 2019, 01:35:35 UTC
055e950 noel 31 July 2019, 22:27:01 UTC Update module versions for Cori (cori-knl and cori-haswell) after Cori maintenance and SW upgrade. Compiler version is the same, but several others are now different. cray-mpich/7.7.0 --> cray-mpich/7.7.6 PrgEnv-intel/6.0.4 --> PrgEnv-intel/6.0.5 craype/2.5.14 --> craype/2.5.18 pmi/5.0.13 --> pmi/5.0.14 cray-netcdf-hdf5parallel/4.4.1.1.6 --> cray-netcdf-hdf5parallel/4.6.1.3 cray-hdf5-parallel/1.10.1.1 --> cray-hdf5-parallel/1.10.2.0 cray-parallel-netcdf/1.8.1.3 --> cray-parallel-netcdf/1.8.1.4 cmake/3.11.4 --> cmake/3.14.4 PrgEnv-gnu/6.0.4 --> PrgEnv-gnu/6.0.5 gcc/7.3.0 --> gcc/8.2.0 cray-libsci/18.03.1 --> cray-libsci/19.02.1 31 July 2019, 22:27:01 UTC
cfb1e00 Robert Jacob 24 July 2019, 03:49:47 UTC Merge branch 'susburrows/machinefiles/constance' to maint-1.0 (PR #3068) Update machine and compiler configurations for PNNL constance machine in order to correctly identify the pnetcdf library path, fixing an issue with MPAS builds that was previously documented for ANL machines (ef09b52). [BFB] 24 July 2019, 03:49:47 UTC
1ce481b “Jon 22 July 2019, 20:42:55 UTC Merge branch 'jonbob/maint-1.0/compy-pecounts' into maint-1.0 (PR #3084) Update default compy layouts to reflect slower MPAS-O on maint-1.0 This PR updates the default "L" and "XL" pecounts for B-cases on compy from those optimized for master. The maint-1.0 branch still has shorter timesteps for mpas-o so the ocean requires more processors than master does for efficient layouts. [BFB] 22 July 2019, 20:42:55 UTC
d84d758 “Jon 22 July 2019, 19:30:46 UTC Update default compy layouts to reflect slower MPAS-O on maint-1.0 22 July 2019, 19:30:46 UTC
11ac98f “Jon 22 July 2019, 18:16:45 UTC Merge branch 'mt/allreduce-issue-workaround' into maint-1.0 (PR #3083) Switch mpi_allreduce to use MPI_IN_PLACE This PR brings in a workaround for an array corruption issue possibly caused by mpi_allreduce Fixes #3082 [BFB] 22 July 2019, 18:16:45 UTC
0619441 Mark Taylor 22 July 2019, 15:40:42 UTC switch mpi_allreduce to use MPI_IN_PLACE workaround for an array corruption issue possibly caused by mpi_allreduce fixes #3082 *********1*********2*********3*********4*********5*********6*********7** Longer commit message body describing the commit. Can contain lists as follows: * Item 1 * Item 2 * Item 3 A good commit message should be written like an email, a subject followed by a blank line, followed by a more descriptive body. Can also contain a tag at the bottom describing what type of commit this is. [BFB] - Bit-For-Bit [FCC] - Flag Climate Changing [Non-BFB] - Non Bit-For-Bit [CC] - Climate Changing [NML] - Namelist Changing See confluence for a more detailed description about these tags. 22 July 2019, 15:40:42 UTC
9242f48 Robert Jacob 19 July 2019, 03:52:29 UTC Merge branch 'rjacob/test/addTRtest' into maint-1.0 (PR #3077) Add test of transient water cycle fully coupled case to production suite for maint1.0. This will read in a few different input files compared to the PI case. [BFB] 19 July 2019, 03:52:29 UTC
ba63d82 Robert Jacob 18 July 2019, 18:27:47 UTC Add transient test to production for maint1.0 Add transient test to production for maint1.0 [BFB] 18 July 2019, 18:27:47 UTC
9bc31c5 Jon Wolfe 16 July 2019, 17:13:09 UTC Merge branch 'mark-petersen/maint-1.0/captureEdgeTracerFluxes' into maint-1.0 (PR #3054) Update mpas-ocean to capture edge fluxes This PR is identical to #2760, but for maint-1.0. It adds variables within tracer_advection_mono to capture the edge based fluxes of temperature and salinity to fully close the heat and salinity budgets regionally. [BFB] 16 July 2019, 17:13:09 UTC
f548ec2 Susannah Burrows 12 July 2019, 22:10:34 UTC Fix pnetcdf issue on constance Update machine and compiler configurations for PNNL constance machine in order to correctly identify the pnetcdf library path, fixing an issue with MPAS builds that was previously documented for ANL machines (Issue #910). Fixes #910 [BFB] 12 July 2019, 22:10:34 UTC
b606e49 mark-petersen 12 July 2019, 14:11:54 UTC update mpas-source:Increase AM dimension from 32 to 36 12 July 2019, 14:11:54 UTC
0a4b40e mark-petersen 12 July 2019, 13:41:56 UTC update mpas-source:Change start index from 1 to 2 on activeTracerVerticalAdvectionTopFlux 12 July 2019, 13:41:56 UTC
db8823e mark-petersen 10 July 2019, 15:06:42 UTC Add edge flux variables to stream 10 July 2019, 15:15:54 UTC
2394264 mark-petersen 10 July 2019, 14:54:11 UTC Update mpas ocean to capture edge fluxes 10 July 2019, 15:15:46 UTC
9fc77cb Jon Wolfe 08 July 2019, 18:32:09 UTC Merge branch 'mark-petersen/addTimeSeriesMaxMin_maint1.0' into maint-1.0 (PR #2951) Add ocean ability to output max and min quantities in timeSeriesMonthly This PR adds the ability for mpas-ocean to output maximum and minimum observed quantities for each month. It utilizes the current timeseries AM functionality. It brings in a new mpas-source submodule and corresponding changes to the scripts. [BFB] [NML] 08 July 2019, 18:32:09 UTC
78d52d8 Jon Wolfe 08 July 2019, 18:16:40 UTC Update ocean output fields in two streams. 08 July 2019, 18:16:40 UTC
37b4456 Robert Jacob 28 June 2019, 19:13:01 UTC Merge branch 'rljacob/mach/add-anvil-1.0' into maint-1.0 (PR #3023) Add compy to the maint-1.0 machine files. Allow compiling with PGI or Intel using special wrapper scripts for IntelMPI. Add pelayouts from master. Use the settings that were on master as of 88f572f except: Change ne4 pelayouts to be 80 tasks. Also fix a couple of general maint-1.0 bugs: Fix a badly defined compset in EAM. Fix a bug in cime preventing the use of conditionally defined MPI wrappers. Fixes #3020 Fixes #3027 28 June 2019, 19:13:01 UTC
095001e Robert Jacob 27 June 2019, 23:54:55 UTC Fix pnetcdf path for compy maint-1.0 Define the PNETCDF_PATH in config_machines using the environment. Also allow mpi-serial to be an option. 27 June 2019, 23:54:55 UTC
b738e16 Robert Jacob 27 June 2019, 22:52:13 UTC Get intel working. Fix pe layouts for mpas cice Intel compier with IntelMPI is now working. Also get PGI working with IntelMPI using different mpi wrapper scripts. Change pe layouts to use MPASCICE which is still its name in maint-1.0G 27 June 2019, 22:52:13 UTC
7535bb3 Robert Jacob 27 June 2019, 21:31:52 UTC Fix bug in cime macrowriterbase Fix bug in cime macrowriterbase that prevented condtionally redefining the mpi wrapper with something like: <MPIFC MPILIB="impi"> mpiifort </MPIFC> Without this fix, two compilers would appear on a compile line: mpif90 mpiifort file.F90 27 June 2019, 21:31:52 UTC
a2bbab3 Robert Jacob 27 June 2019, 20:13:20 UTC Remove old ornl data server Remove old ornl data server from config_inputdata.xml 27 June 2019, 20:13:20 UTC
6cdee77 Robert Jacob 27 June 2019, 00:36:56 UTC Add pelayouts for compy Add pelayouts for compy. Same as on master as of 88f572f6 but make sure ne4 only uses 80 tasks. 27 June 2019, 00:36:56 UTC
2a79a1c Robert Jacob 27 June 2019, 00:32:55 UTC Fix error in cam compsets Fix formatting error in cam config_compsets.xml that resulted in "ERROR: Multiple matches" from create_newcase Error was only seen if you used a case that was after the bad line. 27 June 2019, 00:32:55 UTC
05c1a6c Robert Jacob 25 June 2019, 20:36:12 UTC Add compy to machine files for maint-1.0 Add compy with slurm and intel and pgi compilers to the maint-1.0 machines. 25 June 2019, 20:36:12 UTC
f29e48d mark-petersen 25 June 2019, 20:24:43 UTC Remove flag config_ecosys_atm_alt_co2_use_eco from namelist defaults 25 June 2019, 20:24:43 UTC
48ce2d3 Jon Wolfe 13 June 2019, 15:06:54 UTC Add new restart streams to mpas-ocean buildnml 25 June 2019, 20:16:31 UTC
b96053f Jon Wolfe 12 June 2019, 22:01:19 UTC Update groups in mpas-ocean build-namelist script 25 June 2019, 20:16:31 UTC
aa5115a Jon Wolfe 12 June 2019, 20:31:45 UTC Change default settings to enable new streams files 25 June 2019, 20:16:31 UTC
66621db Jon Wolfe 11 June 2019, 21:23:08 UTC Add new mpas-ocean streams to bld scripts 25 June 2019, 20:16:31 UTC
faa8982 Jon Wolfe 11 June 2019, 20:36:27 UTC Update bld scripts to match changes to mpas-ocean Registry 25 June 2019, 20:16:31 UTC
f5892eb mark-petersen 29 May 2019, 14:27:35 UTC Update mpas-source for addTimeSeriesMaxMin 25 June 2019, 20:16:31 UTC
d02249d Jason Sarich 14 June 2019, 17:38:22 UTC Merge branch 'jonbob/maint-1.0/update-anvil' into maint-1.0 PR #2914 This PR brings in support for maint-1.0 to run on anvil (centos6) after recent machine changes -- slurm queue and different login node. It does not change the soft modules which all appear to still be available, so should be bfb. [BFB] 14 June 2019, 17:38:22 UTC
524f049 Wuyin Lin 12 June 2019, 21:10:19 UTC Merge tangq/cam/F2010-HR-compset into maint-1.0 (PR #2758) This PR created the F2010 HR compset with CMIP6 forcings. The compset name is F2010C5-CMIP6-HR. - It uses daily 0.25 degree sst_seaice data. - atm and lnd initial conditions from an ne120 nudging simulation - Classical Nucleation Theory (CNT) for ice deposition growth is turned off - Include atm and lnd use_case files specifically for this compset [BFB] for existing compsets. 12 June 2019, 21:10:19 UTC
bf8255c Gautam Bisht 05 June 2019, 19:23:51 UTC Merge branch 'cameronsmith1/compset/SSP585-watercycle-1.0_cleanup' into maint-1.0 (PR #2971) Removed options from the SSP5_8.5 definitions that are not used by E3SMv1. There is no change to the output from any compset. These changes are just to avoid confusion in the future when people want to examine or modify the SSP5_8.5 compset. components/cam/bld/namelist_files/use_cases/SSP585_cam5_CMIP6.xml : l_ieflx_fix removed. This option is now controlled by ieflx_opt. components/clm/bld/namelist_files/use_cases/2015-2100_SSP585_transient.xml : clm4.0 & 5.0 options removed because E3SM doesn't support those versions. clm4.5 options commented out, because they are not used for the watercycle configuration. However, they need to be activated and set correctly for the BGC configuration. [BFB] 05 June 2019, 19:23:51 UTC
back to top