| 741ae18 | AlexF | 18 August 2017, 15:09:18 UTC | #2922 - start work on other cell populations | 18 August 2017, 15:09:18 UTC |
| 1e55e2a | Fergus Cooper | 18 August 2017, 10:33:41 UTC | #2922 Rebuilt archive after adding members in AbstractCellWriter.hpp | 18 August 2017, 10:33:41 UTC |
| 34c07af | Fergus Cooper | 16 August 2017, 16:18:42 UTC | Updated WriteVtkResultsToFile() The previous version assumed a 1:1 correspondence between nodes and cells, which would have almost certainly tripped up in parallel. This version should work as well as the original in parallel. | 16 August 2017, 16:18:42 UTC |
| e4fd475 | Fergus Cooper | 15 August 2017, 18:52:12 UTC | Merge | 15 August 2017, 18:52:12 UTC |
| b62cd84 | Fergus Cooper | 15 August 2017, 18:41:39 UTC | Reorder includes | 15 August 2017, 18:50:00 UTC |
| 511f1da | Fergus Cooper | 15 August 2017, 18:41:31 UTC | Implement tests for CellAppliedForceWriter and default base class methods | 15 August 2017, 18:50:00 UTC |
| 69a3b88 | Fergus Cooper | 15 August 2017, 18:33:02 UTC | Change method to use scalar_vector | 15 August 2017, 18:50:00 UTC |
| 77c02d3 | Fergus Cooper | 15 August 2017, 18:32:15 UTC | Remove the set methods for boolean flags There is no reason ever to call these methods | 15 August 2017, 18:50:00 UTC |
| dd4ea66 | Fergus Cooper | 15 August 2017, 18:31:06 UTC | Added a cell writer for applied force This makes use of the new vector output, providing an example as well as allowing adequate testing of the new methods in AbstractCellWriter | 15 August 2017, 18:50:00 UTC |
| dbad9a0 | Fergus Cooper | 11 August 2017, 18:17:58 UTC | [ticket_2922] Set default string values for cell writers | 15 August 2017, 18:50:00 UTC |
| e2a5e28 | Fergus Cooper | 10 August 2017, 13:00:20 UTC | [ticket_2922] Working prototype with infrastructure for node based cell populations Does not yet implement tests including coverage | 15 August 2017, 18:50:00 UTC |
| 3ca04dd | AlexF | 15 August 2017, 15:48:11 UTC | #2870 - fix copyrights | 15 August 2017, 15:48:11 UTC |
| 7351eb5 | AlexF | 15 August 2017, 15:16:22 UTC | Merge branch 'develop' of https://chaste.cs.ox.ac.uk/git/chaste into develop | 15 August 2017, 15:16:22 UTC |
| 4010017 | AlexF | 15 August 2017, 15:16:10 UTC | #2925 - fix parallel failures in TestNodesOnlyMesh | 15 August 2017, 15:16:10 UTC |
| 9566159 | Jochen Kursawe | 15 August 2017, 14:55:06 UTC | Merge branch 'develop' into ticket_2871 | 15 August 2017, 14:55:06 UTC |
| daea234 | Jochen Kursawe | 15 August 2017, 14:48:55 UTC | Merge branch 'develop' of https://chaste.cs.ox.ac.uk/git/chaste into develop | 15 August 2017, 14:48:55 UTC |
| 17deb0f | Jochen Kursawe | 15 August 2017, 14:47:49 UTC | Merge branch 'ticket_2870' into develop | 15 August 2017, 14:47:49 UTC |
| 16c2bef | Fergus Cooper | 15 August 2017, 13:24:00 UTC | Include <functional> for std::bind | 15 August 2017, 13:24:00 UTC |
| 36820f6 | Jochen Kursawe | 15 August 2017, 10:48:46 UTC | updating documentation of new member variable | 15 August 2017, 10:48:46 UTC |
| 6aed1fc | Jochen Kursawe | 15 August 2017, 09:38:59 UTC | Merge branch 'develop' into ticket_2915 | 15 August 2017, 09:38:59 UTC |
| 147e43b | AlexF | 14 August 2017, 17:10:39 UTC | #2925 - copy node attributes in NodesOnlyMesh construction method and in centre-based cell divisions | 14 August 2017, 17:10:39 UTC |
| 9155f7f | Fergus Cooper | 10 August 2017, 13:00:20 UTC | [ticket_2922] Working prototype with infrastructure for node based cell populations Does not yet implement tests including coverage | 10 August 2017, 13:00:20 UTC |
| 48d8cc8 | Gary Mirams | 01 August 2017, 14:17:08 UTC | Add eclipse-egit to chaste dependencies | 01 August 2017, 14:17:08 UTC |
| 170fcbf | Joe Pitt-Francis | 21 July 2017, 14:35:31 UTC | #2893 Support Boost 1.64 BOOST_ARCHIVE_VERSION | 21 July 2017, 14:35:31 UTC |
| 79fb2e8 | Gary Mirams | 19 July 2017, 02:19:51 UTC | Merge branch 'develop' of https://chaste.cs.ox.ac.uk/git/chaste into develop | 19 July 2017, 02:19:51 UTC |
| 14d05c0 | Gary Mirams | 19 July 2017, 02:19:13 UTC | Remove old hostconfigs | 19 July 2017, 02:19:13 UTC |
| 334462a | Jonathan Cooper | 13 July 2017, 14:44:00 UTC | Merge branch 'deprecation_flag' into develop Tested with scons on muck and verified to work. | 13 July 2017, 14:44:00 UTC |
| 2f41c7c | Joe Pitt-Francis | 10 July 2017, 16:15:15 UTC | #2910 Fix PLoS crypt archiving by making sure that NodesOnlyMesh doesn't repeat indices | 10 July 2017, 16:15:15 UTC |
| 0dd867b | Joe Pitt-Francis | 07 July 2017, 16:39:39 UTC | Merge branch 'develop' into ticket_2910 | 07 July 2017, 16:39:39 UTC |
| ab09bec | Joe Pitt-Francis | 07 July 2017, 16:33:50 UTC | #2910 Fix missing private member in archive (should have happened with changeset:f4ed9df/git_repo) and beef up the test. | 07 July 2017, 16:33:50 UTC |
| 15481c4 | Joe Pitt-Francis | 07 July 2017, 15:06:51 UTC | #2910 Remove experiment branch code for indexing nodes via the population | 07 July 2017, 15:06:51 UTC |
| 46ba053 | Joe Pitt-Francis | 07 July 2017, 15:00:57 UTC | #2910 Correct an off-by-one error in vector allocation | 07 July 2017, 15:00:57 UTC |
| f4ed9df | Joe Pitt-Francis | 05 July 2017, 17:18:45 UTC | #2910 NodesOnlyMesh now archives information about the live indices which are attached to its nodes | 05 July 2017, 17:18:45 UTC |
| 7971b0b | Joe Pitt-Francis | 03 July 2017, 14:40:19 UTC | #2911 Fix changeset:6951e5c/git_repo for Git version 2.11 on 17.04 | 03 July 2017, 14:40:19 UTC |
| f48fc36 | Fergus Cooper | 03 July 2017, 11:18:22 UTC | #2811 Turn off deprecation warnings for intel compiler Older Intel 2015 doesn't know about -Wno-deprecated-declarations, and instead wants -wr1478 | 03 July 2017, 11:18:22 UTC |
| ecd1c33 | Jonathan Cooper | 30 June 2017, 09:53:37 UTC | Make `CHASTE_LIBS` default to empty string not `None` Otherwise the scons test runner falls over. | 30 June 2017, 09:53:37 UTC |
| 34607a6 | Michael Clerx (UM) | 29 June 2017, 14:12:56 UTC | Made scons remember CHASTE_LIBS environment variable used to find petsc on fedora systems. | 29 June 2017, 14:12:56 UTC |
| 498c484 | Gary Mirams | 28 June 2017, 15:47:26 UTC | Get PyCML to put a nice comment by the 'push_back's in OdeSystemInformation to make it easier to see what is what. | 28 June 2017, 15:47:26 UTC |
| b6c079d | Michael Clerx (UM) | 27 June 2017, 22:46:34 UTC | Hacked Fedora scons config to make basic stuff work. | 27 June 2017, 22:46:34 UTC |
| 812b67e | Michael Clerx (UM) | 27 June 2017, 20:06:44 UTC | Updated link to wiki page in scons script. | 27 June 2017, 20:06:44 UTC |
| 21cad46 | Fergus Cooper | 24 June 2017, 15:21:02 UTC | Remove -std=c++11 from CMAKE_C_FLAGS The default_flags list prepends the list of CMAKE_C_FLAGS as well as CMAKE_CXX_FLAGS, and it's not a legal c flag | 24 June 2017, 15:21:02 UTC |
| 4f0857f | Fergus Cooper | 23 June 2017, 15:45:36 UTC | Simplify setting C++11 compiler flag Removes all conditional checks on CMake version and standardises the flag used between different compilers which may resolve gnu++11 problems with the intel compiler on Arcus | 23 June 2017, 15:45:36 UTC |
| eaad686 | Jochen Kursawe | 22 June 2017, 14:49:17 UTC | make swapping function virtual | 22 June 2017, 14:49:17 UTC |
| abfdb21 | Jochen Kursawe | 22 June 2017, 13:21:43 UTC | add archiving code and test | 22 June 2017, 13:21:43 UTC |
| f978898 | Jochen Kursawe | 22 June 2017, 11:42:16 UTC | implementing main ticket change | 22 June 2017, 11:42:16 UTC |
| c28a0f8 | Fergus Cooper | 22 June 2017, 10:44:49 UTC | Add python script for cross-platform OS name | 22 June 2017, 10:44:49 UTC |
| 53be809 | Michael Clerx (UM) | 21 June 2017, 15:48:37 UTC | Updated python hostconfig files to detect fedora, assuming petsc version given in the installation guide was used. | 21 June 2017, 15:48:37 UTC |
| c06bd0b | Fergus Cooper | 21 June 2017, 10:54:22 UTC | #2811 Add a doxygen string for macro definition | 21 June 2017, 10:54:22 UTC |
| 6b391cd | Fergus Cooper | 21 June 2017, 10:38:52 UTC | Remove redundant PARMETIS check This check tries to compile a c file and is very fragile. FindParMETIS.cmake already locates headers and libraries, so this test is not adding much. | 21 June 2017, 10:38:52 UTC |
| 4513d4a | Fergus Cooper | 21 June 2017, 10:14:13 UTC | Added new targets for chaste_core and chaste_all_components These will build the core components and all components, respectively, without compiling any of the tests. The chaste_all_components will be used for the compiler buildbot builders | 21 June 2017, 10:14:13 UTC |
| 1b69518 | Fergus Cooper | 20 June 2017, 14:06:01 UTC | #2811 CMake versions older than 3.6 can't query the intel compiler So we have to set the C++11 flag manually, rather than relying on the CXX_STANDARD CMake property | 20 June 2017, 14:06:01 UTC |
| 59d6209 | Fergus Cooper | 20 June 2017, 11:39:41 UTC | Merge C++11 changes into develop | 20 June 2017, 11:40:47 UTC |
| b7fae02 | Fergus Cooper | 20 June 2017, 11:25:33 UTC | #2811 Flags should be on for all compilers | 20 June 2017, 11:25:33 UTC |
| 7152eb9 | Jochen Kursawe | 19 June 2017, 16:48:56 UTC | changing simulation run time | 19 June 2017, 16:48:56 UTC |
| b94777b | Jochen Kursawe | 19 June 2017, 16:39:45 UTC | adding vertex simulation test with free boundary for profiling | 19 June 2017, 16:39:45 UTC |
| 69963ca | Fergus Cooper | 19 June 2017, 10:58:37 UTC | Merge branch 'develop' into c++14 | 19 June 2017, 10:58:37 UTC |
| 4e2af94 | Fergus Cooper | 19 June 2017, 10:44:30 UTC | #2916 Fix failing weekly TestCardiacElectroMechanicsOnEllipsoid Use "critical point" rather than "backtracking" line search algorithm. | 19 June 2017, 10:44:30 UTC |
| 89ff6ef | Gary Mirams | 16 June 2017, 12:06:53 UTC | Make Readme a bit more markdown | 16 June 2017, 12:06:53 UTC |
| 5290a4c | Gary Mirams | 16 June 2017, 11:53:48 UTC | Go to a markdown readme file for github front page | 16 June 2017, 11:53:48 UTC |
| 7ed34d0 | Gary Mirams | 16 June 2017, 10:53:59 UTC | Oops, try and fix weekly PyCML | 16 June 2017, 10:53:59 UTC |
| c6c0982 | Fergus Cooper | 15 June 2017, 17:02:34 UTC | #2910 Implement Ozzy's changes to archive the node indices Archive now loads correctly ("Requested node 4 does not belong to process 0") | 15 June 2017, 17:02:34 UTC |
| 23a2e0e | Fergus Cooper | 15 June 2017, 17:01:13 UTC | #2910 Add test that fails with current develop branch Test creates a small cell population, kills several cells, archives the simulation, and tries to load the archive and continue the simulation | 15 June 2017, 17:01:13 UTC |
| b82de73 | Fergus Cooper | 15 June 2017, 14:36:46 UTC | #2811 Better fix for boost scoped nums | 15 June 2017, 14:36:46 UTC |
| dad905d | Fergus Cooper | 15 June 2017, 11:07:38 UTC | Re-fix nullptr after merge | 15 June 2017, 11:07:38 UTC |
| 9c08b7c | Fergus Cooper | 15 June 2017, 11:04:28 UTC | Merge branch 'develop' into c++14 | 15 June 2017, 11:04:28 UTC |
| 28cd5ab | Fergus Cooper | 15 June 2017, 09:41:23 UTC | Making timing allowance for overloaded testing machine | 15 June 2017, 09:41:23 UTC |
| 4ba4dee | Gary Mirams | 14 June 2017, 22:08:43 UTC | #2845 get up to date with Fergus' changes! | 14 June 2017, 22:08:43 UTC |
| 8378f65 | Fergus Cooper | 14 June 2017, 21:28:06 UTC | #2917 Implement changes to project version reporting | 14 June 2017, 21:28:06 UTC |
| 4417e30 | Gary Mirams | 14 June 2017, 17:30:47 UTC | Correct cmake display of git hash revision | 14 June 2017, 17:30:47 UTC |
| 6951e5c | Gary Mirams | 14 June 2017, 17:30:17 UTC | #2845 get git and svn revisions in build info working. | 14 June 2017, 17:30:17 UTC |
| fc48608 | Gary Mirams | 14 June 2017, 16:16:53 UTC | Another attempt at weekly test | 14 June 2017, 16:16:53 UTC |
| 44832ab | Gary Mirams | 14 June 2017, 10:46:10 UTC | Add a method to suppress output from SteadyStateRunner for use in Sanmitra's project... | 14 June 2017, 10:46:10 UTC |
| f76ae0d | Jochen Kursawe | 13 June 2017, 17:29:19 UTC | changing the test slightly | 13 June 2017, 17:29:19 UTC |
| 9bb161b | Jochen Kursawe | 13 June 2017, 16:28:13 UTC | Merge branch 'develop' into ticket_2871 | 13 June 2017, 16:28:13 UTC |
| 06bae2e | Jochen Kursawe | 13 June 2017, 16:28:06 UTC | adding vertex movement restriction feature | 13 June 2017, 16:28:06 UTC |
| af6d70c | Jochen Kursawe | 13 June 2017, 15:54:44 UTC | fixing more coverage | 13 June 2017, 15:54:44 UTC |
| 0c0b748 | Jochen Kursawe | 13 June 2017, 15:10:12 UTC | fixing doxygen coverage | 13 June 2017, 15:10:12 UTC |
| af9e806 | Jochen Kursawe | 13 June 2017, 14:58:10 UTC | fixing coverage | 13 June 2017, 14:58:10 UTC |
| f9db805 | Gary Mirams | 13 June 2017, 14:24:19 UTC | Fix nightly PyCML test. | 13 June 2017, 14:24:19 UTC |
| 95fa04e | Jochen Kursawe | 13 June 2017, 13:36:25 UTC | fixing coverage | 13 June 2017, 13:36:25 UTC |
| 40bab24 | Fergus Cooper | 13 June 2017, 13:25:00 UTC | Remove Tabs And Trailing Whitespace | 13 June 2017, 13:25:00 UTC |
| aac0aa1 | Jochen Kursawe | 13 June 2017, 10:08:43 UTC | Merge branch 'develop' into ticket_2870 | 13 June 2017, 10:08:43 UTC |
| d2ec5d1 | Fergus Cooper | 11 June 2017, 18:25:41 UTC | Replace NULL wtih nullptr | 11 June 2017, 18:25:41 UTC |
| 38975cb | Fergus Cooper | 11 June 2017, 15:19:10 UTC | Merge branch 'develop' into c++14 | 11 June 2017, 15:19:10 UTC |
| 32942c8 | Fergus Cooper | 10 June 2017, 22:01:05 UTC | Fix unnecessary copy initializations Fix variables copy-constructed from const references and not modified: make them const refs too | 10 June 2017, 22:01:05 UTC |
| 77f8fff | Fergus Cooper | 10 June 2017, 19:32:10 UTC | Turn on more clang tidy tests | 10 June 2017, 19:32:10 UTC |
| 9e502b8 | Fergus Cooper | 10 June 2017, 16:46:02 UTC | Make weekly crypt test much less picky Check number of cells at end is within a range, rather than equal to specific values depending on compiler versions. | 10 June 2017, 16:46:02 UTC |
| ee04a28 | Fergus Cooper | 10 June 2017, 13:20:21 UTC | Add some trace to determine OS version during configure This isn't essential, but particularly for debugging on the buildbot interface it would be useful to know which OS version was used for historic builds | 10 June 2017, 13:20:21 UTC |
| ef75f25 | Fergus Cooper | 10 June 2017, 11:22:46 UTC | Changed various cmake messages to type STATUS CMake displays STATUS messages on stdout and all other message types on stderr, so anything "expected" should probably be a STATUS | 10 June 2017, 11:22:46 UTC |
| bfe5ae3 | Fergus Cooper | 10 June 2017, 11:18:40 UTC | Print version number of compiler during configure | 10 June 2017, 11:18:40 UTC |
| 8eab874 | Fergus Cooper | 09 June 2017, 22:27:56 UTC | Rename make target | 09 June 2017, 22:27:56 UTC |
| 173ce94 | Fergus Cooper | 09 June 2017, 22:19:55 UTC | Add cmake infrastructure for clang_tidy target | 09 June 2017, 22:19:55 UTC |
| 59be7df | Fergus Cooper | 09 June 2017, 22:17:03 UTC | Add .clang_tidy config file | 09 June 2017, 22:17:03 UTC |
| ae1aeff | Fergus Cooper | 09 June 2017, 21:26:36 UTC | Fix previous commit Apple clang uses different version numbering! Why couldn't they call it something different? | 09 June 2017, 21:26:36 UTC |
| a7887ef | Fergus Cooper | 09 June 2017, 18:11:32 UTC | Fix previous commit undefined-var-template is new after version 3.8, so only turn it off then | 09 June 2017, 18:11:32 UTC |
| e7da01c | Fergus Cooper | 09 June 2017, 17:45:35 UTC | Turn off undefined-var-template warnings for Clang compilers False positives in Chaste for clang++-3.9 and up | 09 June 2017, 17:46:03 UTC |
| 58cb292 | Fergus Cooper | 06 June 2017, 21:13:15 UTC | Boring commit, to force waterfall | 06 June 2017, 21:13:15 UTC |
| 4b84867 | Joe Pitt-Francis | 06 June 2017, 14:39:12 UTC | #2911 Fix SCons for later Ubuntu versions | 06 June 2017, 14:39:12 UTC |
| abf7d94 | Joe Pitt-Francis | 06 June 2017, 14:27:27 UTC | #2911 Fix functionality broken by PETSc 3.7.3 | 06 June 2017, 14:27:27 UTC |
| e1d6273 | Joe Pitt-Francis | 06 June 2017, 08:48:05 UTC | Give output folders for performance test unique names to avoid conflicts when run simultaneously | 06 June 2017, 08:48:05 UTC |
