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https://github.com/ENCODE-DCC/encoded
19 July 2024, 21:15:45 UTC
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Revision Author Date Message Commit Date
3da66af nikhilrp 08 June 2015, 20:52:03 UTC Merge remote-tracking branch 'origin/master' into 2479_search 08 June 2015, 20:52:03 UTC
6083e6e Laurence Rowe 08 June 2015, 18:41:52 UTC Merge pull request #813 from ENCODE-DCC/2975-pipeline-search 2975 & 2692 Pipeline UI updates 08 June 2015, 18:41:52 UTC
0da8d2c Forrest Tanaka 05 June 2015, 15:47:45 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 05 June 2015, 15:47:45 UTC
6fac09b Laurence Rowe 04 June 2015, 22:04:22 UTC Merge pull request #812 from ENCODE-DCC/1151-expand_flowcell_details Add types needed for ChIA-PET and RAMPAGE pipelines and properties fo… 04 June 2015, 22:04:22 UTC
f56040e Laurence Rowe 04 June 2015, 22:02:49 UTC Merge pull request #811 from ENCODE-DCC/2912-font-size-rem 2912 Use rem units for CSS font sizing 04 June 2015, 22:02:49 UTC
b774ac2 Forrest Tanaka 04 June 2015, 16:52:30 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 04 June 2015, 16:52:30 UTC
04ebd2a Forrest Tanaka 04 June 2015, 15:19:25 UTC Merge remote-tracking branch 'origin/master' into 2912-font-size-rem 04 June 2015, 15:19:25 UTC
481663f Laurence Rowe 03 June 2015, 23:45:35 UTC Merge pull request #810 from ENCODE-DCC/separate-datafixtures Separate datafixtures 03 June 2015, 23:45:35 UTC
f6a44da Laurence Rowe 03 June 2015, 23:45:06 UTC Merge pull request #809 from ENCODE-DCC/2967_fix Made changes to batch download to embed 'files.replicate.library.bios… 03 June 2015, 23:45:06 UTC
fd3576e nikhilrp 03 June 2015, 23:05:09 UTC Made changes to batch download to embed 'files.replicate.library.biosample' rather than making a separate call 03 June 2015, 23:05:09 UTC
efce542 Laurence Rowe 03 June 2015, 22:50:53 UTC Depend on encoded.tests.layers fixture from pytest_plugins. 03 June 2015, 22:50:53 UTC
b95c163 Laurence Rowe 03 June 2015, 22:50:04 UTC Separate data fixtures into their own file. 03 June 2015, 22:50:04 UTC
3e60eb8 Laurence Rowe 03 June 2015, 22:29:49 UTC Merge pull request #808 from ENCODE-DCC/v26-hotfix V26 hotfix 03 June 2015, 22:29:49 UTC
9ec9577 Forrest Tanaka 03 June 2015, 21:00:30 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 03 June 2015, 21:00:30 UTC
1e18c8b Forrest Tanaka 03 June 2015, 20:46:35 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 03 June 2015, 20:46:35 UTC
19b82b0 Forrest Tanaka 03 June 2015, 20:46:26 UTC Change pipeline titles and pipeline graph display Changed pipeline metadata titles from Input File Type to just Input, and same for Output File Type. By default, pipeline graphs show no metadata panels at all, and clicking one displays the corresponding metadata, just like with the experiment file graphs. Before, all step metadata was displayed. 03 June 2015, 20:46:26 UTC
96ff55a Laurence Rowe 03 June 2015, 20:45:07 UTC Merge pull request #805 from ENCODE-DCC/2973-new_file_format_types Add new file formats and update file checks 03 June 2015, 20:45:07 UTC
9a8a222 Laurence Rowe 03 June 2015, 20:38:44 UTC Merge pull request #807 from ENCODE-DCC/2906-pi 2906 Display PI on experiment and biosample pages. 03 June 2015, 20:38:44 UTC
4f8b043 Forrest Tanaka 03 June 2015, 20:04:41 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 03 June 2015, 20:04:41 UTC
15ffdae Forrest Tanaka 03 June 2015, 19:13:43 UTC Remove “Grant” from biosample pages 03 June 2015, 19:13:43 UTC
5922265 Laurence Rowe 03 June 2015, 19:10:48 UTC Merge pull request #806 from ENCODE-DCC/hot_fix switched "\r\n" to just "\n" 03 June 2015, 19:10:48 UTC
d729807 Forrest Tanaka 03 June 2015, 18:59:52 UTC Use pi.lab on biosamples 03 June 2015, 18:59:52 UTC
79e384f Forrest Tanaka 03 June 2015, 18:32:22 UTC Merge remote-tracking branch 'origin/master' into 2912-font-size-rem 03 June 2015, 18:32:22 UTC
f017cf0 Forrest Tanaka 03 June 2015, 18:17:51 UTC Merge remote-tracking branch 'origin/master' into 2906-pi 03 June 2015, 18:17:51 UTC
0f9d94d estherc 03 June 2015, 18:07:00 UTC Add types needed for ChIA-PET and RAMPAGE pipelines and properties for barcodes 03 June 2015, 18:07:00 UTC
97302f3 nikhilrp 03 June 2015, 17:58:52 UTC switched "\r\n" to just "\n" 03 June 2015, 17:58:52 UTC
65e162a estherc 03 June 2015, 16:56:25 UTC Add new file formats and update file checks 03 June 2015, 16:56:25 UTC
15c78d6 Laurence Rowe 03 June 2015, 05:20:22 UTC Merge pull request #803 from ENCODE-DCC/refactor-dbsession-usage Refactor dbsession usage 03 June 2015, 05:20:22 UTC
d11e97d Laurence Rowe 03 June 2015, 03:10:00 UTC Remove download of backfill data for ticket 2683 now all is upgraded. 03 June 2015, 03:10:00 UTC
f16afca Laurence Rowe 03 June 2015, 03:02:33 UTC Place DBSession on the registry instead of a module global for easier testing. 03 June 2015, 03:02:33 UTC
39be402 Laurence Rowe 03 June 2015, 00:06:28 UTC Access DBSession through the storage tool. 03 June 2015, 00:06:28 UTC
91c9b4a Laurence Rowe 02 June 2015, 22:20:34 UTC Simplify attachment code. 02 June 2015, 22:20:34 UTC
0c9b918 Laurence Rowe 02 June 2015, 22:13:33 UTC BlobStorage tool. 02 June 2015, 22:13:33 UTC
2603811 Laurence Rowe 02 June 2015, 20:24:51 UTC Minimal nginx proxy for development when file downloads needed. 02 June 2015, 20:24:51 UTC
40a1a69 Laurence Rowe 02 June 2015, 19:52:38 UTC Merge pull request #801 from ENCODE-DCC/2889-viewing-groups2 2889 viewing groups2 02 June 2015, 19:52:38 UTC
9e1cde8 Laurence Rowe 01 June 2015, 23:07:02 UTC Merge pull request #802 from ENCODE-DCC/2971-abstract-reverse-links 2971 abstract reverse links 01 June 2015, 23:07:02 UTC
ca50c17 Laurence Rowe 01 June 2015, 22:38:03 UTC Test to show step_run.qc_metrics reverse link property now works. 01 June 2015, 22:38:03 UTC
fc922c7 Laurence Rowe 01 June 2015, 22:30:33 UTC pipeline object fixtures 01 June 2015, 22:37:36 UTC
5ff7fee Laurence Rowe 01 June 2015, 21:51:28 UTC Allow rev links to abstract types. 01 June 2015, 21:51:28 UTC
167683b Forrest Tanaka 01 June 2015, 16:34:16 UTC Merge remote-tracking branch 'origin/master' into 2912-font-size-rem 01 June 2015, 16:34:16 UTC
15548b6 Forrest Tanaka 01 June 2015, 16:05:36 UTC Merge remote-tracking branch 'origin/master' into 2906-pi 01 June 2015, 16:05:36 UTC
d146510 Forrest Tanaka 01 June 2015, 15:08:04 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 01 June 2015, 15:08:04 UTC
688a8f5 Laurence Rowe 31 May 2015, 18:34:46 UTC Merge remote-tracking branch 'origin/master' into 2889-viewing-groups2 31 May 2015, 18:34:46 UTC
d605196 Laurence Rowe 31 May 2015, 18:33:36 UTC Merge pull request #800 from ENCODE-DCC/preview-maybe-from-db #2989 We need to be able to preview objects which are not yet in elasticsea… 31 May 2015, 18:33:36 UTC
408e897 Laurence Rowe 31 May 2015, 01:39:23 UTC Fix Python2 compatibility. 31 May 2015, 01:39:23 UTC
339c545 Laurence Rowe 30 May 2015, 23:38:09 UTC Except for shared objects, restrict access to viewing_group for 'in progress' items. 31 May 2015, 01:16:35 UTC
dfd8e9f Laurence Rowe 29 May 2015, 22:17:16 UTC Use lab/award from parent software object for access control. 30 May 2015, 23:33:12 UTC
8d999cf Laurence Rowe 30 May 2015, 23:29:21 UTC Add viewing_group to awards test data. 30 May 2015, 23:32:49 UTC
1465924 Laurence Rowe 30 May 2015, 23:31:45 UTC Use functools.lru_cache() instead of our memoize decorator. 30 May 2015, 23:31:45 UTC
76e9b5d Laurence Rowe 30 May 2015, 23:31:11 UTC Remove attribution from platform as it is not required and no objects are attributed to award/lab. 30 May 2015, 23:31:11 UTC
a7b6499 Laurence Rowe 30 May 2015, 23:25:36 UTC Refactor test sample data into fixtures. 30 May 2015, 23:25:36 UTC
00b524b Laurence Rowe 30 May 2015, 01:05:42 UTC Reduce number of awards in test set. 30 May 2015, 21:51:52 UTC
b30e1b4 Laurence Rowe 21 May 2015, 01:51:18 UTC We need to be able to preview objects which are not yet in elasticsearch. Not working yet as listing item components require columns property. 29 May 2015, 23:54:46 UTC
d6812fe Laurence Rowe 29 May 2015, 23:33:54 UTC Merge pull request #799 from ENCODE-DCC/2990-search-titles 2990 Hard code titles in search result pages 29 May 2015, 23:33:54 UTC
b7f4247 Forrest Tanaka 29 May 2015, 20:55:38 UTC Merge remote-tracking branch 'origin/master' into 2990-search-titles 29 May 2015, 20:55:38 UTC
d0335a7 Forrest Tanaka 29 May 2015, 19:36:26 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 29 May 2015, 19:36:26 UTC
fb8cd1a Forrest Tanaka 29 May 2015, 19:36:03 UTC Finish up demo pipeline search page Ready for evaluation. 29 May 2015, 19:36:03 UTC
dc487ab Laurence Rowe 29 May 2015, 18:45:48 UTC Merge pull request #798 from ENCODE-DCC/no-double-png Don’t double graph PNG sizes 29 May 2015, 18:45:48 UTC
3dcb096 Forrest Tanaka 29 May 2015, 17:38:53 UTC Fix up pipeline page; add pipeline menu 29 May 2015, 17:38:53 UTC
3f6e3a5 Forrest Tanaka 29 May 2015, 17:06:11 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 29 May 2015, 17:06:11 UTC
25769e9 Forrest Tanaka 29 May 2015, 16:44:06 UTC Hard-code search listing titles Titles of metadata on each search listing was done through this.props.columns. Now they’re all hard-coded. 29 May 2015, 16:44:06 UTC
1d4bf17 Forrest Tanaka 29 May 2015, 14:48:58 UTC Merge remote-tracking branch 'origin/master' into no-double-png 29 May 2015, 14:48:58 UTC
0b3ad71 Forrest Tanaka 29 May 2015, 14:48:35 UTC First pass at a pipeline search page. 29 May 2015, 14:48:35 UTC
51d3ae8 Laurence Rowe 29 May 2015, 01:37:03 UTC Merge pull request #795 from ENCODE-DCC/2967_batch_download 2967 batch download 29 May 2015, 01:37:03 UTC
e9e67c2 Laurence Rowe 29 May 2015, 01:36:23 UTC Merge pull request #796 from ENCODE-DCC/2965-graph-dl 2965 Allow graph downloading in Safari and Firefox 29 May 2015, 01:36:23 UTC
ca996a4 Laurence Rowe 29 May 2015, 01:35:31 UTC Merge pull request #797 from ENCODE-DCC/2988-delete-access-key 2988 delete access key 29 May 2015, 01:35:31 UTC
0be3532 Laurence Rowe 29 May 2015, 00:40:03 UTC Disallow login of deleted access keys. 29 May 2015, 00:40:03 UTC
38c2d8f Laurence Rowe 29 May 2015, 00:30:49 UTC The userid principal is also added by the general groupfinder. 29 May 2015, 00:30:49 UTC
3321593 Forrest Tanaka 28 May 2015, 22:42:15 UTC Merge remote-tracking branch 'origin/master' into 2975-pipeline-search 28 May 2015, 22:42:15 UTC
7e1d4d5 Laurence Rowe 28 May 2015, 22:12:30 UTC Allow persona to login to *.instance.encodedcc.org. 28 May 2015, 22:12:30 UTC
cdad7f7 Forrest Tanaka 28 May 2015, 22:11:56 UTC Stop doubling the size of downloaded graphs May be causing a browser memory problem, with really big graphs. 28 May 2015, 22:11:56 UTC
8911823 Laurence Rowe 28 May 2015, 22:03:25 UTC Update deploy script messages with https url and new ssh domain. 28 May 2015, 22:03:25 UTC
e5ac0da Laurence Rowe 28 May 2015, 21:57:39 UTC Switch to *.instance.encodedcc.org as *.demo.encodedcc.org will be SSL proxy. 28 May 2015, 21:57:39 UTC
a77ffa9 Forrest Tanaka 28 May 2015, 17:13:01 UTC Display award pi lab title Was displaying PI title, but now showing PI lab title so that we get the institution as well. 28 May 2015, 17:13:01 UTC
eec3602 Forrest Tanaka 28 May 2015, 16:39:01 UTC Harden software query string processing Guard against having no href property, such as with a Jest test that began failing because of this. 28 May 2015, 16:39:01 UTC
0d2cc16 Forrest Tanaka 28 May 2015, 15:59:08 UTC QA display and software version updates Display QA statis generated as a vertical list instead of a horizontal one on pipeline pages. When clicking a software version on a pipeline page, the target software page now displays the corresponding version through the query string. 28 May 2015, 15:59:08 UTC
d6e41d4 Forrest Tanaka 27 May 2015, 22:57:58 UTC Redo how selected pipeline steps are displayed Display metadata on all steps in a pipeline if no steps are selected in the graph. If a step is selected, then display the metadata only for that step. 27 May 2015, 22:57:58 UTC
279ba6b Forrest Tanaka 27 May 2015, 22:22:39 UTC Change a couple pipeline labels From Input and Output file formats to file types. 27 May 2015, 22:22:39 UTC
3768aff Forrest Tanaka 27 May 2015, 20:39:28 UTC Reduce search accession font size 27 May 2015, 20:39:28 UTC
09b7d59 Forrest Tanaka 27 May 2015, 19:42:20 UTC Merge branch '2912-font-size-rem' of https://github.com/ENCODE-DCC/encoded into 2912-font-size-rem 27 May 2015, 19:42:20 UTC
a6bfabb Forrest Tanaka 27 May 2015, 19:42:08 UTC Merge remote-tracking branch 'origin/master' into 2912-font-size-rem # Conflicts: # src/encoded/static/scss/encoded/modules/_pipeline.scss 27 May 2015, 19:42:08 UTC
fe51bc1 Forrest Tanaka 27 May 2015, 19:28:32 UTC Resurrect old 2692 changes Applied old 2692 changes to a new branch off master because an attempt to merge master to the older 2692-pipeline-graph branch caused too many conflicts. 27 May 2015, 19:28:32 UTC
a1396b0 Forrest Tanaka 27 May 2015, 15:38:09 UTC Merge remote-tracking branch 'origin/master' into 2906-pi 27 May 2015, 15:38:09 UTC
b1f3806 Forrest Tanaka 27 May 2015, 14:59:33 UTC Merge remote-tracking branch 'origin/master' into 2965-graph-dl 27 May 2015, 14:59:33 UTC
8040d1a nikhilrp 27 May 2015, 09:43:18 UTC Changed mapping for numbers and dates 27 May 2015, 09:43:18 UTC
a46b3e7 nikhilrp 27 May 2015, 08:38:33 UTC Added default operator 27 May 2015, 08:38:33 UTC
f082f8d nikhilrp 27 May 2015, 08:36:50 UTC first version of expressive searching 27 May 2015, 08:36:50 UTC
7ea4099 nikhilrp 27 May 2015, 05:32:57 UTC Merge remote-tracking branch 'origin/master' into 2967_batch_download 27 May 2015, 05:32:57 UTC
a32afa3 Laurence Rowe 26 May 2015, 22:23:30 UTC Merge pull request #794 from ENCODE-DCC/use-standard-pool Use standard pool 26 May 2015, 22:23:30 UTC
9069524 nikhilrp 26 May 2015, 22:06:31 UTC Added few more columns 26 May 2015, 22:06:31 UTC
c1eb030 Forrest Tanaka 26 May 2015, 20:53:44 UTC Merge remote-tracking branch 'origin/master' into 2965-graph-dl 26 May 2015, 20:53:44 UTC
0d26172 Forrest Tanaka 26 May 2015, 20:08:06 UTC Merge remote-tracking branch 'origin/master' into 2912-font-size-rem 26 May 2015, 20:08:06 UTC
a5772f1 Forrest Tanaka 26 May 2015, 20:07:56 UTC Merge remote-tracking branch 'origin/master' into 2912-font-size-rem # Conflicts: # src/encoded/static/scss/encoded/modules/_pipeline.scss 26 May 2015, 20:07:56 UTC
839b32b Laurence Rowe 26 May 2015, 18:26:46 UTC Merge pull request #793 from ENCODE-DCC/revoked_fix revoked experiment check 26 May 2015, 18:26:46 UTC
7175329 nikhilrp 26 May 2015, 18:19:39 UTC revoked experiment check 26 May 2015, 18:19:39 UTC
82f97ec Forrest Tanaka 26 May 2015, 17:04:38 UTC Merge remote-tracking branch 'origin/master' into 2906-pi 26 May 2015, 17:04:38 UTC
66230e9 Laurence Rowe 23 May 2015, 23:50:36 UTC Increase pool chunksize to improve performance. chunksize=1: 48m chunksize=8: 38m chunksize=32: 34m (old EventPool: 53m) 23 May 2015, 23:50:36 UTC
b4d299c Laurence Rowe 23 May 2015, 02:07:33 UTC Use standard multiprocessing pool. 23 May 2015, 02:07:33 UTC
2465f40 Laurence Rowe 23 May 2015, 02:06:29 UTC Set postgres application_name for better pg_stat_activity debugging. 23 May 2015, 02:06:29 UTC
2e7be02 Forrest Tanaka 22 May 2015, 21:13:19 UTC Merge remote-tracking branch 'origin/master' into 2965-graph-dl 22 May 2015, 21:13:19 UTC
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