https://github.com/ENCODE-DCC/encoded
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- refs/remotes/origin/4408-biosample-submitter
- refs/remotes/origin/4413-exempt-images
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- refs/remotes/origin/4422-type-error-fix-commit
- refs/remotes/origin/4423-audit-pipelines
- refs/remotes/origin/4424-ontology-update-jason
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- Branches list truncated to 1000 entries, 441 were omitted.
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Revision | Author | Date | Message | Commit Date |
---|---|---|---|---|
3da66af | nikhilrp | 08 June 2015, 20:52:03 UTC | Merge remote-tracking branch 'origin/master' into 2479_search | 08 June 2015, 20:52:03 UTC |
6083e6e | Laurence Rowe | 08 June 2015, 18:41:52 UTC | Merge pull request #813 from ENCODE-DCC/2975-pipeline-search 2975 & 2692 Pipeline UI updates | 08 June 2015, 18:41:52 UTC |
0da8d2c | Forrest Tanaka | 05 June 2015, 15:47:45 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 05 June 2015, 15:47:45 UTC |
6fac09b | Laurence Rowe | 04 June 2015, 22:04:22 UTC | Merge pull request #812 from ENCODE-DCC/1151-expand_flowcell_details Add types needed for ChIA-PET and RAMPAGE pipelines and properties fo… | 04 June 2015, 22:04:22 UTC |
f56040e | Laurence Rowe | 04 June 2015, 22:02:49 UTC | Merge pull request #811 from ENCODE-DCC/2912-font-size-rem 2912 Use rem units for CSS font sizing | 04 June 2015, 22:02:49 UTC |
b774ac2 | Forrest Tanaka | 04 June 2015, 16:52:30 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 04 June 2015, 16:52:30 UTC |
04ebd2a | Forrest Tanaka | 04 June 2015, 15:19:25 UTC | Merge remote-tracking branch 'origin/master' into 2912-font-size-rem | 04 June 2015, 15:19:25 UTC |
481663f | Laurence Rowe | 03 June 2015, 23:45:35 UTC | Merge pull request #810 from ENCODE-DCC/separate-datafixtures Separate datafixtures | 03 June 2015, 23:45:35 UTC |
f6a44da | Laurence Rowe | 03 June 2015, 23:45:06 UTC | Merge pull request #809 from ENCODE-DCC/2967_fix Made changes to batch download to embed 'files.replicate.library.bios… | 03 June 2015, 23:45:06 UTC |
fd3576e | nikhilrp | 03 June 2015, 23:05:09 UTC | Made changes to batch download to embed 'files.replicate.library.biosample' rather than making a separate call | 03 June 2015, 23:05:09 UTC |
efce542 | Laurence Rowe | 03 June 2015, 22:50:53 UTC | Depend on encoded.tests.layers fixture from pytest_plugins. | 03 June 2015, 22:50:53 UTC |
b95c163 | Laurence Rowe | 03 June 2015, 22:50:04 UTC | Separate data fixtures into their own file. | 03 June 2015, 22:50:04 UTC |
3e60eb8 | Laurence Rowe | 03 June 2015, 22:29:49 UTC | Merge pull request #808 from ENCODE-DCC/v26-hotfix V26 hotfix | 03 June 2015, 22:29:49 UTC |
9ec9577 | Forrest Tanaka | 03 June 2015, 21:00:30 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 03 June 2015, 21:00:30 UTC |
1e18c8b | Forrest Tanaka | 03 June 2015, 20:46:35 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 03 June 2015, 20:46:35 UTC |
19b82b0 | Forrest Tanaka | 03 June 2015, 20:46:26 UTC | Change pipeline titles and pipeline graph display Changed pipeline metadata titles from Input File Type to just Input, and same for Output File Type. By default, pipeline graphs show no metadata panels at all, and clicking one displays the corresponding metadata, just like with the experiment file graphs. Before, all step metadata was displayed. | 03 June 2015, 20:46:26 UTC |
96ff55a | Laurence Rowe | 03 June 2015, 20:45:07 UTC | Merge pull request #805 from ENCODE-DCC/2973-new_file_format_types Add new file formats and update file checks | 03 June 2015, 20:45:07 UTC |
9a8a222 | Laurence Rowe | 03 June 2015, 20:38:44 UTC | Merge pull request #807 from ENCODE-DCC/2906-pi 2906 Display PI on experiment and biosample pages. | 03 June 2015, 20:38:44 UTC |
4f8b043 | Forrest Tanaka | 03 June 2015, 20:04:41 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 03 June 2015, 20:04:41 UTC |
15ffdae | Forrest Tanaka | 03 June 2015, 19:13:43 UTC | Remove “Grant” from biosample pages | 03 June 2015, 19:13:43 UTC |
5922265 | Laurence Rowe | 03 June 2015, 19:10:48 UTC | Merge pull request #806 from ENCODE-DCC/hot_fix switched "\r\n" to just "\n" | 03 June 2015, 19:10:48 UTC |
d729807 | Forrest Tanaka | 03 June 2015, 18:59:52 UTC | Use pi.lab on biosamples | 03 June 2015, 18:59:52 UTC |
79e384f | Forrest Tanaka | 03 June 2015, 18:32:22 UTC | Merge remote-tracking branch 'origin/master' into 2912-font-size-rem | 03 June 2015, 18:32:22 UTC |
f017cf0 | Forrest Tanaka | 03 June 2015, 18:17:51 UTC | Merge remote-tracking branch 'origin/master' into 2906-pi | 03 June 2015, 18:17:51 UTC |
0f9d94d | estherc | 03 June 2015, 18:07:00 UTC | Add types needed for ChIA-PET and RAMPAGE pipelines and properties for barcodes | 03 June 2015, 18:07:00 UTC |
97302f3 | nikhilrp | 03 June 2015, 17:58:52 UTC | switched "\r\n" to just "\n" | 03 June 2015, 17:58:52 UTC |
65e162a | estherc | 03 June 2015, 16:56:25 UTC | Add new file formats and update file checks | 03 June 2015, 16:56:25 UTC |
15c78d6 | Laurence Rowe | 03 June 2015, 05:20:22 UTC | Merge pull request #803 from ENCODE-DCC/refactor-dbsession-usage Refactor dbsession usage | 03 June 2015, 05:20:22 UTC |
d11e97d | Laurence Rowe | 03 June 2015, 03:10:00 UTC | Remove download of backfill data for ticket 2683 now all is upgraded. | 03 June 2015, 03:10:00 UTC |
f16afca | Laurence Rowe | 03 June 2015, 03:02:33 UTC | Place DBSession on the registry instead of a module global for easier testing. | 03 June 2015, 03:02:33 UTC |
39be402 | Laurence Rowe | 03 June 2015, 00:06:28 UTC | Access DBSession through the storage tool. | 03 June 2015, 00:06:28 UTC |
91c9b4a | Laurence Rowe | 02 June 2015, 22:20:34 UTC | Simplify attachment code. | 02 June 2015, 22:20:34 UTC |
0c9b918 | Laurence Rowe | 02 June 2015, 22:13:33 UTC | BlobStorage tool. | 02 June 2015, 22:13:33 UTC |
2603811 | Laurence Rowe | 02 June 2015, 20:24:51 UTC | Minimal nginx proxy for development when file downloads needed. | 02 June 2015, 20:24:51 UTC |
40a1a69 | Laurence Rowe | 02 June 2015, 19:52:38 UTC | Merge pull request #801 from ENCODE-DCC/2889-viewing-groups2 2889 viewing groups2 | 02 June 2015, 19:52:38 UTC |
9e1cde8 | Laurence Rowe | 01 June 2015, 23:07:02 UTC | Merge pull request #802 from ENCODE-DCC/2971-abstract-reverse-links 2971 abstract reverse links | 01 June 2015, 23:07:02 UTC |
ca50c17 | Laurence Rowe | 01 June 2015, 22:38:03 UTC | Test to show step_run.qc_metrics reverse link property now works. | 01 June 2015, 22:38:03 UTC |
fc922c7 | Laurence Rowe | 01 June 2015, 22:30:33 UTC | pipeline object fixtures | 01 June 2015, 22:37:36 UTC |
5ff7fee | Laurence Rowe | 01 June 2015, 21:51:28 UTC | Allow rev links to abstract types. | 01 June 2015, 21:51:28 UTC |
167683b | Forrest Tanaka | 01 June 2015, 16:34:16 UTC | Merge remote-tracking branch 'origin/master' into 2912-font-size-rem | 01 June 2015, 16:34:16 UTC |
15548b6 | Forrest Tanaka | 01 June 2015, 16:05:36 UTC | Merge remote-tracking branch 'origin/master' into 2906-pi | 01 June 2015, 16:05:36 UTC |
d146510 | Forrest Tanaka | 01 June 2015, 15:08:04 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 01 June 2015, 15:08:04 UTC |
688a8f5 | Laurence Rowe | 31 May 2015, 18:34:46 UTC | Merge remote-tracking branch 'origin/master' into 2889-viewing-groups2 | 31 May 2015, 18:34:46 UTC |
d605196 | Laurence Rowe | 31 May 2015, 18:33:36 UTC | Merge pull request #800 from ENCODE-DCC/preview-maybe-from-db #2989 We need to be able to preview objects which are not yet in elasticsea… | 31 May 2015, 18:33:36 UTC |
408e897 | Laurence Rowe | 31 May 2015, 01:39:23 UTC | Fix Python2 compatibility. | 31 May 2015, 01:39:23 UTC |
339c545 | Laurence Rowe | 30 May 2015, 23:38:09 UTC | Except for shared objects, restrict access to viewing_group for 'in progress' items. | 31 May 2015, 01:16:35 UTC |
dfd8e9f | Laurence Rowe | 29 May 2015, 22:17:16 UTC | Use lab/award from parent software object for access control. | 30 May 2015, 23:33:12 UTC |
8d999cf | Laurence Rowe | 30 May 2015, 23:29:21 UTC | Add viewing_group to awards test data. | 30 May 2015, 23:32:49 UTC |
1465924 | Laurence Rowe | 30 May 2015, 23:31:45 UTC | Use functools.lru_cache() instead of our memoize decorator. | 30 May 2015, 23:31:45 UTC |
76e9b5d | Laurence Rowe | 30 May 2015, 23:31:11 UTC | Remove attribution from platform as it is not required and no objects are attributed to award/lab. | 30 May 2015, 23:31:11 UTC |
a7b6499 | Laurence Rowe | 30 May 2015, 23:25:36 UTC | Refactor test sample data into fixtures. | 30 May 2015, 23:25:36 UTC |
00b524b | Laurence Rowe | 30 May 2015, 01:05:42 UTC | Reduce number of awards in test set. | 30 May 2015, 21:51:52 UTC |
b30e1b4 | Laurence Rowe | 21 May 2015, 01:51:18 UTC | We need to be able to preview objects which are not yet in elasticsearch. Not working yet as listing item components require columns property. | 29 May 2015, 23:54:46 UTC |
d6812fe | Laurence Rowe | 29 May 2015, 23:33:54 UTC | Merge pull request #799 from ENCODE-DCC/2990-search-titles 2990 Hard code titles in search result pages | 29 May 2015, 23:33:54 UTC |
b7f4247 | Forrest Tanaka | 29 May 2015, 20:55:38 UTC | Merge remote-tracking branch 'origin/master' into 2990-search-titles | 29 May 2015, 20:55:38 UTC |
d0335a7 | Forrest Tanaka | 29 May 2015, 19:36:26 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 29 May 2015, 19:36:26 UTC |
fb8cd1a | Forrest Tanaka | 29 May 2015, 19:36:03 UTC | Finish up demo pipeline search page Ready for evaluation. | 29 May 2015, 19:36:03 UTC |
dc487ab | Laurence Rowe | 29 May 2015, 18:45:48 UTC | Merge pull request #798 from ENCODE-DCC/no-double-png Don’t double graph PNG sizes | 29 May 2015, 18:45:48 UTC |
3dcb096 | Forrest Tanaka | 29 May 2015, 17:38:53 UTC | Fix up pipeline page; add pipeline menu | 29 May 2015, 17:38:53 UTC |
3f6e3a5 | Forrest Tanaka | 29 May 2015, 17:06:11 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 29 May 2015, 17:06:11 UTC |
25769e9 | Forrest Tanaka | 29 May 2015, 16:44:06 UTC | Hard-code search listing titles Titles of metadata on each search listing was done through this.props.columns. Now they’re all hard-coded. | 29 May 2015, 16:44:06 UTC |
1d4bf17 | Forrest Tanaka | 29 May 2015, 14:48:58 UTC | Merge remote-tracking branch 'origin/master' into no-double-png | 29 May 2015, 14:48:58 UTC |
0b3ad71 | Forrest Tanaka | 29 May 2015, 14:48:35 UTC | First pass at a pipeline search page. | 29 May 2015, 14:48:35 UTC |
51d3ae8 | Laurence Rowe | 29 May 2015, 01:37:03 UTC | Merge pull request #795 from ENCODE-DCC/2967_batch_download 2967 batch download | 29 May 2015, 01:37:03 UTC |
e9e67c2 | Laurence Rowe | 29 May 2015, 01:36:23 UTC | Merge pull request #796 from ENCODE-DCC/2965-graph-dl 2965 Allow graph downloading in Safari and Firefox | 29 May 2015, 01:36:23 UTC |
ca996a4 | Laurence Rowe | 29 May 2015, 01:35:31 UTC | Merge pull request #797 from ENCODE-DCC/2988-delete-access-key 2988 delete access key | 29 May 2015, 01:35:31 UTC |
0be3532 | Laurence Rowe | 29 May 2015, 00:40:03 UTC | Disallow login of deleted access keys. | 29 May 2015, 00:40:03 UTC |
38c2d8f | Laurence Rowe | 29 May 2015, 00:30:49 UTC | The userid principal is also added by the general groupfinder. | 29 May 2015, 00:30:49 UTC |
3321593 | Forrest Tanaka | 28 May 2015, 22:42:15 UTC | Merge remote-tracking branch 'origin/master' into 2975-pipeline-search | 28 May 2015, 22:42:15 UTC |
7e1d4d5 | Laurence Rowe | 28 May 2015, 22:12:30 UTC | Allow persona to login to *.instance.encodedcc.org. | 28 May 2015, 22:12:30 UTC |
cdad7f7 | Forrest Tanaka | 28 May 2015, 22:11:56 UTC | Stop doubling the size of downloaded graphs May be causing a browser memory problem, with really big graphs. | 28 May 2015, 22:11:56 UTC |
8911823 | Laurence Rowe | 28 May 2015, 22:03:25 UTC | Update deploy script messages with https url and new ssh domain. | 28 May 2015, 22:03:25 UTC |
e5ac0da | Laurence Rowe | 28 May 2015, 21:57:39 UTC | Switch to *.instance.encodedcc.org as *.demo.encodedcc.org will be SSL proxy. | 28 May 2015, 21:57:39 UTC |
a77ffa9 | Forrest Tanaka | 28 May 2015, 17:13:01 UTC | Display award pi lab title Was displaying PI title, but now showing PI lab title so that we get the institution as well. | 28 May 2015, 17:13:01 UTC |
eec3602 | Forrest Tanaka | 28 May 2015, 16:39:01 UTC | Harden software query string processing Guard against having no href property, such as with a Jest test that began failing because of this. | 28 May 2015, 16:39:01 UTC |
0d2cc16 | Forrest Tanaka | 28 May 2015, 15:59:08 UTC | QA display and software version updates Display QA statis generated as a vertical list instead of a horizontal one on pipeline pages. When clicking a software version on a pipeline page, the target software page now displays the corresponding version through the query string. | 28 May 2015, 15:59:08 UTC |
d6e41d4 | Forrest Tanaka | 27 May 2015, 22:57:58 UTC | Redo how selected pipeline steps are displayed Display metadata on all steps in a pipeline if no steps are selected in the graph. If a step is selected, then display the metadata only for that step. | 27 May 2015, 22:57:58 UTC |
279ba6b | Forrest Tanaka | 27 May 2015, 22:22:39 UTC | Change a couple pipeline labels From Input and Output file formats to file types. | 27 May 2015, 22:22:39 UTC |
3768aff | Forrest Tanaka | 27 May 2015, 20:39:28 UTC | Reduce search accession font size | 27 May 2015, 20:39:28 UTC |
09b7d59 | Forrest Tanaka | 27 May 2015, 19:42:20 UTC | Merge branch '2912-font-size-rem' of https://github.com/ENCODE-DCC/encoded into 2912-font-size-rem | 27 May 2015, 19:42:20 UTC |
a6bfabb | Forrest Tanaka | 27 May 2015, 19:42:08 UTC | Merge remote-tracking branch 'origin/master' into 2912-font-size-rem # Conflicts: # src/encoded/static/scss/encoded/modules/_pipeline.scss | 27 May 2015, 19:42:08 UTC |
fe51bc1 | Forrest Tanaka | 27 May 2015, 19:28:32 UTC | Resurrect old 2692 changes Applied old 2692 changes to a new branch off master because an attempt to merge master to the older 2692-pipeline-graph branch caused too many conflicts. | 27 May 2015, 19:28:32 UTC |
a1396b0 | Forrest Tanaka | 27 May 2015, 15:38:09 UTC | Merge remote-tracking branch 'origin/master' into 2906-pi | 27 May 2015, 15:38:09 UTC |
b1f3806 | Forrest Tanaka | 27 May 2015, 14:59:33 UTC | Merge remote-tracking branch 'origin/master' into 2965-graph-dl | 27 May 2015, 14:59:33 UTC |
8040d1a | nikhilrp | 27 May 2015, 09:43:18 UTC | Changed mapping for numbers and dates | 27 May 2015, 09:43:18 UTC |
a46b3e7 | nikhilrp | 27 May 2015, 08:38:33 UTC | Added default operator | 27 May 2015, 08:38:33 UTC |
f082f8d | nikhilrp | 27 May 2015, 08:36:50 UTC | first version of expressive searching | 27 May 2015, 08:36:50 UTC |
7ea4099 | nikhilrp | 27 May 2015, 05:32:57 UTC | Merge remote-tracking branch 'origin/master' into 2967_batch_download | 27 May 2015, 05:32:57 UTC |
a32afa3 | Laurence Rowe | 26 May 2015, 22:23:30 UTC | Merge pull request #794 from ENCODE-DCC/use-standard-pool Use standard pool | 26 May 2015, 22:23:30 UTC |
9069524 | nikhilrp | 26 May 2015, 22:06:31 UTC | Added few more columns | 26 May 2015, 22:06:31 UTC |
c1eb030 | Forrest Tanaka | 26 May 2015, 20:53:44 UTC | Merge remote-tracking branch 'origin/master' into 2965-graph-dl | 26 May 2015, 20:53:44 UTC |
0d26172 | Forrest Tanaka | 26 May 2015, 20:08:06 UTC | Merge remote-tracking branch 'origin/master' into 2912-font-size-rem | 26 May 2015, 20:08:06 UTC |
a5772f1 | Forrest Tanaka | 26 May 2015, 20:07:56 UTC | Merge remote-tracking branch 'origin/master' into 2912-font-size-rem # Conflicts: # src/encoded/static/scss/encoded/modules/_pipeline.scss | 26 May 2015, 20:07:56 UTC |
839b32b | Laurence Rowe | 26 May 2015, 18:26:46 UTC | Merge pull request #793 from ENCODE-DCC/revoked_fix revoked experiment check | 26 May 2015, 18:26:46 UTC |
7175329 | nikhilrp | 26 May 2015, 18:19:39 UTC | revoked experiment check | 26 May 2015, 18:19:39 UTC |
82f97ec | Forrest Tanaka | 26 May 2015, 17:04:38 UTC | Merge remote-tracking branch 'origin/master' into 2906-pi | 26 May 2015, 17:04:38 UTC |
66230e9 | Laurence Rowe | 23 May 2015, 23:50:36 UTC | Increase pool chunksize to improve performance. chunksize=1: 48m chunksize=8: 38m chunksize=32: 34m (old EventPool: 53m) | 23 May 2015, 23:50:36 UTC |
b4d299c | Laurence Rowe | 23 May 2015, 02:07:33 UTC | Use standard multiprocessing pool. | 23 May 2015, 02:07:33 UTC |
2465f40 | Laurence Rowe | 23 May 2015, 02:06:29 UTC | Set postgres application_name for better pg_stat_activity debugging. | 23 May 2015, 02:06:29 UTC |
2e7be02 | Forrest Tanaka | 22 May 2015, 21:13:19 UTC | Merge remote-tracking branch 'origin/master' into 2965-graph-dl | 22 May 2015, 21:13:19 UTC |