| 76e8345 | estherc | 04 November 2015, 18:19:41 UTC | Rename complete epigenome test data to reference epigenome | 04 November 2015, 18:19:41 UTC |
| 8678e84 | estherc | 03 November 2015, 22:58:19 UTC | Merge branch 'master' into 3141-datasets-fix | 03 November 2015, 22:58:19 UTC |
| b60a91a | Laurence Rowe | 03 November 2015, 22:46:43 UTC | Merge pull request #1004 from ENCODE-DCC/3334-modERN-pipeline-audit 3334 mod ern pipeline audit | 03 November 2015, 22:46:43 UTC |
| 6f8c4f0 | estherc | 03 November 2015, 22:41:46 UTC | Merged branch 'master' into 3334-modERN-pipeline-audit | 03 November 2015, 22:41:46 UTC |
| 84749b1 | Laurence Rowe | 03 November 2015, 02:11:57 UTC | Merge pull request #1003 from ENCODE-DCC/3401-elasticsearch-memory 3401 elasticsearch memory | 03 November 2015, 02:11:57 UTC |
| cffc18f | Laurence Rowe | 03 November 2015, 01:33:01 UTC | Increase batchupgrade batch-size default to 1000. | 03 November 2015, 01:33:01 UTC |
| 6dc66a5 | Laurence Rowe | 03 November 2015, 01:32:34 UTC | Need to use -i for batchupgrade. | 03 November 2015, 01:32:34 UTC |
| 81c8a54 | Laurence Rowe | 03 November 2015, 01:28:46 UTC | javascript-common is no longer installed but we do want to remove the security conf | 03 November 2015, 01:28:46 UTC |
| e133f5a | Laurence Rowe | 02 November 2015, 23:52:27 UTC | log slow elasticsearch queries. | 02 November 2015, 23:52:27 UTC |
| eeffe42 | Laurence Rowe | 02 November 2015, 23:42:26 UTC | bootcmd runs using dash not bash; show extended logging data. | 02 November 2015, 23:42:26 UTC |
| 776504f | estherc | 02 November 2015, 23:38:39 UTC | Add experiment6_7 upgrade and test | 02 November 2015, 23:38:39 UTC |
| ccf35c6 | Laurence Rowe | 02 November 2015, 23:05:16 UTC | Make elastichsearch heap size dependent on memory of instance. | 02 November 2015, 23:05:16 UTC |
| 9d8fd5d | estherc | 02 November 2015, 21:31:21 UTC | Remove FileSets and Series @collections | 02 November 2015, 21:31:21 UTC |
| 84ed86d | Laurence Rowe | 02 November 2015, 20:55:06 UTC | Merge pull request #1002 from ENCODE-DCC/3382-fasta-run-type Update file.py | 02 November 2015, 20:55:06 UTC |
| 51485c2 | estherc | 02 November 2015, 20:40:04 UTC | Fixed matched set test file | 02 November 2015, 20:40:04 UTC |
| 08ce189 | estherc | 30 October 2015, 23:59:14 UTC | Rename paired set as matched set | 02 November 2015, 20:16:24 UTC |
| 863c738 | estherc | 30 October 2015, 23:58:42 UTC | Rename paired set as matched set | 02 November 2015, 20:16:15 UTC |
| 0144b74 | estherc | 02 November 2015, 20:00:58 UTC | Change timeout back to 200 | 02 November 2015, 20:00:58 UTC |
| e995d52 | estherc | 02 November 2015, 20:00:15 UTC | Rename complete epigenome to reference epigenome | 02 November 2015, 20:00:15 UTC |
| 1367f2c | estherc | 30 October 2015, 22:42:37 UTC | Update class names to FileSet and CompleteEpigenome | 02 November 2015, 19:53:09 UTC |
| ea5d788 | estherc | 02 November 2015, 19:53:05 UTC | Remove related_datasets.files embedding for now | 02 November 2015, 19:53:05 UTC |
| da313f0 | estherc | 30 October 2015, 23:58:25 UTC | Add related_files to experiment as import_items | 02 November 2015, 19:42:18 UTC |
| ff287c9 | estherc | 02 November 2015, 19:41:44 UTC | Merge branch 'master' into 3141-bug-fix | 02 November 2015, 19:41:44 UTC |
| 95f040b | Laurence Rowe | 02 November 2015, 17:53:15 UTC | Merge pull request #1001 from ENCODE-DCC/2978-file-graph-fix 2978 filterOptions fix | 02 November 2015, 17:53:15 UTC |
| 799559c | Forrest Tanaka | 31 October 2015, 20:01:39 UTC | filterOptions fix Only reference filterOptions from jsonGraph when jsonGraph exists. | 31 October 2015, 20:01:39 UTC |
| b55431c | estherc | 31 October 2015, 00:27:55 UTC | Change modERN pipeline audits to yield | 31 October 2015, 00:27:55 UTC |
| 20b1aa2 | Laurence Rowe | 30 October 2015, 19:58:05 UTC | Avoid audit errors for validation errors in array properties. | 30 October 2015, 19:58:05 UTC |
| 9378faf | estherc | 30 October 2015, 19:45:08 UTC | Add full test data for organism development series | 30 October 2015, 19:45:08 UTC |
| 9868814 | estherc | 30 October 2015, 19:10:04 UTC | Increased timeout to 400 | 30 October 2015, 19:10:04 UTC |
| e6dd108 | estherc | 30 October 2015, 18:03:15 UTC | Update numbers in biosample and target features | 30 October 2015, 18:03:15 UTC |
| 9bcd353 | estherc | 30 October 2015, 15:31:34 UTC | Remove analysis_step_version embedding from series | 30 October 2015, 15:31:34 UTC |
| bd3c1f0 | estherc | 30 October 2015, 15:04:19 UTC | Remove analysis_step_version embedding from series | 30 October 2015, 15:04:19 UTC |
| a1af51b | estherc | 30 October 2015, 14:59:42 UTC | Remove analysis_step_version embedding from series | 30 October 2015, 14:59:42 UTC |
| cbd7189 | Laurence Rowe | 30 October 2015, 06:53:57 UTC | Merge pull request #999 from ENCODE-DCC/2978-graph-filter-3074-branch 2978 Experiment file graph filtering | 30 October 2015, 06:53:57 UTC |
| 2e30c1b | Forrest Tanaka | 29 October 2015, 23:02:17 UTC | Remove .cache Also added .cache directory to .gitignore | 29 October 2015, 23:02:17 UTC |
| 9967987 | Forrest Tanaka | 29 October 2015, 22:41:58 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 2978-graph-filter-3074-branch | 29 October 2015, 22:41:58 UTC |
| bcc38d6 | estherc | 29 October 2015, 22:38:27 UTC | Embed analysis_step_version for series | 29 October 2015, 22:38:27 UTC |
| 8b065d8 | Laurence Rowe | 29 October 2015, 22:17:55 UTC | Merge pull request #993 from ENCODE-DCC/3326-donor-documents 3326 donor documents | 29 October 2015, 22:17:55 UTC |
| edf501c | Laurence Rowe | 29 October 2015, 22:16:41 UTC | Merge pull request #992 from ENCODE-DCC/1415-references 1415 Links to references | 29 October 2015, 22:16:41 UTC |
| 954bacc | Laurence Rowe | 29 October 2015, 22:15:58 UTC | Merge pull request #1000 from ENCODE-DCC/3386-trackhub-status-error 3386 trackhub status error | 29 October 2015, 22:15:58 UTC |
| 1be38ad | estherc | 29 October 2015, 22:07:24 UTC | Add full experiment test data for paired sets | 29 October 2015, 22:07:24 UTC |
| 5231c8f | estherc | 29 October 2015, 20:43:30 UTC | Update load order | 29 October 2015, 20:43:30 UTC |
| 9778a34 | estherc | 29 October 2015, 20:43:10 UTC | Move month released to dataset class | 29 October 2015, 20:43:10 UTC |
| 6ed09ac | estherc | 29 October 2015, 20:42:45 UTC | Add more test data | 29 October 2015, 20:42:45 UTC |
| 6d48739 | estherc | 29 October 2015, 20:41:45 UTC | Consolidated facet/column/boost options across series and datasets | 29 October 2015, 20:41:45 UTC |
| 336b88a | estherc | 29 October 2015, 20:40:36 UTC | Add replication timing and complete epigenome series test data | 29 October 2015, 20:40:36 UTC |
| 06b88ed | estherc | 29 October 2015, 20:40:21 UTC | Add replication timing and complete epigenome series schema | 29 October 2015, 20:40:21 UTC |
| 92c7c03 | estherc | 29 October 2015, 20:38:00 UTC | Consolidated facet/column/boost options across analysis sets and datasets | 29 October 2015, 20:38:00 UTC |
| f829330 | estherc | 29 October 2015, 15:16:31 UTC | Move month released calc prop to dataset from expt | 29 October 2015, 15:16:31 UTC |
| edb9c73 | estherc | 29 October 2015, 07:20:52 UTC | Update load order | 29 October 2015, 07:20:52 UTC |
| 94d956f | estherc | 29 October 2015, 07:20:30 UTC | Add organism development series schema and data | 29 October 2015, 07:20:30 UTC |
| 2ea20ed | estherc | 29 October 2015, 07:19:31 UTC | Add treatment concentration series schema and data | 29 October 2015, 07:19:31 UTC |
| bb21012 | estherc | 29 October 2015, 06:02:26 UTC | Add assembly and revoked_datasets calc props for series | 29 October 2015, 06:02:26 UTC |
| b05d02d | estherc | 29 October 2015, 05:42:25 UTC | Update load order | 29 October 2015, 05:42:25 UTC |
| 0eb4d4f | estherc | 29 October 2015, 05:42:07 UTC | Move treatment classification to mixins | 29 October 2015, 05:42:07 UTC |
| c882bc8 | estherc | 29 October 2015, 05:41:14 UTC | Add treatment time series schema and test data | 29 October 2015, 05:41:14 UTC |
| 6f451ff | estherc | 29 October 2015, 05:40:49 UTC | Add paired set schema and test data | 29 October 2015, 05:40:49 UTC |
| 93262b4 | estherc | 29 October 2015, 05:39:36 UTC | Add analysis_file_set and series subtypes | 29 October 2015, 05:39:36 UTC |
| e1ee6da | estherc | 29 October 2015, 05:38:44 UTC | Move documents to mixins | 29 October 2015, 05:38:44 UTC |
| 0a2f12a | estherc | 29 October 2015, 03:11:44 UTC | Update schema_version and upgrade | 29 October 2015, 03:11:44 UTC |
| be718bc | estherc | 29 October 2015, 01:26:10 UTC | Update load order and test data | 29 October 2015, 01:26:10 UTC |
| e342105 | estherc | 29 October 2015, 01:25:50 UTC | Share related_files calculated properties | 29 October 2015, 01:25:50 UTC |
| cdc748d | estherc | 29 October 2015, 01:24:48 UTC | Add related_files from mixins | 29 October 2015, 01:24:48 UTC |
| 50b7f2a | estherc | 29 October 2015, 01:23:00 UTC | Remove related_files | 29 October 2015, 01:23:00 UTC |
| e95c288 | estherc | 29 October 2015, 01:22:43 UTC | Add related_files to mixins | 29 October 2015, 01:22:43 UTC |
| 1e6d575 | Forrest Tanaka | 28 October 2015, 04:09:21 UTC | Merge remote-tracking branch 'origin/master' into 2978-graph-filter-3074-branch | 28 October 2015, 04:09:21 UTC |
| 3de9707 | Forrest Tanaka | 28 October 2015, 01:19:47 UTC | Embed references Only embed in human and mouse donors — only they have references defined in their schemas | 28 October 2015, 01:19:47 UTC |
| 1880373 | Forrest Tanaka | 27 October 2015, 23:47:23 UTC | Merge remote-tracking branch 'origin/master' into 1415-references | 27 October 2015, 23:47:23 UTC |
| ea1c23e | estherc | 27 October 2015, 20:41:34 UTC | Merge in 3347-spike-ins branch | 27 October 2015, 20:41:34 UTC |
| 8425a09 | estherc | 27 October 2015, 20:00:48 UTC | Merge branch 'master' into 3345-new-dataset-schemas | 27 October 2015, 20:00:48 UTC |
| d677ded | estherc | 27 October 2015, 19:34:40 UTC | Remove project_type=training enum | 27 October 2015, 19:34:40 UTC |
| 2531a28 | estherc | 27 October 2015, 19:19:59 UTC | Add project test data | 27 October 2015, 19:19:59 UTC |
| 7a0d7d5 | estherc | 27 October 2015, 19:19:37 UTC | Add project dataset type | 27 October 2015, 19:19:37 UTC |
| ab6405b | Cricket Sloan | 27 October 2015, 17:41:18 UTC | Merge remote-tracking branch 'origin/3381-mirbase-enums' into 3326-donor-documents | 27 October 2015, 17:41:18 UTC |
| 8efd5ef | Cricket Sloan | 27 October 2015, 17:40:39 UTC | Merge remote-tracking branch 'origin/3376' into 3326-donor-documents | 27 October 2015, 17:40:39 UTC |
| 8a5825b | Cricket Sloan | 27 October 2015, 17:39:06 UTC | Merge remote-tracking branch 'origin/3373-targets-default' into 3326-donor-documents | 27 October 2015, 17:39:06 UTC |
| 47b90dd | Cricket Sloan | 27 October 2015, 17:38:50 UTC | Merge remote-tracking branch 'origin/3364-microRNA' into 3326-donor-documents | 27 October 2015, 17:38:50 UTC |
| 37489f0 | Cricket Sloan | 27 October 2015, 17:33:39 UTC | Merge remote-tracking branch 'origin/3362-read-depth-change' into 3326-donor-documents | 27 October 2015, 17:33:39 UTC |
| e49a288 | Cricket Sloan | 27 October 2015, 17:33:13 UTC | Merge remote-tracking branch 'origin/master' into 3326-donor-documents | 27 October 2015, 17:33:13 UTC |
| 36bcdb0 | Cricket Alicia Sloan | 27 October 2015, 16:53:23 UTC | Update file.json | 27 October 2015, 16:53:23 UTC |
| c3d33f8 | Laurence Rowe | 27 October 2015, 01:07:13 UTC | Merge pull request #991 from ENCODE-DCC/3284-dataset-audits 3284 Dataset audit and status display | 27 October 2015, 01:07:13 UTC |
| a8b541b | Laurence Rowe | 27 October 2015, 01:06:36 UTC | Merge pull request #990 from ENCODE-DCC/3307-ontology-page 3307 Add Ontologies menu | 27 October 2015, 01:06:36 UTC |
| 6c341e0 | Laurence Rowe | 27 October 2015, 01:05:41 UTC | Merge pull request #989 from ENCODE-DCC/3380-import-data-py3 3380 import data py3 | 27 October 2015, 01:05:41 UTC |
| 7f914a3 | Laurence Rowe | 27 October 2015, 00:23:20 UTC | Clean up trackhub parameter generating code to avoid mutating module globals. Fixes #3386. | 27 October 2015, 00:23:20 UTC |
| 9ce453e | Laurence Rowe | 27 October 2015, 00:20:35 UTC | Convert trackhub tests to python. Currently they share the indexing setup with features defined in features/conftest.py | 27 October 2015, 00:21:49 UTC |
| 6bdd5b3 | estherc | 26 October 2015, 23:07:39 UTC | Add more test data for different annotation_types | 26 October 2015, 23:07:39 UTC |
| 6d5bf4f | Forrest Tanaka | 26 October 2015, 17:40:54 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 1415-references | 26 October 2015, 17:40:54 UTC |
| 5a04895 | Laurence Rowe | 24 October 2015, 00:06:40 UTC | Skip missing Excel sheets. | 24 October 2015, 00:06:40 UTC |
| 862efb6 | Laurence Rowe | 24 October 2015, 00:00:50 UTC | Python 3 compatibility for import-data | 24 October 2015, 00:00:50 UTC |
| 310d27c | estherc | 23 October 2015, 21:24:32 UTC | Update file.py | 23 October 2015, 21:24:32 UTC |
| 863671a | estherc | 23 October 2015, 17:05:25 UTC | Adjust test data load order | 23 October 2015, 17:05:25 UTC |
| 5af6b52 | estherc | 23 October 2015, 16:37:16 UTC | Add organism to composite | 23 October 2015, 16:37:16 UTC |
| efec039 | Cricket Alicia Sloan | 23 October 2015, 00:47:01 UTC | Update target.json | 23 October 2015, 00:47:01 UTC |
| d30aeb7 | Cricket Alicia Sloan | 23 October 2015, 00:00:53 UTC | Update mouse_donor.json adding in test data | 23 October 2015, 00:00:53 UTC |
| f0d0d5a | Cricket Alicia Sloan | 22 October 2015, 23:59:21 UTC | Update donor.json adding into base donor | 22 October 2015, 23:59:21 UTC |
| 8c0e358 | Cricket Alicia Sloan | 22 October 2015, 23:42:41 UTC | Update pipeline.json add in test data | 22 October 2015, 23:42:41 UTC |
| 9d6673e | Cricket Alicia Sloan | 22 October 2015, 23:40:45 UTC | Update pipeline.json | 22 October 2015, 23:40:45 UTC |
| 1e163b8 | Cricket Alicia Sloan | 22 October 2015, 23:37:06 UTC | Update analysis_step.json | 22 October 2015, 23:37:06 UTC |
| 7e815a9 | estherc | 22 October 2015, 22:21:01 UTC | Removed default type for annotation | 22 October 2015, 22:21:01 UTC |
| b8e66f7 | estherc | 22 October 2015, 21:50:24 UTC | Add organism to annotation test data | 22 October 2015, 21:50:24 UTC |
